Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_H02
(572 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 167 3e-42
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 165 2e-41
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 143 6e-35
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 126 8e-30
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 123 1e-28
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 122 2e-28
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 122 2e-28
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 121 3e-28
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 111 4e-25
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 109 1e-24
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 55 3e-08
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 54 5e-08
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 54 7e-08
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 51 5e-07
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 49 3e-06
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 44 5e-05
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 44 5e-05
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 37 0.008
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 36 0.019
At5g11100.1 68418.m01296 C2 domain-containing protein similar to... 31 0.41
At1g25540.1 68414.m03171 phytochrome and flowering time regulato... 30 0.95
At4g23980.1 68417.m03447 auxin-responsive factor (ARF9) contains... 28 5.1
At1g62250.2 68414.m07023 expressed protein 28 5.1
At1g62250.1 68414.m07022 expressed protein 28 5.1
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 167 bits (407), Expect = 3e-42
Identities = 78/124 (62%), Positives = 97/124 (78%)
Frame = +3
Query: 201 FYAKDVRFGADVRALMLQGVDILADAVAVTMGPKGXNVILEQSWGSPKITKDGVTVAKGV 380
+ AKD+RFG + RALML+GV+ LADAV VTMGPKG NVI+EQSWG+PK+TKDGVTVAK +
Sbjct: 32 YAAKDIRFGVEARALMLRGVEDLADAVKVTMGPKGRNVIIEQSWGAPKVTKDGVTVAKSI 91
Query: 381 ELKDKFQNIGAXLVQNVXNNTNXEAGDGTTTATVLARAIAXEGFEKISKGANPIDITXGV 560
E KD+ +N+GA LV+ V N TN AGDGTT ATVL RAI EG + ++ G N +D+ G+
Sbjct: 92 EFKDRIKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFTEGCKSVAAGMNAMDLRRGI 151
Query: 561 MLAV 572
LAV
Sbjct: 152 KLAV 155
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 165 bits (401), Expect = 2e-41
Identities = 78/127 (61%), Positives = 99/127 (77%), Gaps = 1/127 (0%)
Frame = +3
Query: 195 SRFYA-KDVRFGADVRALMLQGVDILADAVAVTMGPKGXNVILEQSWGSPKITKDGVTVA 371
SR YA K+++FG + RALML+GV+ LADAV VTMGPKG NV++EQSWG+PK+TKDGVTVA
Sbjct: 28 SRNYAAKEIKFGVEARALMLKGVEDLADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVA 87
Query: 372 KGVELKDKFQNIGAXLVQNVXNNTNXEAGDGTTTATVLARAIAXEGFEKISKGANPIDIT 551
K +E KDK +N+GA LV+ V N TN AGDGTT ATVL RAI EG + ++ G N +D+
Sbjct: 88 KSIEFKDKIKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFAEGCKSVAAGMNAMDLR 147
Query: 552 XGVMLAV 572
G+ +AV
Sbjct: 148 RGISMAV 154
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 143 bits (347), Expect = 6e-35
Identities = 72/127 (56%), Positives = 91/127 (71%), Gaps = 1/127 (0%)
Frame = +3
Query: 195 SRFYA-KDVRFGADVRALMLQGVDILADAVAVTMGPKGXNVILEQSWGSPKITKDGVTVA 371
SR YA KD+ FG RA MLQGV +A+AV VTMGPKG NVI+E S+G PKITKDGVTVA
Sbjct: 28 SRNYAAKDISFGIGARAAMLQGVSEVAEAVKVTMGPKGRNVIIESSYGGPKITKDGVTVA 87
Query: 372 KGVELKDKFQNIGAXLVQNVXNNTNXEAGDGTTTATVLARAIAXEGFEKISKGANPIDIT 551
K + + K +NIGA LV+ V + TN AGDGTT ATVL +AI EG + ++ G N +D+
Sbjct: 88 KSISFQAKAKNIGAELVKQVASATNKVAGDGTTCATVLTQAILIEGCKSVAAGVNVMDLR 147
Query: 552 XGVMLAV 572
G+ +A+
Sbjct: 148 VGINMAI 154
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 126 bits (305), Expect = 8e-30
