Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_G24
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0374 + 28381456-28381785,28382302-28382555,28382665-283827... 36 0.021
06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016 33 0.15
06_03_0054 - 16038103-16038251,16038256-16038619 29 2.4
09_02_0595 - 11051728-11051955,11052032-11052127,11052134-11052739 29 3.2
12_02_0653 + 21545862-21546584,21546661-21546696,21547182-215474... 29 4.2
01_01_0050 - 382451-382864,382950-383020,383131-383176,383302-38... 29 4.2
11_06_0093 + 19999503-20000231,20000308-20000742,20000829-200016... 28 5.6
12_01_0857 - 8043765-8043839,8044215-8044497,8044578-8044748,804... 28 7.4
>02_05_0374 +
28381456-28381785,28382302-28382555,28382665-28382773,
28383272-28383410,28383525-28383582,28384179-28384196,
28384301-28384423,28384483-28384681,28384763-28384796,
28385044-28385153
Length = 457
Score = 36.3 bits (80), Expect = 0.021
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +3
Query: 441 HLDVQPALKSDGWETEPFELV---ERNEKLYGRGSTDDKGPV 557
H+DV PA D W+ +PF L E +KL GRG+TD G V
Sbjct: 99 HMDVVPA-NPDEWDFDPFSLTFDSEDKDKLRGRGTTDCLGHV 139
>06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016
Length = 441
Score = 33.5 bits (73), Expect = 0.15
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 402 GNDPKKNTVCIYGHLDVQPALKSDGWETEPFELVE--RNEKLYGRGSTDDKGPVLGWLHT 575
G DP ++ + HLD PA + + W PF ++Y RG+ DDK + +L
Sbjct: 97 GTDPSLPSLLLNSHLDSVPA-EPEQWLHPPFAAHRDAATGRVYARGAQDDKCLPIQYLEA 155
Query: 576 INAYKGTG 599
I + G
Sbjct: 156 IRGLRDAG 163
>06_03_0054 - 16038103-16038251,16038256-16038619
Length = 170
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 204 KQLLKEAVAIPSVSCDVKYRADCIRMV-HWMQDKLKEVGATTELRDVGFQTID 359
K +L +P+ VK +C + HW+Q+K K+ G T +G Q D
Sbjct: 11 KDILDNKRPLPTTKV-VKLTEECSNAILHWLQEKKKDPGCPTITCSIGRQHFD 62
>09_02_0595 - 11051728-11051955,11052032-11052127,11052134-11052739
Length = 309
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 294 QDKL-KEVGATTELRDVGFQTIDGKDVQXXXXXXXXXGNDPKKNTVCIYGHLDVQP-ALK 467
Q+K+ KEV TE+ DVG+ T K V+ G ++N + H+D+ P K
Sbjct: 17 QNKIPKEVYTITEMDDVGYPTAPTKAVKKFPTICGVLG---RRNFTILKDHIDLVPQEEK 73
Query: 468 SDGW 479
+ W
Sbjct: 74 EEAW 77
>12_02_0653 +
21545862-21546584,21546661-21546696,21547182-21547401,
21547590-21548025,21548103-21548273,21548354-21548636,
21548716-21548829,21549012-21549082,21549417-21549429
Length = 688
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 294 QDKL-KEVGATTELRDVGFQTIDGKDVQXXXXXXXXXGNDPKKNTVCIYGHLDVQP-ALK 467
Q+K+ KEV TE+ DVG+ T K V+ G ++N + H+D+ P K
Sbjct: 24 QNKIPKEVYTITEVDDVGYPTAPTKAVKKFPTICGVLG---RRNFTILKDHIDLVPQEEK 80
Query: 468 SDGW 479
+ W
Sbjct: 81 EEAW 84
>01_01_0050 -
382451-382864,382950-383020,383131-383176,383302-383333,
383409-383558,383666-383849,383934-384109,384580-384628,
384724-384923,385515-385548
Length = 451
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Frame = +3
Query: 408 DPKKNTVCIYGHLDVQPALKSDGWETEPFELVERNEKLYGRGSTDDKGPVLGWLHT---I 578
DP+ N+ + Q + + +P+E V+ + + P L W T +
Sbjct: 79 DPQPNSTDVAAVASQQAGIANQSAGVQPYETVQAPQAINTGPIVPHAQPQLSWSRTLIGV 138
Query: 579 NAYKGTGAELPVNLKFIF 632
+ G GA V LK +F
Sbjct: 139 GVFLGVGASAAVILKKLF 156
>11_06_0093 +
19999503-20000231,20000308-20000742,20000829-20001670,
20001748-20001916
Length = 724
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 294 QDKL-KEVGATTELRDVGFQTIDGKDVQXXXXXXXXXGNDPKKNTVCIYGHLDVQP-ALK 467
Q+K+ KEV TE+ DVG+ T K V+ G ++N + H+D+ P K
Sbjct: 24 QNKIPKEVYTITEVDDVGYPTAPTKVVKKFPTICGVLG---RRNFTILKDHIDLVPQEEK 80
Query: 468 SDGW 479
+ W
Sbjct: 81 EEAW 84
>12_01_0857 -
8043765-8043839,8044215-8044497,8044578-8044748,
8044826-8045670,8045828-8046262,8046339-8046563,
8046700-8046781,8046814-8047067
Length = 789
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 306 KEVGATTELRDVGFQTIDGKDVQXXXXXXXXXGNDPKKNTVCIYGHLDVQP-ALKSDGW 479
KEV TE+ DVG+ T K V+ G ++N + H+D+ P K + W
Sbjct: 29 KEVYTITEVDDVGYPTAPTKAVKKFPTICGVLG---RRNFTILKDHIDLVPQEEKEEAW 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,364,172
Number of Sequences: 37544
Number of extensions: 344661
Number of successful extensions: 740
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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