Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_H03
(650 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 166 1e-41
SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 5e-07
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075) 31 0.81
SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82) 28 5.7
SB_44616| Best HMM Match : rve (HMM E-Value=0.012) 28 5.7
SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07) 28 5.7
SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7) 28 5.7
SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86) 28 7.6
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_20278| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30) 28 7.6
SB_28995| Best HMM Match : LicD (HMM E-Value=0.018) 28 7.6
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 166 bits (404), Expect = 1e-41
Identities = 73/128 (57%), Positives = 98/128 (76%)
Frame = +1
Query: 91 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 270
MK I+A++ V IPD + V VKSR+VTV GPRG LKRNF+HL +++ V ++V+ WF
Sbjct: 557 MKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFA 616
Query: 271 SKKELAAVRTVCSHVXNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKY 450
S+KELA V+T+ +H+ NMIKGV G++YKMRAVYAHFPIN E +++E+RNFLGEKY
Sbjct: 617 SRKELACVKTIITHIENMIKGVIYGYRYKMRAVYAHFPINIAIQENGTLVEVRNFLGEKY 676
Query: 451 ITRVKMAP 474
+ RV+M P
Sbjct: 677 VRRVRMRP 684
>SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 51.6 bits (118), Expect = 5e-07
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = +1
Query: 559 ALIQQSTTVXNNDIXKFLDGLYVSEKTTVV 648
ALIQQST V N DI KFLDG+YVSEKTT+V
Sbjct: 2 ALIQQSTKVKNKDIRKFLDGVYVSEKTTIV 31
>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
Length = 762
Score = 31.1 bits (67), Expect = 0.81
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +1
Query: 406 GNSIIEIRNFLGEKYITRVKMAPXVTVVNSPKQ--KDELIIEGNSLEDVSSSAALIQQST 579
G ++ +++ LG++ + T + K+EL +SLE+VS A +Q S
Sbjct: 196 GREVVRLKDELGKQASNELSFIAKTTELEDQLVLLKEELNSRVSSLENVSKQLAELQSSA 255
Query: 580 TVXNNDIXKFLDGLYVSEK 636
+ +I L V+EK
Sbjct: 256 LTKDEEISSLTKRLQVTEK 274
>SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 674
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 611 KNFXISLXLTVVDCWMRAAELETSSKELPSMISSSFCFGELTTV 480
K+F + +VDCW+ + E S+ LPS S F +TTV
Sbjct: 298 KDFIGRIVPLLVDCWIESNPAEMST-SLPSSSISPVAFSTMTTV 340
>SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -1
Query: 560 AAELETSSKELPSMISSSFCFGELTTVTXGAIFTLVMYFSPKKLRISIIEL 408
AAE++TS L + S S C VT IFT MY P+++ ++ L
Sbjct: 234 AAEVKTSRIFLLVINSFSICLAPFMIVTFIEIFTGTMYTVPRQVYLATTNL 284
>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 252 LQETRVYHANVNSQVFEVPFENSAGPFNCHQ 160
L TR+ + V+S EV E S P++CHQ
Sbjct: 160 LYNTRIPNVTVSSDGGEVELEISDDPYDCHQ 190
>SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 305 QTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVT 162
QT++T A F D RRR F+ +S C + L R+P P++ T
Sbjct: 85 QTMITTA--FPDTRKSPLTRRRNFSDGVSDLSCTENLARSPCAPVSPT 130
>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
Length = 883
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 73 VKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRG 186
++ + +K++ + K K DG+ VH K+ TV+ PRG
Sbjct: 98 LQNAKRIKKLEEDLKKKTCDGVLVHRKAVAATVEEPRG 135
>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
Length = 1189
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +1
Query: 121 KIPDGLTVHVKSRLVTVKGPRG---VLKRNFKHL-AVDIRMVNPRLLKV 255
K+ DGL VH+ ++ V K P+ + KR + L A+ I + +P + KV
Sbjct: 4 KLDDGLRVHIVTQYVLFKNPKKLEIIAKRQKETLEALQINLDHPHVAKV 52
>SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)
Length = 309
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 530 LPSMISSSFCFGELTTVTXGAIFTLVMYFSPKKLRISIIE 411
+P I S G+L +T G I T PKKL +IE
Sbjct: 218 IPIAIGSKVNLGQLNILTAGPIITANTSGDPKKLANQVIE 257
>SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)
Length = 197
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Frame = -3
Query: 243 TRVYHANVNSQVFEVP-------FENSAGPFNCHQTRFHMDRKP 133
TR YH NV VF V F S G N HQ + DR+P
Sbjct: 57 TRSYHENVVRPVFGVSDYWYRYEFAKSRGQINRHQLSWREDRQP 100
>SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)
Length = 769
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +1
Query: 337 TKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYITRVKMAPXVTVVNSPKQ 504
T+G MR + P + VTTE ++++ +GE+ + P T++ +P Q
Sbjct: 384 TRGDHVTMRGEHPTTPASSVTTEDKDLLQML-AVGEQGLANKGTVPQSTLITTPIQ 438
>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1427
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 105 SKSESQNPRRAYGPCEIASGDS*RAPRS--SQKELQTL 212
S+ ++ R Y PC I SG++ APR +KE++ L
Sbjct: 1363 SEDDTTTGARRYRPCPIESGNTYEAPRQVVMEKEVEEL 1400
>SB_20278| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 544 VSSSAALIQQSTTVXNNDIXKFLDGLYVSEKTTV 645
V +++ ++ TTV +ND+ K L GL S+ T +
Sbjct: 99 VKGASSQFRKFTTVSDNDVLKLLSGLSKSKATGI 132
>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
Length = 1152
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 148 VKSRLVTVKGPRGVLKRNFKHL 213
V++R TV PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090
>SB_28995| Best HMM Match : LicD (HMM E-Value=0.018)
Length = 1164
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 117 FLICYNLLHVWALFDNKSREKDRLDTKRLPLATCRNT 7
+ IC N L + F +SR++DR TK+ L CR T
Sbjct: 855 YKICKNGLWAYEGFGKRSRDRDRSGTKK-HLTGCRAT 890
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,545,761
Number of Sequences: 59808
Number of extensions: 426841
Number of successful extensions: 1095
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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