Identities = 66/135 (48%), Positives = 91/135 (67%), Gaps = 2/135 (1%)
Frame = +3
Query: 162 QTVSLHKSYQLSRFYAKDVRFGADVRALM-LQ-GVDILADAVAVTMGPKGXNVILEQSWG 335
Q+++ K+ + AK + F D A+ LQ GV+ LAD V VT+GPKG NV+LE +G
Sbjct: 37 QSIAQRKARFPKIYAAKQLHFNKDGTAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYG 96
Query: 336 SPKITKDGVTVAKGVELKDKFQNIGAXLVQNVXNNTNXEAGDGTTTATVLARAIAXEGFE 515
SP+I DGVTVA+ VEL+D +NIGA LV+ + TN AGDGTTT+ VLA+ + EG +
Sbjct: 97 SPRIVNDGVTVAREVELEDPVENIGAKLVRQAASKTNDLAGDGTTTSVVLAQGLIAEGVK 156
Query: 516 KISKGANPIDITXGV 560
++ GANP+ IT G+
Sbjct: 157 VVAAGANPVLITRGI 171
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 123 bits (296), Expect = 1e-28
Identities = 66/136 (48%), Positives = 87/136 (63%), Gaps = 2/136 (1%)
Frame = +3
Query: 159 RQTVSLHKSYQLSRFYAKDVRFGADVRALM-LQ-GVDILADAVAVTMGPKGXNVILEQSW 332
R V + +S AK++ F D + LQ GV+ LAD V VT+GPKG NV+LE +
Sbjct: 36 RHNVCVRRSRPAIVCAAKELHFNKDGTTIRKLQTGVNKLADLVGVTLGPKGRNVVLESKY 95
Query: 333 GSPKITKDGVTVAKGVELKDKFQNIGAXLVQNVXNNTNXEAGDGTTTATVLARAIAXEGF 512
GSP+I DGVTVA+ VEL+D +NIGA LV+ TN AGDGTTT+ VLA+ EG
Sbjct: 96 GSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGV 155
Query: 513 EKISKGANPIDITXGV 560
+ ++ GANP+ IT G+
Sbjct: 156 KVVAAGANPVLITRGI 171
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 122 bits (294), Expect = 2e-28
Identities = 63/120 (52%), Positives = 82/120 (68%), Gaps = 2/120 (1%)
Frame = +3
Query: 207 AKDVRFGADVRALM-LQ-GVDILADAVAVTMGPKGXNVILEQSWGSPKITKDGVTVAKGV 380
AK++ F D + LQ GV+ LAD V VT+GPKG NV+LE +GSP+I DGVTVA+ V
Sbjct: 56 AKELHFNKDGTTIRRLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREV 115
Query: 381 ELKDKFQNIGAXLVQNVXNNTNXEAGDGTTTATVLARAIAXEGFEKISKGANPIDITXGV 560
EL+D +NIGA LV+ TN AGDGTTT+ VLA+ EG + ++ GANP+ IT G+
Sbjct: 116 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGI 175
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 122 bits (294), Expect = 2e-28
Identities = 63/120 (52%), Positives = 82/120 (68%), Gaps = 2/120 (1%)
Frame = +3
Query: 207 AKDVRFGADVRALM-LQ-GVDILADAVAVTMGPKGXNVILEQSWGSPKITKDGVTVAKGV 380
AK++ F D + LQ GV+ LAD V VT+GPKG NV+LE +GSP+I DGVTVA+ V
Sbjct: 56 AKELHFNKDGTTIRRLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREV 115
Query: 381 ELKDKFQNIGAXLVQNVXNNTNXEAGDGTTTATVLARAIAXEGFEKISKGANPIDITXGV 560
EL+D +NIGA LV+ TN AGDGTTT+ VLA+ EG + ++ GANP+ IT G+
Sbjct: 116 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGI 175
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 121 bits (292), Expect = 3e-28
Identities = 54/121 (44%), Positives = 81/121 (66%)
Frame = +3
Query: 198 RFYAKDVRFGADVRALMLQGVDILADAVAVTMGPKGXNVILEQSWGSPKITKDGVTVAKG 377
R K++ F RA + G+D LAD V +T+GP+G NV+L++ +GSPK+ DGVT+A+
Sbjct: 45 RANVKEIAFDQHSRAALQAGIDKLADCVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARA 103
Query: 378 VELKDKFQNIGAXLVQNVXNNTNXEAGDGTTTATVLARAIAXEGFEKISKGANPIDITXG 557
+EL + +N GA L++ V + TN AGDGTTTA++LAR I G ++ GANP+ + G
Sbjct: 104 IELPNAMENAGAALIREVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRG 163
Query: 558 V 560
+
Sbjct: 164 I 164
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 111 bits (266), Expect = 4e-25
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 2/123 (1%)
Frame = +3
Query: 198 RFYAKDVRFGAD--VRALMLQGVDILADAVAVTMGPKGXNVILEQSWGSPKITKDGVTVA 371
R AK+V F D V + G D++A + VT+GPKG NV+L+ +G P+I DG TV
Sbjct: 37 RAAAKEVHFNRDGSVTKKLQAGADMVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVL 96
Query: 372 KGVELKDKFQNIGAXLVQNVXNNTNXEAGDGTTTATVLARAIAXEGFEKISKGANPIDIT 551
K +EL+D +N+G LV+ TN AGDG+TT+ +LA + EG + IS G NPI +
