Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_G24
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17830.1 68417.m02659 peptidase M20/M25/M40 family protein si...    38   0.006
At1g44820.1 68414.m05134 aminoacylase, putative / N-acyl-L-amino...    36   0.023
At4g11030.1 68417.m01794 long-chain-fatty-acid--CoA ligase, puta...    28   4.7  
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf...    28   6.2  
At4g12650.1 68417.m01990 endomembrane protein 70, putative TM4 f...    27   8.2  
At3g29375.1 68416.m03690 XH domain-containing protein contains P...    27   8.2  
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf...    27   8.2  
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf...    27   8.2  

>At4g17830.1 68417.m02659 peptidase M20/M25/M40 family protein
           similar to acetylornithine deacetylase
           (Acetylornithinase, AO; N-acetylornithinase, NAO)
           [Dictyostelium discoideum] SWISS-PROT:P54638
          Length = 440

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 22/52 (42%), Positives = 28/52 (53%)
 Frame = +3

Query: 402 GNDPKKNTVCIYGHLDVQPALKSDGWETEPFELVERNEKLYGRGSTDDKGPV 557
           G+ P K    +  H+DV  A   D WE +PF L    +KL GRG+TD  G V
Sbjct: 88  GSVPGKILSFVGMHMDVVTA-NPDDWEFDPFSLSIDGDKLRGRGTTDCLGHV 138


>At1g44820.1 68414.m05134 aminoacylase, putative /
           N-acyl-L-amino-acid amidohydrolase, putative similar to
           aminoacylase-1 (N-acyl-L-amino-acid amidohydrolase
           ACY-1)[Homo sapiens] SWISS-PROT:Q03154
          Length = 438

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 402 GNDPKKNTVCIYGHLDVQPALKSDGWETEPFELVERNE-KLYGRGSTDDKGPVLGWLHTI 578
           G++P   ++    HLD  PA +S+ W   PF   +  +  +Y RG+ DDK   + +L +I
Sbjct: 84  GSNPNLPSILFNSHLDSVPA-ESEKWTYPPFSAHKTIDGHIYARGAQDDKCIGVQYLESI 142

Query: 579 NAYKGTG 599
              K  G
Sbjct: 143 RNLKSRG 149


>At4g11030.1 68417.m01794 long-chain-fatty-acid--CoA ligase,
           putative / long-chain acyl-CoA synthetase, putative
           similar to acyl-CoA synthetase (MF7P) gi:1617270 from
           Brassica napus
          Length = 666

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = +3

Query: 108 YSVSSKQVSAKMATEKTLPEIFKYVXXNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVH 287
           + +S  +VS     EK +PE+FK    N   Y   +K  V+   V  + K  A+ + +V 
Sbjct: 145 FIISHAEVSIAFVEEKKIPELFK-TCPNSTKY---MKTVVSFGGVKPEQKEEAEKLGLVI 200

Query: 288 WMQDKLKEVG 317
              D+  ++G
Sbjct: 201 HSWDEFLKLG 210


>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 709

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 650 RFLHTFENELQIDRQLS 600
           RF HT +N+LQ+DR +S
Sbjct: 471 RFYHTTDNQLQLDRDIS 487


>At4g12650.1 68417.m01990 endomembrane protein 70, putative TM4
           family;
          Length = 527

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = +3

Query: 180 VXXNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDKLKEVGATTEL 332
           V    D  K L  E V    V C VKY A+ +  +H M D +  V    EL
Sbjct: 68  VISEADKKKALGYEIVGFEVVPCSVKYDAEKMTKLH-MYDPVPSVNCPLEL 117


>At3g29375.1 68416.m03690 XH domain-containing protein contains Pfam
           profile: PF03469: XH domain
          Length = 335

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -2

Query: 427 TVFFFGSLPNTXXKTGGS*TSLPSIV*KPTSLNSVVAPTSFNL 299
           T   FGS P+    TG S +SLPS     T   S V  T  +L
Sbjct: 67  TSLLFGSSPSIFGATGSSPSSLPSSASTTTHATSSVTTTQPSL 109


>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 647

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -1

Query: 650 RFLHTFENELQIDRQLS 600
           RF H FEN+LQ+D++++
Sbjct: 429 RFYHIFENQLQMDQEIN 445


>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 647

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -1

Query: 650 RFLHTFENELQIDRQLS 600
           RF H FEN+LQ+D++++
Sbjct: 429 RFYHIFENQLQMDQEIN 445


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,307,829
Number of Sequences: 28952
Number of extensions: 288588
Number of successful extensions: 749
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)