Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_H02
         (572 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)               186   9e-48
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   52   3e-07
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  50   1e-06
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              37   0.013
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              34   0.095
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      30   1.2  
SB_38000| Best HMM Match : fn3 (HMM E-Value=0.0095)                    29   3.6  
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.7  
SB_54944| Best HMM Match : Gal_Lectin (HMM E-Value=9.5e-05)            27   8.2  
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
          Length = 278

 Score =  186 bits (454), Expect = 9e-48
 Identities = 91/129 (70%), Positives = 108/129 (83%), Gaps = 2/129 (1%)
 Frame = +3

Query: 171 SLHKSYQLSRFY--AKDVRFGADVRALMLQGVDILADAVAVTMGPKGXNVILEQSWGSPK 344
           SL + +  SRF    K+++FGA+ RA MLQGVD LADAVAVT+GPKG NVI+EQS+G PK
Sbjct: 45  SLGEGFSTSRFQNSPKELKFGAEARAAMLQGVDTLADAVAVTLGPKGKNVIIEQSFGGPK 104

Query: 345 ITKDGVTVAKGVELKDKFQNIGAXLVQNVXNNTNXEAGDGTTTATVLARAIAXEGFEKIS 524
           ITKDGVTVAK +ELKDK+QNIGA LVQ+V NNTN EAGDGTTTATVLAR+IA EGF  +S
Sbjct: 105 ITKDGVTVAKAIELKDKYQNIGARLVQDVANNTNEEAGDGTTTATVLARSIATEGFLHVS 164

Query: 525 KGANPIDIT 551
           KGANP +++
Sbjct: 165 KGANPQEVS 173


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
 Frame = +3

Query: 255 GVDILADAVAVTMGPKGXNVILEQSW--GSPKITKDGVTVAKGVELKDKFQNIGAXLVQN 428
           G   + D V  T+GPKG + IL+     G+ ++T DG T+ K + +     N  A ++  
Sbjct: 28  GAIAIGDLVKSTLGPKGMDKILQSFGQNGNIQVTNDGATILKSIGI----DNPAAKILVE 83

Query: 429 VXNNTNXEAGDGTTTATVLARAIAXEGFEKISKGANPIDITXG 557
           +    + E GDGTT+ TVL   +  E  + +S   +P  I  G
Sbjct: 84  LSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAG 126


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 30/101 (29%), Positives = 50/101 (49%)
 Frame = +3

Query: 267 LADAVAVTMGPKGXNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAXLVQNVXNNTN 446
           +A  +  ++GPKG + ++    G   +T DG T+   +E+  +     A L+  +  + +
Sbjct: 42  VASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMMEVDHQI----AKLMVELSKSQD 97

Query: 447 XEAGDGTTTATVLARAIAXEGFEKISKGANPIDITXGVMLA 569
            E GDGTT   VLA A+     + +  G +PI I  G  LA
Sbjct: 98  NEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELA 138


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 210 KDVRFGADVRALMLQGVDILADAVAVTMGPKGXNVILEQSWGSPKITKDGVTV 368
           KD     ++R   +     +ADA+  ++GPKG + +++   G   IT DG T+
Sbjct: 17  KDKEKPQEIRMTNITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDGATI 69


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 33.9 bits (74), Expect = 0.095
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 249 LQGVDILADAVAVTMGPKGXNVILEQSWGSPKITKDGVTV 368
           +     +ADAV  T+GP+G + ++    G   I+ DG T+
Sbjct: 661 IDACQFIADAVRTTLGPRGMDKLIVDGRGKATISNDGATI 700


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 450 EAGDGTTTATVLARAIAXEGFEKISKGANPIDITXG 557
           E GDGTT+ TVLA  +  E  + +S   +P  I  G
Sbjct: 9   EVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAG 44


>SB_38000| Best HMM Match : fn3 (HMM E-Value=0.0095)
          Length = 433

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +1

Query: 286 LQWVQKVXTLFWNNLGGP---RRSQKTA*QSPKVLNSRISSRTSVLX*YKTXL 435
           L WV +  ++F+NN GG     RS+      P+ L+ ++S  +S+   +K  L
Sbjct: 289 LSWVNQSFSVFYNNTGGSDTIPRSRADGWYVPRRLSKKLSYLSSIFLKHKVFL 341


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = +3

Query: 375 GVELKDKFQNIGAXLVQNVXNNTNXEAGDGTTTATVLARAIAXEGFEKISKGANPIDITX 554
           GV+   + Q+  A L+  V    +   GDGTT+  ++   +  +    +S+G +P  +T 
Sbjct: 165 GVQ-NSQIQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTE 223

Query: 555 GVMLA 569
           G  +A
Sbjct: 224 GFEVA 228


>SB_54944| Best HMM Match : Gal_Lectin (HMM E-Value=9.5e-05)
          Length = 392

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 392 ILEFNTFGDCYAVFCDLRGPPR-LFQNNVXTFWTHCNGY 279
           ++  + + DC+A  CD + PPR L+        T C G+
Sbjct: 105 LITHSCYPDCHAQCCDPKPPPRALYLKRAEKTATACEGH 143


>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/76 (22%), Positives = 32/76 (42%)
 Frame = +3

Query: 345 ITKDGVTVAKGVELKDKFQNIGAXLVQNVXNNTNXEAGDGTTTATVLARAIAXEGFEKIS 524
           +T DG  + + +++K       A  +  +    + E GDGTT+  +LA          + 
Sbjct: 1   MTNDGNAILREIQVKHP----AAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLE 56

Query: 525 KGANPIDITXGVMLAV 572
           +  +P  I     LA+
Sbjct: 57  QQMHPTQIIAAYRLAM 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,007,172
Number of Sequences: 59808
Number of extensions: 253266
Number of successful extensions: 542
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)