Sbjct: 97 KEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQVA 156
Query: 552 XGV 560
G+
Sbjct: 157 RGI 159
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 109 bits (263), Expect = 1e-24
Identities = 54/127 (42%), Positives = 79/127 (62%)
Frame = +3
Query: 180 KSYQLSRFYAKDVRFGADVRALMLQGVDILADAVAVTMGPKGXNVILEQSWGSPKITKDG 359
+ + + R AK + +G D R + G+D LADAV++T+GP+G NV+L + + K+ DG
Sbjct: 26 RKFSVVRAGAKRILYGKDSREKLQAGIDKLADAVSITLGPRGRNVVLAEK-DTIKVINDG 84
Query: 360 VTVAKGVELKDKFQNIGAXLVQNVXNNTNXEAGDGTTTATVLARAIAXEGFEKISKGANP 539
VT+AK +EL D +N GA L+Q V N AGDGTTTA +LAR + G I+ GAN
Sbjct: 85 VTIAKSIELPDTIENAGATLIQEVAIKMNESAGDGTTTAIILAREMIKAGSLAIAFGANA 144
Query: 540 IDITXGV 560
+ + G+
Sbjct: 145 VSVKNGM 151
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 55.2 bits (127), Expect = 3e-08
Identities = 31/107 (28%), Positives = 55/107 (51%)
Frame = +3
Query: 231 DVRALMLQGVDILADAVAVTMGPKGXNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIG 410
D+R + ++DAV ++GPKG + ++ + G IT DG T+ +E+
Sbjct: 28 DIRFANINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILNKMEVLQP----A 83
Query: 411 AXLVQNVXNNTNXEAGDGTTTATVLARAIAXEGFEKISKGANPIDIT 551
A ++ + + + AGDGTTT V+A A+ E ++ G +P I+
Sbjct: 84 AKMLVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVIS 130
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 54.4 bits (125), Expect = 5e-08
Identities = 31/115 (26%), Positives = 59/115 (51%)
Frame = +3
Query: 225 GADVRALMLQGVDILADAVAVTMGPKGXNVILEQSWGSPKITKDGVTVAKGVELKDKFQN 404
G D + + +A + ++GPKG + +L+ G IT DG T+ + +++ ++
Sbjct: 26 GIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGATILEQMDVDNQI-- 83
Query: 405 IGAXLVQNVXNNTNXEAGDGTTTATVLARAIAXEGFEKISKGANPIDITXGVMLA 569
A L+ + + + E GDGTT V+A A+ + ++ +G +PI I G +A
Sbjct: 84 --AKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMA 136
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 54.0 bits (124), Expect = 7e-08
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Frame = +3
Query: 225 GADVRALMLQGVDILADAVAVTMGPKGXNVILEQSWG---SPKITKDGVTVAKGVELKDK 395
G R G ++D V T+GPKG + IL QS G + +T DG T+ K + +
Sbjct: 16 GERARMASFVGAMAISDLVKSTLGPKGMDKIL-QSTGRGHAVTVTNDGATILKSLHI--- 71
Query: 396 FQNIGAXLVQNVXNNTNXEAGDGTTTATVLARAIAXEGFEKISKGANPIDITXGVMLA 569
N A ++ ++ + E GDGTT+ VLA + E + ++ +P+ I G +A
Sbjct: 72 -DNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGYRMA 128
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 51.2 bits (117), Expect = 5e-07
Identities = 30/120 (25%), Positives = 57/120 (47%)
Frame = +3
Query: 213 DVRFGADVRALMLQGVDILADAVAVTMGPKGXNVILEQSWGSPKITKDGVTVAKGVELKD 392
D + G DVR + +++ V ++GP G + +L G IT DG T+ + +E+
Sbjct: 13 DRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEV-- 70
Query: 393 KFQNIGAXLVQNVXNNTNXEAGDGTTTATVLARAIAXEGFEKISKGANPIDITXGVMLAV 572
++ A ++ + + E GDGTT+ ++A + + + +P I G LA+
Sbjct: 71 --EHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAM 128
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 48.8 bits (111), Expect = 3e-06
Identities = 26/90 (28%), Positives = 46/90 (51%)
Frame = +3
Query: 267 LADAVAVTMGPKGXNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAXLVQNVXNNTN 446
+ D V T+GP+G + ++ GS I+ DG T+ K +++ + A ++ ++ + +
Sbjct: 35 VGDVVRTTLGPRGMDKLIHDDKGSVTISNDGATIMKLLDI----VHPAAKILVDIAKSQD 90
Query: 447 XEAGDGTTTATVLARAIAXEGFEKISKGAN 536
E GDGTTT +LA E I G +
Sbjct: 91 SEVGDGTTTVVLLAAEFLKEAKPFIEDGVH 120
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 44.4 bits (100), Expect = 5e-05
Identities = 28/101 (27%), Positives = 48/101 (47%)
Frame = +3
Query: 267 LADAVAVTMGPKGXNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAXLVQNVXNNTN 446
