Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_H03
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos...   201   3e-52
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim...   201   3e-52
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil...   201   3e-52
At1g05190.1 68414.m00523 ribosomal protein L6 family protein Sim...    38   0.004
At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger) fa...    31   0.88 
At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6)...    28   4.7  

>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
           ribosomal protein L9, cytosolic - garden pea,
           PIR2:S19978
          Length = 194

 Score =  201 bits (491), Expect = 3e-52
 Identities = 97/187 (51%), Positives = 130/187 (69%), Gaps = 5/187 (2%)
 Frame = +1

Query: 91  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKV 255
           MK I++++ + IPDG+ + V ++++ V+GPRG L R+FKHL +D +++       R LK+
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 256 EKWFGSKKELAAVRTVCSHVXNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNF 435
           + WFGS+K  A++RT  SHV N+I GVT+GF Y+MR VYAHFPIN      N  IEIRNF
Sbjct: 61  DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120

Query: 436 LGEKYITRVKMAPXVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVXNNDIXKFLD 615
           LGEK + +V+M   V +V S K KDE+I+EGN +E VS S ALI Q   V   DI KFLD
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 616 GLYVSEK 636
           G+YVSEK
Sbjct: 181 GIYVSEK 187


>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
           similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
           [Arabidopsis thaliana]
          Length = 194

 Score =  201 bits (491), Expect = 3e-52
 Identities = 95/191 (49%), Positives = 134/191 (70%), Gaps = 5/191 (2%)
 Frame = +1

Query: 91  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKV 255
           MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK+
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 256 EKWFGSKKELAAVRTVCSHVXNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNF 435
           + WFG++K  A++RT  SHV N+I GVT+GF+YKMR VYAHFPIN         IEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 436 LGEKYITRVKMAPXVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVXNNDIXKFLD 615
           LGEK + +V+M   VT+V S K KDE++++GN +E VS S ALI Q   V   DI KFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 616 GLYVSEKTTVV 648
           G+YVSEK+ +V
Sbjct: 181 GIYVSEKSKIV 191


>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
           to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
           thaliana]
          Length = 194

 Score =  201 bits (491), Expect = 3e-52
 Identities = 95/191 (49%), Positives = 134/191 (70%), Gaps = 5/191 (2%)
 Frame = +1

Query: 91  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKV 255
           MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK+
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 256 EKWFGSKKELAAVRTVCSHVXNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNF 435
           + WFG++K  A++RT  SHV N+I GVT+GF+YKMR VYAHFPIN         IEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 436 LGEKYITRVKMAPXVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVXNNDIXKFLD 615
           LGEK + +V+M   VT+V S K KDE++++GN +E VS S ALI Q   V   DI KFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 616 GLYVSEKTTVV 648
           G+YVSEK+ +V
Sbjct: 181 GIYVSEKSKIV 191


>At1g05190.1 68414.m00523 ribosomal protein L6 family protein
           Similar to Mycobacterium RlpF (gb|Z84395). ESTs
           gb|T75785,gb|R30580,gb|T04698 come from this gene
          Length = 223

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 21/86 (24%), Positives = 43/86 (50%)
 Frame = +1

Query: 103 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 282
           +  Q + +P  +T+ ++ + + VKGP G L   +    V++       L+V+K   +++ 
Sbjct: 46  IGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPR-EVELTKEESGFLRVKKTVETRRA 104

Query: 283 LAAVRTVCSHVXNMIKGVTKGFQYKM 360
                   +   NM+ GV+KGF+ K+
Sbjct: 105 NQMHGLFRTLTDNMVVGVSKGFEKKL 130


>At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 193

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -3

Query: 189 NSAGPFNCHQTRFHMDRKPVWDFDFLICYNLLHVWALFDNKSREK-DRLDTKRLP 28
           +S G F+C+     +    V     L C+  +H W    N SR++ D+ D KR P
Sbjct: 14  DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREP 68


>At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6) /
           caspase family protein similar to latex-abundant protein
           [Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
           PF00656: ICE-like protease (caspase) p20 domain
          Length = 410

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = +1

Query: 112 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKV 255
           +++K+ DG  VHV ++ + ++    +LK+N  +  +++  + P L  V
Sbjct: 204 KELKLEDGAKVHVVNKSLPLQTLIDILKQNTGNNDIEVGKIRPTLFNV 251


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,233,025
Number of Sequences: 28952
Number of extensions: 292800
Number of successful extensions: 694
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)