Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_H01
(651 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 258 3e-69
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.) 244 4e-65
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.) 191 4e-49
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.) 161 6e-40
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 92 3e-19
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19) 90 2e-18
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23) 83 2e-16
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 3e-16
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24) 79 3e-15
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05) 72 4e-13
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 7e-11
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11) 52 3e-07
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06) 39 0.003
SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2) 37 0.016
SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39) 34 0.12
SB_24760| Best HMM Match : PT (HMM E-Value=0.17) 31 0.81
SB_6387| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42) 30 1.4
SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035) 30 1.4
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_3760| Best HMM Match : SVA (HMM E-Value=0.19) 29 4.3
SB_26973| Best HMM Match : DUF471 (HMM E-Value=1.1) 28 5.7
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_15696| Best HMM Match : DUF282 (HMM E-Value=2.5) 28 7.6
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 258 bits (632), Expect = 3e-69
Identities = 114/162 (70%), Positives = 134/162 (82%)
Frame = +1
Query: 103 PRVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQ 282
PRVFFD+T+ + G+IV+ELRSDV P T ENFR LCT EKGFGYKGS FHR+IP FM Q
Sbjct: 137 PRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQFMCQ 196
Query: 283 GGDFTNHNGTGGKSIYGNKFEXENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSXLD 462
GGDFT HNGTGGKSIYG KFE ENF LKHTG GVLSMAN+G +TNGSQFF+TT KT LD
Sbjct: 197 GGDFTKHNGTGGKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTNGSQFFLTTEKTDWLD 256
Query: 463 GRHVVFGNVVEGMEVVKQIETFGSQSGXTSNRIVIKDCGQIA 588
G+HVVFGNV+EG +VV+++E GSQSG S ++VI DCG+++
Sbjct: 257 GKHVVFGNVIEGFDVVRKMEAVGSQSGKASKKVVIDDCGELS 298
>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 244 bits (598), Expect = 4e-65
Identities = 111/158 (70%), Positives = 127/158 (80%)
Frame = +1
Query: 112 FFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGD 291
+FD+ + AP G+IV+ELR DV PKT ENFRALCTGEKGFGYKGS FHRVIP FM QGGD
Sbjct: 6 YFDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPGFMCQGGD 65
Query: 292 FTNHNGTGGKSIYGNKFEXENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSXLDGRH 471
FT +GTGGKSIYG KF ENF LKHTGPG+LSMANAG TNGSQFF+ T KTS LDG+H
Sbjct: 66 FTRGDGTGGKSIYGAKFADENFNLKHTGPGILSMANAGPGTNGSQFFLCTAKTSWLDGKH 125
Query: 472 VVFGNVVEGMEVVKQIETFGSQSGXTSNRIVIKDCGQI 585
VVFG+V +GM+VVK+IE GS SG TS ++VI D +
Sbjct: 126 VVFGSVKDGMDVVKKIEKVGSDSGKTSKKVVIADSASV 163
>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 191 bits (466), Expect = 4e-49
Identities = 87/139 (62%), Positives = 106/139 (76%)
Frame = +1
Query: 106 RVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQG 285
+V+ DV++ P G++++ L D PKT NF AL E+GFGYK SIFHRVI NFM+QG