L D + +GPKG +L G K+TKDG T+ K +++ QN A ++ +
Sbjct: 29 LQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQI----QNPTAIMIARTAVAQD 84
Query: 447 XEAGDGTTTATVLARAIAXEGFEKISKGANPIDITXGVMLA 569
+GDGTT+ + + + I +G +P + G +A
Sbjct: 85 DISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIA 125
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 44.4 bits (100), Expect = 5e-05
Identities = 28/101 (27%), Positives = 48/101 (47%)
Frame = +3
Query: 267 LADAVAVTMGPKGXNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAXLVQNVXNNTN 446
L D + +GPKG +L G K+TKDG T+ K +++ QN A ++ +
Sbjct: 29 LQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQI----QNPTAIMIARTAVAQD 84
Query: 447 XEAGDGTTTATVLARAIAXEGFEKISKGANPIDITXGVMLA 569
+GDGTT+ + + + I +G +P + G +A
Sbjct: 85 DISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIA 125
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 37.1 bits (82), Expect = 0.008
Identities = 27/116 (23%), Positives = 51/116 (43%)
Frame = +3
Query: 225 GADVRALMLQGVDILADAVAVTMGPKGXNVILEQSWGSPKITKDGVTVAKGVELKDKFQN 404
G+ V +Q +AD + T+GP+ +L + G +T DG + + +++ +
Sbjct: 17 GSKVHHGNIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTNDGNAILRELDV----AH 72
Query: 405 IGAXLVQNVXNNTNXEAGDGTTTATVLARAIAXEGFEKISKGANPIDITXGVMLAV 572
A + + + E GDGTT+ VLA + + K +P I + A+
Sbjct: 73 PAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVICRAYIKAL 128
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 35.9 bits (79), Expect = 0.019
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 411 AXLVQNVXNNTNXEAGDGTTTATVLARAIAXEGFEKISKGANPIDITXGVMLA 569
A L+ + + + E GDGTT V+A A+ + ++ +G +PI I G +A
Sbjct: 8 AKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMA 60
>At5g11100.1 68418.m01296 C2 domain-containing protein similar to
Ca2+-dependent lipid-binding protein (CLB1) GI:2789434
from [Lycopersicon esculentum]
Length = 574
Score = 31.5 bits (68), Expect = 0.41
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 294 GPKGXNVILEQSW-GSPKITKDGVTVAKGVELKDKFQNIG 410
GP G + LE W G+PKI D V GV L + +NIG
Sbjct: 144 GPNGITMELEMQWDGNPKIVLD-VKTLLGVSLPIEVKNIG 182
>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
protein (PFT1) PMID: 12815435
Length = 836
Score = 30.3 bits (65), Expect = 0.95
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Frame = -2
Query: 424 CTXLAPMFWNLSLSSTPL----ATVTPSFVIFGDPQDCSRITFXPF--------GPIVTA 281
C L+ NL + +P+ ATV PS + G P P GP+ TA
Sbjct: 232 CAALSHSATNLPQTQSPVKVDRATVAPSIPVTGQPPAPVSSANGPIQNRQPVSVGPVPTA 291
Query: 280 TASARMSTPCSMRALTSAPNLTSLA 206
T ST SM + S P++ ++A
Sbjct: 292 TVKVEPSTVTSMAPVPSFPHIPAVA 316
>At4g23980.1 68417.m03447 auxin-responsive factor (ARF9) contains
Pfam profiles: PF02309 AUX/IAA family and PF02362: B3
DNA binding domain
Length = 638
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 278 RSRYNGSKRX-KRYSGTILGVPEDHKRRRNSRQRC 379
+ R+ G +RYSGT++GV + ++S+ RC
Sbjct: 285 KMRFEGEDSPERRYSGTVIGVKDCSPHWKDSKWRC 319
>At1g62250.2 68414.m07023 expressed protein
Length = 223
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 319 RITFXPFGPIVTATASARMSTPCS 248
R PFGP+++ + S R PCS
Sbjct: 25 RFKTSPFGPLISCSVSPRSIVPCS 48
>At1g62250.1 68414.m07022 expressed protein
Length = 267
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 319 RITFXPFGPIVTATASARMSTPCS 248
R PFGP+++ + S R PCS
Sbjct: 25 RFKTSPFGPLISCSVSPRSIVPCS 48
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,503,222
Number of Sequences: 28952
Number of extensions: 184790
Number of successful extensions: 479
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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