Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_H10
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46399| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_647| Best HMM Match : Fork_head (HMM E-Value=3.5e-21)               29   3.3  
SB_10966| Best HMM Match : Peptidase_C48 (HMM E-Value=1.6)             29   3.3  
SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  

>SB_46399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 556 IAAGNLSSQQMLXQASPAPMTPLTP 630
           +  GN SS +    A  +PMTPLTP
Sbjct: 308 VTNGNASSNETTSSAPASPMTPLTP 332


>SB_647| Best HMM Match : Fork_head (HMM E-Value=3.5e-21)
          Length = 491

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 217 NTHPKFPYKESKERKMDHML-PSPYNIPGIGTPLHQP 324
           N HP  P  E K++K +H L P P + P   TP+H+P
Sbjct: 316 NIHPLEP--EQKKKKGEHFLFPKP-SFPKKSTPVHRP 349


>SB_10966| Best HMM Match : Peptidase_C48 (HMM E-Value=1.6)
          Length = 495

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 348 RQDLLVFFRLMQWCTYSRYVIRTWQ 274
           RQD L FFR++ W   SR++ R +Q
Sbjct: 45  RQDQLAFFRIIAWKRGSRWIRRGYQ 69


>SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 407 PLWVRRQL*DLAQSWGLHR 463
           PLWV  +  DLA+ WGL R
Sbjct: 689 PLWVNERNVDLAEDWGLGR 707


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,818,645
Number of Sequences: 59808
Number of extensions: 306183
Number of successful extensions: 1020
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)