Sbjct: 27 KVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQGFGYKDSIFHRVIKNFMIQG 86
Query: 286 GDFTNHNGTGGKSIYGNKFEXENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSXLDG 465
GDFTN +GTGG SIYG F+ ENF LKH GPG L MANAG +TNGSQF+ITT+KTS LDG
Sbjct: 87 GDFTNKDGTGGYSIYGKYFDDENFNLKHYGPGWLCMANAGKNTNGSQFYITTIKTSWLDG 146
Query: 466 RHVVFGNVVEGMEVVKQIE 522
H FG V+EGM+VV++IE
Sbjct: 147 SHTCFGKVLEGMDVVRRIE 165
>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 161 bits (390), Expect = 6e-40
Identities = 88/152 (57%), Positives = 103/152 (67%), Gaps = 18/152 (11%)
Frame = +1
Query: 106 RVFFDVTVDDAPLGKI------VIELRSDVTPKTCE-----NFRAL-----CT--GEKGF 231
+VFFD+T+ G+I +I+ + + E NFR CT +KGF
Sbjct: 28 KVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIGTNFRYFDTYYCCTIESQKGF 87
Query: 232 GYKGSIFHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEXENFTLKHTGPGVLSMANAGAD 411
GYK SIFHRVI +FM+QGGDFT +GTGGKSIYG KF ENF L+H G G LSMANAG D
Sbjct: 88 GYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKFADENFKLQHYGAGWLSMANAGKD 147
Query: 412 TNGSQFFITTVKTSXLDGRHVVFGNVVEGMEV 507
TNGSQFFITTVKT LDGRHVVFG V++GMEV
Sbjct: 148 TNGSQFFITTVKTPWLDGRHVVFGKVLKGMEV 179
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 92.3 bits (219), Expect = 3e-19
Identities = 40/75 (53%), Positives = 56/75 (74%)
Frame = +1
Query: 364 KHTGPGVLSMANAGADTNGSQFFITTVKTSXLDGRHVVFGNVVEGMEVVKQIETFGSQSG 543
+H PG+LSMAN+G +TNGSQFFITTV T LDGRHVVFG V++GM+VV+++E
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLKGMDVVRELEATPVDDS 247
Query: 544 XTSNRIVIKDCGQIA 588
+ +I++CG++A
Sbjct: 248 SPKSPCIIEECGELA 262
>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
Length = 99
Score = 89.8 bits (213), Expect = 2e-18
Identities = 43/73 (58%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Frame = +1
Query: 304 NGTGGKSIYGNKFEXE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSXLDGRHVVF 480
+GTGG+SI+G +FE E + L+H P +SMANAG +TNGSQFFIT V T LD +H VF
Sbjct: 2 DGTGGESIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVF 61
Query: 481 GNVVEGMEVVKQI 519
G VV+GM+V +QI
Sbjct: 62 GRVVKGMDVAQQI 74
>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
Length = 378
Score = 83.0 bits (196), Expect = 2e-16
Identities = 44/95 (46%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Frame = +1
Query: 304 NGTGGKSIYGNKFEXENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSXLDGRHVVFG 483
NGTGG+SIYG F E F KH P +LSMAN G +TNGSQFFI HVVFG
Sbjct: 25 NGTGGESIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFII----------HVVFG 74
Query: 484 NVVEGMEVVKQIETFGSQSGXTSNR-IVIKDCGQI 585
+V++G E+V+QIE+ + N + + +CG++
Sbjct: 75 HVIQGEELVRQIESLPTNEKNRPNADVKVSNCGEL 109
>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 82.2 bits (194), Expect = 3e-16
Identities = 38/65 (58%), Positives = 47/65 (72%)
Frame = +1
Query: 391 MANAGADTNGSQFFITTVKTSXLDGRHVVFGNVVEGMEVVKQIETFGSQSGXTSNRIVIK 570
MANAG DTNGSQFFITTVKTS LDG+HVVFG V+EGM+VV+++E + +I
Sbjct: 1 MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKLENVNVKGSTPVKTCMID 60
Query: 571 DCGQI 585
D G +
Sbjct: 61 DSGTL 65
>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
Length = 145
Score = 79.0 bits (186), Expect = 3e-15
Identities = 37/91 (40%), Positives = 54/91 (59%)
Frame = +1
Query: 307 GTGGKSIYGNKFEXENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSXLDGRHVVFGN 486
G GG+S+YG FE E+F++ H GV+ MAN G TNGSQF+IT +D ++V FG
