Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_H10
         (651 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P20227 Cluster: TATA-box-binding protein; n=7; Eukaryot...    36   1.1  
UniRef50_Q4N3Z0 Cluster: Cation-transporting ATPase; n=1; Theile...    34   3.4  
UniRef50_Q4UMX8 Cluster: Valyl-tRNA synthetase; n=1; Rickettsia ...    34   3.4  
UniRef50_Q92GR9 Cluster: Valyl-tRNA synthetase; n=18; Rickettsia...    33   7.8  

>UniRef50_P20227 Cluster: TATA-box-binding protein; n=7;
           Eukaryota|Rep: TATA-box-binding protein - Drosophila
           melanogaster (Fruit fly)
          Length = 353

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +1

Query: 262 MDHMLPSPYNIPGIGTPLHQPEED 333
           MD ML   ++IP IGTPLHQ E D
Sbjct: 1   MDQMLSPNFSIPSIGTPLHQMEAD 24


>UniRef50_Q4N3Z0 Cluster: Cation-transporting ATPase; n=1; Theileria
            parva|Rep: Cation-transporting ATPase - Theileria parva
          Length = 2664

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
 Frame = -1

Query: 336  LVFFRLMQWCTYSRYVIRT--WQHMIHFSFFTFFIWKLRVSVLVSVDLTVYLLID 178
            LV F ++Q  + +R+++R+  W H + F  FTF I  LR+  ++SV L +  LI+
Sbjct: 1560 LVTFMIVQHVS-NRFLLRSISWLHTVLFPIFTFVI--LRIPFIISVGLNLIFLIN 1611


>UniRef50_Q4UMX8 Cluster: Valyl-tRNA synthetase; n=1; Rickettsia
           felis|Rep: Valyl-tRNA synthetase - Rickettsia felis
           (Rickettsia azadi)
          Length = 859

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 362 SNSFNSNSPRHNRHLPLWVRRQL*DLAQSWGLHRGLCTHMHQ 487
           S+ F  N  RH++  P+ +R Q  ++ ++W  +  L  H+HQ
Sbjct: 521 SDDFTVNKERHDKLFPMELRPQAHEIIRTWAFYTILKAHLHQ 562


>UniRef50_Q92GR9 Cluster: Valyl-tRNA synthetase; n=18;
           Rickettsiales|Rep: Valyl-tRNA synthetase - Rickettsia
           conorii
          Length = 812

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 362 SNSFNSNSPRHNRHLPLWVRRQL*DLAQSWGLHRGLCTHMHQ 487
           S+ F  N  RH++  P+ +R Q  ++ ++W  +  L  H+HQ
Sbjct: 474 SDDFAVNKDRHDKLFPMDLRPQAHEIIRTWAFYTILKAHLHQ 515


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 534,694,713
Number of Sequences: 1657284
Number of extensions: 9317015
Number of successful extensions: 27564
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27525
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)