Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_G24
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9197| Best HMM Match : ITAM (HMM E-Value=4.2)                       42   4e-04
SB_39672| Best HMM Match : Peptidase_M20 (HMM E-Value=9.9e-09)         36   0.038
SB_59218| Best HMM Match : M20_dimer (HMM E-Value=2)                   35   0.050
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_18285| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_28679| Best HMM Match : RVT_1 (HMM E-Value=9.3e-08)                 28   7.6  

>SB_9197| Best HMM Match : ITAM (HMM E-Value=4.2)
          Length = 75

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +3

Query: 417 KNTVCIYGHLDVQPALKSDGWET--EPFELVERNEKLYGRGSTDDKGPVLGWLHTINAYK 590
           ++TV +YGHLD QP  +  GW     P+     + KLYGRG  DD   V   L  I A +
Sbjct: 15  RDTVLLYGHLDKQP--EFSGWRAGLGPWTPKYEDGKLYGRGGADDGYAVYASLTAIMALE 72

Query: 591 G 593
           G
Sbjct: 73  G 73


>SB_39672| Best HMM Match : Peptidase_M20 (HMM E-Value=9.9e-09)
          Length = 702

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +3

Query: 402 GNDPKKNTVCIYGHLDVQPALKSDGWETEPFELVERNEKLYGRGSTDDKGPVLGWLHTIN 581
           G++       I  HLDV PA  S  W+  PF+   ++  ++GRG+ D K  V+  L  + 
Sbjct: 454 GSNSTLRPYMIASHLDVVPAPGS--WDVPPFDGRVKDGYIWGRGTLDVKNGVMASLEAVQ 511

Query: 582 A 584
           A
Sbjct: 512 A 512


>SB_59218| Best HMM Match : M20_dimer (HMM E-Value=2)
          Length = 233

 Score = 35.1 bits (77), Expect = 0.050
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 15/105 (14%)
 Frame = +3

Query: 168 IFKYVXXNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDK--------------L 305
           IF +V  +++ Y + L +AVAI SVS   + R +  +MV+ + +K              L
Sbjct: 36  IFVFVY-SQELYIKRLADAVAIKSVSAWPETRGEITKMVNHVAEKIRCKIYKVYRVLMEL 94

Query: 306 KEVGATTELRDVGFQTI-DGKDVQXXXXXXXXXGNDPKKNTVCIY 437
           K++G   EL DVG +T+ DG  +          G++P K T   Y
Sbjct: 95  KKLGTEVELVDVGTETLPDGSTLPLPPVLLGILGSNPAKKTPVDY 139


>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2529

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +3

Query: 36   IFNTLIK-LPATKQLVPFFPAYHQHYSV-SSKQVSAKMATEKTLPEI 170
            IF  L K +  TK  VP   A  + + V SSK VS + AT  TLPE+
Sbjct: 1653 IFQRLDKRVTKTKSSVPLLAALRRCFVVASSKDVSPRRATTVTLPEL 1699


>SB_18285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1094

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 607 SSAPVPL*ALMVCSQPSTGPLSSVEPLPY-NFSLRSTSSKG 488
           +  P P+ A    + P+TGP+S + PL   N SL + S  G
Sbjct: 754 AKVPAPVTATAGAATPATGPISGMAPLSQANSSLLANSPAG 794


>SB_28679| Best HMM Match : RVT_1 (HMM E-Value=9.3e-08)
          Length = 948

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 162 PEIFKYVXXNKDSYKQLLKEAVAIPSVSCDVKYRA--DCIRMVHWMQDKLKEVG 317
           P +F  +  N    + + +  +   + S D+K+ A  DC+  +H  +D L E+G
Sbjct: 661 PPVFDPIMVNNTELECVSQAKILGVTFSSDLKWNAHMDCLAFIHSPEDLLMELG 714


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,267,462
Number of Sequences: 59808
Number of extensions: 405286
Number of successful extensions: 1035
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)