Sbjct: 46 GIGGESVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKYVAFGQ 105
Query: 487 VVEGMEVVKQIETFGSQSGXTSNRIVIKDCG 579
V+EG+ V+ +E + + + DCG
Sbjct: 106 VIEGLNVLDVLEGQETFNERPKVECRVADCG 136
>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
Length = 49
Score = 72.1 bits (169), Expect = 4e-13
Identities = 32/46 (69%), Positives = 40/46 (86%)
Frame = +1
Query: 382 VLSMANAGADTNGSQFFITTVKTSXLDGRHVVFGNVVEGMEVVKQI 519
+LSMANAG TNGSQFF+ T KTS LDG+HVVFG+V +GM+VVK++
Sbjct: 2 ILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKM 47
>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 64.5 bits (150), Expect = 7e-11
Identities = 52/132 (39%), Positives = 70/132 (53%), Gaps = 6/132 (4%)
Frame = +1
Query: 142 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGK 321
LG+I IEL +D P + NF A + G+ Y G+ FHRVIP FM+QGG F + +
Sbjct: 32 LGEIEIELDADKAPISTANFLAYV--DSGY-YAGTQFHRVIPGFMVQGGGF-DADMQQKD 87
Query: 322 SIYGNKFEXENFTLKHTGPGVLSMANAGA-DTNGSQFFITTVKTSXLDG-----RHVVFG 483
+ K E +N H G L+MA D+ SQFFI + LD + VFG
Sbjct: 88 TQAPIKNEADNGL--HNVRGTLAMARTQVRDSATSQFFINHKDNAFLDHGSRDFGYAVFG 145
Query: 484 NVVEGMEVVKQI 519
VV+GM+VV +I
Sbjct: 146 KVVKGMDVVDKI 157
>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
Length = 48
Score = 52.4 bits (120), Expect = 3e-07
Identities = 26/46 (56%), Positives = 30/46 (65%), Gaps = 8/46 (17%)
Frame = +1
Query: 145 GKIVIELRSDVTPKTCENFRALCTGEKGFG--------YKGSIFHR 258
G+++ EL +D PKT ENFRALCTGEKG G YKG FHR
Sbjct: 2 GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47
>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +1
Query: 367 HTGPGVLSMANAGADTNGSQFFITTVKTSXLDGRHVVFG 483
H G +SMAN G ++NGSQFFI K LD ++ +FG
Sbjct: 301 HNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKYTMFG 339
>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
Length = 454
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/65 (40%), Positives = 35/65 (53%)
Frame = +1
Query: 142 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGK 321
+G I IEL TPK C NF LC +G+ Y +IFHR++ +GG+ N G G
Sbjct: 12 VGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIV-----KGGE--NIYGQSGF 61
Query: 322 SIYGN 336
+ GN
Sbjct: 62 KVTGN 66
>SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2)
Length = 175
Score = 36.7 bits (81), Expect = 0.016
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +1
Query: 469 HVVFGNVVEGMEVVKQIETFGSQSGXTSNR-IVIKDCGQI 585
HVVFG+V++G E+V+QIE+ + N + + +CG++
Sbjct: 3 HVVFGHVIQGEELVRQIESLPTNEKNRPNADVKVSNCGEL 42
>SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39)
Length = 432
Score = 33.9 bits (74), Expect = 0.12
Identities = 26/104 (25%), Positives = 45/104 (43%)
Frame = +2
Query: 41 ALSLWWFCKLLTLLIPAKCLYHEYSSTSLLTMPHWEKLLLS*EVTSLPRRVKTSVPCALA 220
ALS C+L L C S +L T E LS V+ + + T+V C L
Sbjct: 326 ALSTTVSCQLKALSTTVSC-----QSKALSTTVSCELKALSTTVSCELKALSTTVSCQLK 380
Query: 221 RKASVTRAPFSIVSSPISCCKEGTSPTITALGESPSTAISLXTR 352
++ +S+ +SC + S T++ ++ ST +S ++
Sbjct: 381 ALSTTVSCELKALSTTVSCQSKALSTTVSCQSKALSTTVSCQSK 424
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/79 (22%), Positives = 37/79 (46%)
Frame = +2
Query: 116 STSLLTMPHWEKLLLS*EVTSLPRRVKTSVPCALARKASVTRAPFSIVSSPISCCKEGTS 295
S +L T + LS V+ + + T+V C L ++ +S+ +SC + S
Sbjct: 324 SKALSTTVSCQLKALSTTVSCQSKALSTTVSCELKALSTTVSCELKALSTTVSCQLKALS 383
Query: 296 PTITALGESPSTAISLXTR 352
