Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_G21
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A) 169 8e-43
At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) simi... 169 1e-42
At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C) ribo... 168 2e-42
At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11, ... 35 0.031
At3g56410.2 68416.m06274 expressed protein 28 3.6
At3g56410.1 68416.m06273 expressed protein 28 3.6
At3g60410.2 68416.m06757 expressed protein 27 8.3
At3g60410.1 68416.m06756 expressed protein 27 8.3
>At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)
Length = 150
Score = 169 bits (412), Expect = 8e-43
Identities = 86/135 (63%), Positives = 96/135 (71%)
Frame = +3
Query: 42 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 221
M+ RK K K +V VTLGP GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTKEPKVDV-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 222 KVKADRDEASPYAAMLAAQDVXXKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 401
KVKADRDE+SPYAAMLAAQDV +CK LGITA+H+KLRA AQ
Sbjct: 60 KVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALA 119
Query: 402 XXXMXIGRIEDVTPV 446
M IGRIEDVTP+
Sbjct: 120 RSGMKIGRIEDVTPI 134
>At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) similar
to 40S ribosomal protein S14 GB:P19950 [Zea mays]
Length = 150
Score = 169 bits (411), Expect = 1e-42
Identities = 86/135 (63%), Positives = 95/135 (70%)
Frame = +3
Query: 42 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 221
M+ RK K K E VTLGP GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTKEPKVET-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 222 KVKADRDEASPYAAMLAAQDVXXKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 401
KVKADRDE+SPYAAMLAAQDV +CK LGITA+H+KLRA AQ
Sbjct: 60 KVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALA 119
Query: 402 XXXMXIGRIEDVTPV 446
M IGRIEDVTP+
Sbjct: 120 RSGMKIGRIEDVTPI 134
>At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C)
ribosomal protein S14 -Zea mays,PIR2:A30097
Length = 150
Score = 168 bits (409), Expect = 2e-42
Identities = 85/135 (62%), Positives = 95/135 (70%)
Frame = +3
Query: 42 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 221
M+ RK K K E VTLGP GE VFGV H+FASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTKEPKVE-NVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 222 KVKADRDEASPYAAMLAAQDVXXKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 401
KVKADRDE+SPYAAMLAAQDV +CK LGITA+H+KLRA AQ
Sbjct: 60 KVKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALA 119
Query: 402 XXXMXIGRIEDVTPV 446
M IGRIEDVTP+
Sbjct: 120 RSGMKIGRIEDVTPI 134
>At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11,
putative contains Pfam profile: PF00411: Ribosomal
protein S11
Length = 314
Score = 35.1 bits (77), Expect = 0.031
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +3
Query: 114 ETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVXXK 293
ET + HI N+TFV VTD G +G + + + Y A A+++ +
Sbjct: 190 ETNADIIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRR 249
Query: 294 CKTLGITALHIKL 332
K +G+ ++ +K+
Sbjct: 250 AKAMGLKSVVVKV 262
>At3g56410.2 68416.m06274 expressed protein
Length = 1535
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 263 YVGGTGCXXEMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEXW 421
Y G+ C E +NSW + A + N +P+ W S + +YE W
Sbjct: 1040 YPEGSRC--ESENSWAETMGDGAGLKLEEYNSNPFEWTSEKAAAFHLHEYERW 1090
>At3g56410.1 68416.m06273 expressed protein
Length = 1488
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 263 YVGGTGCXXEMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEXW 421
Y G+ C E +NSW + A + N +P+ W S + +YE W
Sbjct: 993 YPEGSRC--ESENSWAETMGDGAGLKLEEYNSNPFEWTSEKAAAFHLHEYERW 1043
>At3g60410.2 68416.m06757 expressed protein
Length = 324
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 497 YSXRPLRPPFVRVESDGNGGDIFNAANXHT*TSKS 393
++ RP RPP + S G+GG + + N +KS
Sbjct: 200 WNLRPRRPPPTKKRSIGHGGGVLKSCNGALPENKS 234
>At3g60410.1 68416.m06756 expressed protein
Length = 324
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 497 YSXRPLRPPFVRVESDGNGGDIFNAANXHT*TSKS 393
++ RP RPP + S G+GG + + N +KS
Sbjct: 200 WNLRPRRPPPTKKRSIGHGGGVLKSCNGALPENKS 234
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,411,278
Number of Sequences: 28952
Number of extensions: 233117
Number of successful extensions: 539
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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