Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_H03
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 195 4e-51
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 191 9e-50
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 30 0.33
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 28 1.0
SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi... 27 1.8
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc... 27 3.1
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 27 3.1
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 26 4.1
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 4.1
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ... 26 4.1
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 25 7.2
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 7.2
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.2
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 25 9.5
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce... 25 9.5
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 195 bits (476), Expect = 4e-51
Identities = 96/184 (52%), Positives = 129/184 (70%)
Frame = +1
Query: 94 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 273
+ I ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGS 61
Query: 274 KKELAAVRTVCSHVXNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 453
+K A +RT S + NMI GVT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+
Sbjct: 62 RKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121
Query: 454 TRVKMAPXVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVXNNDIXKFLDGLYVSE 633
+K P VTV S KDE+IIEGNSLE+VS SAA I+Q V N DI KFLDG+YVSE
Sbjct: 122 RVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSE 181
Query: 634 KTTV 645
+ +
Sbjct: 182 RGNI 185
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 191 bits (465), Expect = 9e-50
Identities = 94/184 (51%), Positives = 127/184 (69%)
Frame = +1
Query: 94 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 273
+ I ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGS 61
Query: 274 KKELAAVRTVCSHVXNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 453
+K A +R+V S + NMI GVT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+
Sbjct: 62 RKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121
Query: 454 TRVKMAPXVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVXNNDIXKFLDGLYVSE 633
+K P VTV S KDE+I+EGNSLE+VS SAA I+Q V N DI KFLDG+YVSE
Sbjct: 122 RVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSE 181
Query: 634 KTTV 645
+ +
Sbjct: 182 RGNI 185
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 29.9 bits (64), Expect = 0.33
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +1
Query: 121 KIPDGLTVHVKSRLVTV---KGP-RGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 288
K+PDG+ + SRL K P L F H +VD+ + L + E WF
Sbjct: 1564 KVPDGIFLKT-SRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSL 1622
Query: 289 AVRTVCSHVXNMIKGVT 339
+ T+CS + N++ VT
Sbjct: 1623 VLATICSCLGNLLNLVT 1639
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 490 NSPKQKDELIIEGNSLEDVSSSAALIQQSTTVXNNDIXKFLDGL-YVSEK 636
+SPK+K +L ++G L+ + + +LI+QS N + G+ Y+++K
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQSLINTKNVLGNKKTGVSYLAKK 298
>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
27a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 156 RFHMDRKPVWDFDFLICYNLLHVWALFDNKSREK 55
RFH+ + P+W NL +W L N++REK
Sbjct: 60 RFHLMKNPLWR----PTVNLDRLWTLVPNETREK 89
>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 148
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 156 RFHMDRKPVWDFDFLICYNLLHVWALFDNKSREK 55
RFH+ + P+W NL +W L N++R+K
Sbjct: 60 RFHLMKNPLWR----PTVNLDRLWTLLPNEARDK 89
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 60 PGSCCQTKPKHEANCSKSESQNPRRAY 140
P + Q KPKHE N + S RR +
Sbjct: 178 PSNSVQVKPKHEHNVDYNSSMYRRRTF 204
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 147 MDRKPVWDFDFLICYNLLHVWALFDNKSREKDRL 46
M+R P+ FDF+ N +H LF + +L
Sbjct: 294 MERLPIPPFDFITSLNSIHEGLLFIGSKNSESKL 327
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = -3
Query: 303 DCPHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGPFNCHQT 157
D P+G GS F+ V+H+N N+ ++ +N N H +
Sbjct: 386 DFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHS 434
>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +1
Query: 535 LEDVSSSAALIQQSTTVXNNDIXKFLDGLYVSEKTT 642
+ D+S+SA + T + N ++ K +GL+++ +T+
Sbjct: 78 MSDISNSACRASKITALNNRELYKDDNGLFITVQTS 113
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 514 LIIEGNSLEDVSSSAALIQQSTTVXNNDIXKFLDGLYVSEKTTVV 648
+++ G ++V SS ++ ++T NDI L G S KTT++
Sbjct: 48 IVLRGKP-QNVESSGVRVKGNSTSGGNDIKVLLLGAGDSGKTTIM 91
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 297 PHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGP 175
PH GK S +N E+R A+V+S + PF GP
Sbjct: 127 PHAGKAA-QSAHVMNSTESRPSSAHVSSSYTQKPFAFPLGP 166
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 287 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 177
A SFL+P STF R F+ +S C + LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 469 APXVTVVNSPKQKDELIIEGNSLEDVSSS 555
AP V N +Q + +IEGN+ +SSS
Sbjct: 40 APFKAVDNINQQDEPTLIEGNNESSISSS 68
>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 24 QVAIFSCLNDLFPGS--CCQTKPKHEANCSKSESQNPRRA 137
++ + L+++ P + CC++ +EA C E Q P A
Sbjct: 270 EIELIQELHEMEPENRWCCESLVNYEALCKTLEKQKPTEA 309
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,859
Number of Sequences: 5004
Number of extensions: 55320
Number of successful extensions: 152
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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