T++ ++ ST +S ++
Sbjct: 384 TTVSCELKALSTTVSCQSK 402
>SB_24760| Best HMM Match : PT (HMM E-Value=0.17)
Length = 422
Score = 31.1 bits (67), Expect = 0.81
Identities = 18/46 (39%), Positives = 19/46 (41%)
Frame = -2
Query: 509 TTSMPSTTFPKTTCLPSXQEVLTVVMKNWEPLVSAPALAMERTPGP 372
TT PST P T PS E +T WEP P PGP
Sbjct: 34 TTGEPSTWEPMTGA-PSTWEPMTGAPSTWEPWTDGPGPYPTDGPGP 78
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -2
Query: 482 PKTTCLPSXQEVLTVVMKNWEPLVSAPALAMERTPGP 372
P TT PS E +T WEP+ AP+ T GP
Sbjct: 32 PFTTGEPSTWEPMTGAPSTWEPMTGAPSTWEPWTDGP 68
>SB_6387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 31.1 bits (67), Expect = 0.81
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 512 LTTSMPSTTFPKTTCLPSXQEVLTVVMKNWEPLVSAPALAMERTPGP 372
L+ + + FP TT P + T + EPL+ P +R P P
Sbjct: 13 LSATQLTAAFPTTTTTPVTTQTTTTDVSRTEPLIELPTAQEKRKPCP 59
>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
Length = 1207
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -1
Query: 177 DVTSQL-NNNFSQWGIVNSDVEEYSW*RHFAGISNVSNLQNHHNDNASLVNAGRE 16
DV S L S WGI + D+E+ W + I+ L++ H D+A ++ G+E
Sbjct: 90 DVCSTLFQEELSYWGINDRDMEQCCWAHYKRQINTEETLKSFHLDSARKMD-GKE 143
>SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)
Length = 885
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +1
Query: 136 APLGKIVIELRSDVTPKTCENFRALCTG 219
AP I+I L S V+PKT E+ R LC G
Sbjct: 569 APKIDIIIALDSGVSPKTFEDERQLCAG 596
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = -1
Query: 183 GSDVTSQLNNNFSQWGIVNSDVEEYSW*RHFAGISNVSNLQNHHNDNASLVNAG 22
G++ + NNN++ GI N++ Y+ +G SN N N +N+NA N G
Sbjct: 352 GANNNNNKNNNYNS-GINNNNNNNYN-----SGSSNGRNTNNGNNNNAGTSNVG 399
>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2014
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 215 VHRARKFSHVLGV--TSLLSSITIFPSGASSTVTSKNTRGRDILPV 84
+ + KF+H+ G+ TS T+F +T T TR RD++ +
Sbjct: 168 IQQLHKFTHIHGMLSTSSRGRYTLFRGQYDTTATQIYTRSRDVIDI 213
>SB_3760| Best HMM Match : SVA (HMM E-Value=0.19)
Length = 259
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = -2
Query: 485 FPKTTCLPSXQE-----VLTVVMKNWEPLVSAPALAMERTPGP 372
FP+ + LP E +LT++++N P ++APA + P P
Sbjct: 81 FPQPSLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123
>SB_26973| Best HMM Match : DUF471 (HMM E-Value=1.1)
Length = 674
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 221 RKASVTRAPFSIVSSPISCCKEGTSPTITALGESP 325
+K R S V SC +EG SPT T+ G++P
Sbjct: 276 KKPFSNREAHSCVELCRSCVREGCSPTPTSRGDAP 310
>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1110
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Frame = -2
Query: 485 FPKTTCLPSXQE-----VLTVVMKNWEPLVSAPALAMERTPGP 372
FP+ LP E +LT++++N P ++APA + P P
Sbjct: 81 FPQPPLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123
>SB_15696| Best HMM Match : DUF282 (HMM E-Value=2.5)
Length = 128
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 206 PCALARKASVTRAPFSIVSSPISCCKE-GTSPTITA-LGESPST 331
PCALA SV+ P S VSS + G S TI+A SP T
Sbjct: 48 PCALATAPSVSEVPASTVSSSSPLRRSPGPSGTISASTSGSPRT 91
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,232,643
Number of Sequences: 59808
Number of extensions: 480127
Number of successful extensions: 1463
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1455
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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