Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_G24
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 157 1e-39
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po... 38 0.001
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 26 4.1
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 26 5.4
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 26 5.4
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 7.2
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 7.2
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 25 7.2
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 25 7.2
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.5
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 157 bits (381), Expect = 1e-39
Identities = 72/165 (43%), Positives = 101/165 (61%), Gaps = 1/165 (0%)
Frame = +3
Query: 156 TLPEIFKYVXXNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDKLKEVGATTELR 335
+L ++++ + KD + L AV+IPSVS DV R + M ++ + ++GA E R
Sbjct: 2 SLDKLYEVIDKKKDEFVTRLSRAVSIPSVSADVTLRPKVVEMADFVVSEFTKLGAKMEKR 61
Query: 336 DVGFQTIDGKDVQXXXXXXXXXGNDPKKNTVCIYGHLDVQPALKSDGWETEPFEL-VERN 512
D+G+ +DG+DV GNDP K TV IY H DVQPA DGW T+PF L V+
Sbjct: 62 DIGYHQMDGQDVPLPPIVLGQYGNDPSKKTVLIYNHFDVQPASLEDGWSTDPFTLTVDNK 121
Query: 513 EKLYGRGSTDDKGPVLGWLHTINAYKGTGAELPVNLKFIFECMEE 647
+++GRG+TDDKGP++GW+ I A+K G + PVNL FE MEE
Sbjct: 122 GRMFGRGATDDKGPLIGWISAIEAHKELGIDFPVNLLMCFEGMEE 166
>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 596
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +3
Query: 402 GNDPKKNTVCIYGHLDVQPALKS--DGWETEPFELVERNEKLYGRGSTDDKGPVLGWLHT 575
G++ + + GH DV P ++ D W PF N +Y RG+ DDK V+ L
Sbjct: 184 GSNKDLKPLVLMGHQDVVPVNQASLDRWYFPPFSATYHNGHVYSRGAADDKNSVVAILEA 243
Query: 576 I 578
+
Sbjct: 244 L 244
>SPBC19C7.08c |||leucine carboxyl
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 681
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 459 QVVHPNDHRYKLYFFLDHYPIR 394
++V P D + YFFL HY I+
Sbjct: 295 EMVEPFDEWEEFYFFLQHYSIQ 316
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 549 GPVLGWL-HTINAYKGTGAELPVNLKFIFECMEES 650
GP L ++ TIN Y+GTG L +LK + + E+S
Sbjct: 401 GPYLVFMASTINGYEGTGRSL--SLKLLQQLREQS 433
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1136
Score = 25.8 bits (54), Expect = 5.4
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +3
Query: 18 INRATCIFNTLIKLPATKQLVPFFPAYHQHYSVSSKQVSAKMATE-KTLPEIFKYVXXNK 194
++ C NT+ L + + FF A + S Q+S AT +L IF
Sbjct: 750 VDSTNCNLNTMEALASVNTALQFFSALNYSECFSESQISPLHATVISSLSAIF----IRD 805
Query: 195 DSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWM 293
D+ L+ E V + +Y A C++++ W+
Sbjct: 806 DTENDLVTELV--EKLFLFKQYNA-CMQLIGWL 835
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 448 MYNLH*NLMDGRLNLLN*LSAMKNYMEEVLLM 543
+YN + N RLN A+KNYMEE+ L+
Sbjct: 435 LYNFNGNANPSRLN-----PALKNYMEELKLL 461
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 516 FHCAQLVQKVQSPIHQISMQVVHPNDHR 433
FH + + + IH+I +Q VH DH+
Sbjct: 796 FHWSGDLINIADGIHEIKLQRVHSQDHQ 823
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 529 LPYNFSLRSTSSKGSVSHPSDFNAGCTSK*P*IQTVFFF 413
L Y L ST+ + S+S S FN + + I+T+ FF
Sbjct: 406 LRYTNDLASTNKRFSLSEASSFNVWSSVRKRAIETIEFF 444
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 411 PKKNTVCIYGHLDVQPALKSDGWETEPFELVERNEKL 521
P + I DV+P LKS + P E R EKL
Sbjct: 311 PLLEFIAIMDIKDVRPVLKSYQGKNIPLEYARREEKL 347
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 485 SLPSIRFQCRLYIQMTIDTNCIFFW 411
SLPS+R C+LY ++I + F W
Sbjct: 4083 SLPSVRLACQLY-GVSIQSLVFFTW 4106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,266
Number of Sequences: 5004
Number of extensions: 57004
Number of successful extensions: 160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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