Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_H02
(572 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 165 4e-42
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 55 6e-09
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 54 1e-08
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 52 5e-08
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 51 1e-07
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 42 5e-05
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 39 5e-04
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 39 6e-04
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 2.6
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po... 26 4.5
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 7.9
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 165 bits (401), Expect = 4e-42
Identities = 78/125 (62%), Positives = 97/125 (77%)
Frame = +3
Query: 198 RFYAKDVRFGADVRALMLQGVDILADAVAVTMGPKGXNVILEQSWGSPKITKDGVTVAKG 377
R YAKD++FG D RA +L GVD LA AV+VT+GPKG NV+++Q +GSPKITKDGVTVA+
Sbjct: 31 RTYAKDLKFGVDARASLLTGVDTLARAVSVTLGPKGRNVLIDQPFGSPKITKDGVTVARS 90
Query: 378 VELKDKFQNIGAXLVQNVXNNTNXEAGDGTTTATVLARAIAXEGFEKISKGANPIDITXG 557
V LKDKF+N+GA LVQ+V + TN AGDGTTTATVL RAI E ++ G NP+D+ G
Sbjct: 91 VSLKDKFENLGARLVQDVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRG 150
Query: 558 VMLAV 572
+ LAV
Sbjct: 151 IQLAV 155
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 55.2 bits (127), Expect = 6e-09
Identities = 34/111 (30%), Positives = 54/111 (48%)
Frame = +3
Query: 225 GADVRALMLQGVDILADAVAVTMGPKGXNVILEQSWGSPKITKDGVTVAKGVELKDKFQN 404
G D + +A+ V ++GP+G + IL G +T DG T+ +E++ +
Sbjct: 32 GIDAVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQI-- 89
Query: 405 IGAXLVQNVXNNTNXEAGDGTTTATVLARAIAXEGFEKISKGANPIDITXG 557
A L+ + + + E GDGTT VLA A+ + I KG +PI I G
Sbjct: 90 --AKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADG 138
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 54.4 bits (125), Expect = 1e-08
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Frame = +3
Query: 225 GADVRALMLQGVDILADAVAVTMGPKGXNVILEQ-SWGSPKITKDGVTVAKGVELKDKFQ 401
G + R G + D V T+GPKG + IL+ S G +T DG T+ K + L
Sbjct: 18 GENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIAL----D 73
Query: 402 NIGAXLVQNVXNNTNXEAGDGTTTATVLARAIAXEGFEKISKGANPIDITXGVMLA 569
N A ++ N+ + E GDGTT+ V A + + ++ +P I G +A
Sbjct: 74 NAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIA 129
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 52.4 bits (120), Expect = 5e-08
Identities = 33/116 (28%), Positives = 53/116 (45%)
Frame = +3
Query: 225 GADVRALMLQGVDILADAVAVTMGPKGXNVILEQSWGSPKITKDGVTVAKGVELKDKFQN 404
G DVR + +A+ V ++GP G + +L G +T DG T+ + L D
Sbjct: 19 GEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATI---LSLLDVEHP 75
Query: 405 IGAXLVQNVXNNTNXEAGDGTTTATVLARAIAXEGFEKISKGANPIDITXGVMLAV 572
G LV+ + + E GDGTT+ ++A + E + +P I G LA+
Sbjct: 76 AGKVLVE-LAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAI 130
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 51.2 bits (117), Expect = 1e-07
Identities = 28/103 (27%), Positives = 55/103 (53%)
Frame = +3
Query: 231 DVRALMLQGVDILADAVAVTMGPKGXNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIG 410
+VR + +ADA+ ++GPKG + +++ G +T DG T+ K + + +
Sbjct: 19 EVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSV----LHPA 74
Query: 411 AXLVQNVXNNTNXEAGDGTTTATVLARAIAXEGFEKISKGANP 539
A ++ ++ + EAGDGTT+ +LA ++ + + KG +P
Sbjct: 75 AKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHP 117
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 42.3 bits (95), Expect = 5e-05
Identities = 28/101 (27%), Positives = 46/101 (45%)
Frame = +3
Query: 267 LADAVAVTMGPKGXNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAXLVQNVXNNTN 446
L D + +GP G +L G+ K+TKDG + +++ QN A + +
Sbjct: 28 LQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQI----QNPTASCIAKAATAQD 83
Query: 447 XEAGDGTTTATVLARAIAXEGFEKISKGANPIDITXGVMLA 569
GDGTT+ +L + + I +G +P I+ G LA
Sbjct: 84 DATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLA 124
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 39.1 bits (87), Expect = 5e-04
Identities = 22/88 (25%), Positives = 41/88 (46%)
Frame = +3
Query: 273 DAVAVTMGPKGXNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAXLVQNVXNNTNXE 452
D + T+GP G + ++ G I+ DG T+ K +++ + A + ++ + E
Sbjct: 38 DTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDI----VHPAAKTLVDIARAQDAE 93
Query: 453 AGDGTTTATVLARAIAXEGFEKISKGAN 536
GDGTT+ V A + E + G +
Sbjct: 94 VGDGTTSVVVFAGELLREARTFVEDGVS 121
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 38.7 bits (86), Expect = 6e-04
Identities = 23/98 (23%), Positives = 44/98 (44%)
Frame = +3
Query: 249 LQGVDILADAVAVTMGPKGXNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAXLVQN 428
+Q +AD + +GP+ +L GS +T DG + + +E+ + A +
Sbjct: 25 IQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEV----AHPAAKSMIE 80
Query: 429 VXNNTNXEAGDGTTTATVLARAIAXEGFEKISKGANPI 542
+ + E GDGTT+ +LA I + + +P+
Sbjct: 81 LARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPV 118
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 26.6 bits (56), Expect = 2.6
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Frame = -2
Query: 421 TXLAPMFWNLSLSSTPLATVTPSFVIFGD--PQDCSR-----ITFXPFGPIVTATASARM 263
T L P F NL SS+ T F+ D ++ SR I F V +
Sbjct: 129 TLLPPTFHNLIPSSSSYETAVAEFLHMEDLLQENVSRELECQICFGMLYDPVVSPCGHTF 188
Query: 262 STPCSMRALTSAP 224
PC M+ALT +P
Sbjct: 189 CGPCLMQALTQSP 201
>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 186 YQLSRFYAKDVRFGADVRALMLQGVDILADAV 281
Y+L+ F+ R+ V LQGV + AD V
Sbjct: 152 YRLTNFFQNHRRYAKSVDEKQLQGVALTADEV 183
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 25.0 bits (52), Expect = 7.9
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +3
Query: 312 VILEQSWGSPKITKDGVTVAK-GVELKDKFQNIGAXLVQNVXNNTNXEAGDGTTTATVLA 488
VI ++ S +T G T G+ELKD+F+ +G ++ T + T + A
Sbjct: 544 VIKQERPDSIYVTFGGQTALNVGIELKDEFEQLGVKVL-----GTPIDTIITTEDRELFA 598
Query: 489 RAIAXEGFEKISKGANPIDITXGVMLA 569
RA+ E EK +K A+ I + ++
Sbjct: 599 RAM-DEINEKCAKSASASSIEEAIKVS 624
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,021,486
Number of Sequences: 5004
Number of extensions: 35883
Number of successful extensions: 95
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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