Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_H03
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   229   1e-60
U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical pr...    31   0.71 
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    30   1.2  
AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical ...    29   2.2  
Z81132-2|CAB03431.1|  125|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  229 bits (560), Expect = 1e-60
 Identities = 105/186 (56%), Positives = 137/186 (73%)
 Frame = +1

Query: 91  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 270
           MK I +N  V  P+G+T  VK+R+V V GPRG ++++F+HL +++  +    L+V KWFG
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60

Query: 271 SKKELAAVRTVCSHVXNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKY 450
            +KELAA+RTVCSH+ NMIKGVT GF+YKMR+VYAHFPIN    +GN  +EIRNFLGEK 
Sbjct: 61  VRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKI 120

Query: 451 ITRVKMAPXVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVXNNDIXKFLDGLYVS 630
           + RV +   V    S  QKDE+++EGN ++ VS +AA IQQST V   DI KFLDG+YVS
Sbjct: 121 VRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYVS 180

Query: 631 EKTTVV 648
           EKTT+V
Sbjct: 181 EKTTIV 186


>U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical
           protein T20B12.3 protein.
          Length = 504

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 341 LVTPLIMFXTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 204
           L  P +++ + ++++LT   SFL   H  T+    F  R+S  +CL
Sbjct: 275 LTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
 Frame = +1

Query: 208 HLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVXNM---IKGVT--KGFQYKMRAVY 372
           H+  D++++  +   ++ WF   ++L ++RT C  + ++   I  +T  KGF + M+A +
Sbjct: 361 HVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKAEF 420

Query: 373 AHF 381
            +F
Sbjct: 421 LNF 423


>AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical
           protein F35B3.3 protein.
          Length = 113

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -3

Query: 648 HNSCFLRYIKTIQELXDIVIXDCSRLLDESSRARDIFQR 532
           +N+C LR IK +  L  ++  + SRL +  SR RD+F++
Sbjct: 25  NNNCKLRQIKPVPNLTRLL--EESRLTNSLSRLRDVFKK 61


>Z81132-2|CAB03431.1|  125|Caenorhabditis elegans Hypothetical
           protein T26E4.2 protein.
          Length = 125

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/71 (29%), Positives = 30/71 (42%)
 Frame = +3

Query: 36  FSCLNDLFPGSCCQTKPKHEANCSKSESQNPRRAYGPCEIASGDS*RAPRSSQKELQTLG 215
           FSC    F GS      +   NC+ S S    +   P   A   S + P++     + LG
Sbjct: 23  FSCTIPAFNGSVYS---QTAVNCNNSYSDIACQQLYPPAYAYSISSKYPKAGGTGGRPLG 79

Query: 216 C*HSHGKPSSP 248
           C  S G+P+ P
Sbjct: 80  CYSSSGRPTGP 90


>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
           protein M110.4b protein.
          Length = 1155

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 219 NSQVFEVPFENSAGPFNCHQTRFHMDR 139
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
           protein M110.4a protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 219 NSQVFEVPFENSAGPFNCHQTRFHMDR 139
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,073,414
Number of Sequences: 27780
Number of extensions: 320267
Number of successful extensions: 817
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)