Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_H10
         (651 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U35147-1|AAA79092.1|  354|Drosophila melanogaster TATA-box bindi...    36   0.063
U11718-1|AAA68629.1|  353|Drosophila melanogaster TATA-box bindi...    36   0.063
M38388-1|AAA28926.1|  353|Drosophila melanogaster TATA-consensus...    36   0.063
M38082-1|AAA28931.1|  353|Drosophila melanogaster TATA-box bindi...    36   0.063
AY069663-1|AAL39808.1|  353|Drosophila melanogaster LD44083p pro...    36   0.063
AE013599-3256|AAF46754.1|  353|Drosophila melanogaster CG9874-PA...    36   0.063
AE014298-2649|AAN09453.1|  357|Drosophila melanogaster CG32494-P...    29   7.2  

>U35147-1|AAA79092.1|  354|Drosophila melanogaster TATA-box binding
           protein protein.
          Length = 354

 Score = 35.5 bits (78), Expect = 0.063
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +1

Query: 262 MDHMLPSPYNIPGIGTPLHQPEED 333
           MD ML   ++IP IGTPLHQ E D
Sbjct: 1   MDQMLSPNFSIPSIGTPLHQMEAD 24



 Score = 28.3 bits (60), Expect = 9.6
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +1

Query: 562 AGNLSSQQMLXQASPAPMTPLTPLSADPG 648
           AG+  S          PMTP TP SADPG
Sbjct: 147 AGDALSNIHQTMGPSTPMTPATPGSADPG 175


>U11718-1|AAA68629.1|  353|Drosophila melanogaster TATA-box binding
           protein protein.
          Length = 353

 Score = 35.5 bits (78), Expect = 0.063
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +1

Query: 262 MDHMLPSPYNIPGIGTPLHQPEED 333
           MD ML   ++IP IGTPLHQ E D
Sbjct: 1   MDQMLSPNFSIPSIGTPLHQMEAD 24


>M38388-1|AAA28926.1|  353|Drosophila melanogaster
           TATA-consensus-binding transcriptionfactor TFII protein.
          Length = 353

 Score = 35.5 bits (78), Expect = 0.063
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +1

Query: 262 MDHMLPSPYNIPGIGTPLHQPEED 333
           MD ML   ++IP IGTPLHQ E D
Sbjct: 1   MDQMLSPNFSIPSIGTPLHQMEAD 24


>M38082-1|AAA28931.1|  353|Drosophila melanogaster TATA-box binding
           protein protein.
          Length = 353

 Score = 35.5 bits (78), Expect = 0.063
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +1

Query: 262 MDHMLPSPYNIPGIGTPLHQPEED 333
           MD ML   ++IP IGTPLHQ E D
Sbjct: 1   MDQMLSPNFSIPSIGTPLHQMEAD 24


>AY069663-1|AAL39808.1|  353|Drosophila melanogaster LD44083p
           protein.
          Length = 353

 Score = 35.5 bits (78), Expect = 0.063
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +1

Query: 262 MDHMLPSPYNIPGIGTPLHQPEED 333
           MD ML   ++IP IGTPLHQ E D
Sbjct: 1   MDQMLSPNFSIPSIGTPLHQMEAD 24


>AE013599-3256|AAF46754.1|  353|Drosophila melanogaster CG9874-PA
           protein.
          Length = 353

 Score = 35.5 bits (78), Expect = 0.063
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +1

Query: 262 MDHMLPSPYNIPGIGTPLHQPEED 333
           MD ML   ++IP IGTPLHQ E D
Sbjct: 1   MDQMLSPNFSIPSIGTPLHQMEAD 24


>AE014298-2649|AAN09453.1|  357|Drosophila melanogaster CG32494-PA
           protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +2

Query: 317 INLKKTSKSCLMQCNSNS-FNSNSPRHNRHLPLWVRRQL*DLAQSWGLHRGLCTHMHQQP 493
           I L K S S     N+N+  N+N+ RH RH     RRQ   L Q   L   L  H  QQ 
Sbjct: 189 IQLPKGSSSSSSSSNNNTCHNANNQRHWRHTRQQSRRQQQQLRQLLLLSFEL-QHQQQQQ 247

Query: 494 AMQ 502
             Q
Sbjct: 248 QQQ 250


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,292,461
Number of Sequences: 53049
Number of extensions: 445144
Number of successful extensions: 1553
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1553
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)