Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_G16
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.19
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 29 0.59
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 28 1.0
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 27 2.4
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c... 27 3.1
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 5.5
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 5.5
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 5.5
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 5.5
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 5.5
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 5.5
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 5.5
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 5.5
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 5.5
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 5.5
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 5.5
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual 25 7.2
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 25 7.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 9.5
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 25 9.5
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 30.7 bits (66), Expect = 0.19
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -1
Query: 504 TSCTIYGSRRLTYHQGTRSCLVSEQVSALKVADVLPSNARCGTPLSS 364
TS T S LT T S VS + + VLP+++ TPLSS
Sbjct: 381 TSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSS 427
Score = 30.7 bits (66), Expect = 0.19
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -1
Query: 504 TSCTIYGSRRLTYHQGTRSCLVSEQVSALKVADVLPSNARCGTPLSS 364
TS T S LT T S VS + + VLP+++ TPLSS
Sbjct: 495 TSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSS 541
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 29.1 bits (62), Expect = 0.59
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2
Query: 182 RGNGPALPGSYKLP 141
RG GPALPGSY +P
Sbjct: 162 RGYGPALPGSYTIP 175
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/58 (25%), Positives = 21/58 (36%)
Frame = -1
Query: 534 PQQGFPKSKRTSCTIYGSRRLTYHQGTRSCLVSEQVSALKVADVLPSNARCGTPLSSV 361
P+ +P SC YG Y + T CL +S + G+P S V
Sbjct: 133 PRGNYPSEAEKSCDFYGQPLHFYRENTSPCLYGSSLSNVFTEKSSDYRHGLGSPTSLV 190
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 319 RSKRGSREGTNANFNGRQWSTTACVGRQHIGYLQ 420
R++ ++EG N N GR+ +T C +G+++
Sbjct: 924 RARHAAKEGINLNGEGRKPTTRKCSNCGQVGHMK 957
>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -2
Query: 341 SRLPRLERKTVFPQESTFHLS 279
S + ++ + VFP+ESTFHLS
Sbjct: 134 SEVGQILQVPVFPEESTFHLS 154
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 636 PSSIKPVKRLQTGFVXKSGLLLPT 565
P + VKR +TGF+ KS L P+
Sbjct: 1194 PGDLVMVKRTKTGFLHKSNKLAPS 1217
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 636 PSSIKPVKRLQTGFVXKSGLLLPT 565
P + VKR +TGF+ KS L P+
Sbjct: 1194 PGDLVMVKRTKTGFLHKSNKLAPS 1217
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 636 PSSIKPVKRLQTGFVXKSGLLLPT 565
P + VKR +TGF+ KS L P+
Sbjct: 1194 PGDLVMVKRTKTGFLHKSNKLAPS 1217
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 636 PSSIKPVKRLQTGFVXKSGLLLPT 565
P + VKR +TGF+ KS L P+
Sbjct: 1194 PGDLVMVKRTKTGFLHKSNKLAPS 1217
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 636 PSSIKPVKRLQTGFVXKSGLLLPT 565
P + VKR +TGF+ KS L P+
Sbjct: 1194 PGDLVMVKRTKTGFLHKSNKLAPS 1217
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 636 PSSIKPVKRLQTGFVXKSGLLLPT 565
P + VKR +TGF+ KS L P+
Sbjct: 1194 PGDLVMVKRTKTGFLHKSNKLAPS 1217
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 636 PSSIKPVKRLQTGFVXKSGLLLPT 565
P + VKR +TGF+ KS L P+
Sbjct: 1194 PGDLVMVKRTKTGFLHKSNKLAPS 1217
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 636 PSSIKPVKRLQTGFVXKSGLLLPT 565
P + VKR +TGF+ KS L P+
Sbjct: 1194 PGDLVMVKRTKTGFLHKSNKLAPS 1217
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 636 PSSIKPVKRLQTGFVXKSGLLLPT 565
P + VKR +TGF+ KS L P+
Sbjct: 1194 PGDLVMVKRTKTGFLHKSNKLAPS 1217
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 636 PSSIKPVKRLQTGFVXKSGLLLPT 565
P + VKR +TGF+ KS L P+
Sbjct: 1194 PGDLVMVKRTKTGFLHKSNKLAPS 1217
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 636 PSSIKPVKRLQTGFVXKSGLLLPT 565
P + VKR +TGF+ KS L P+
Sbjct: 1194 PGDLVMVKRTKTGFLHKSNKLAPS 1217
>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 339 PAATFRTQNGIPSGIHVPSXVH 274
P ++ TQ G+P G+H VH
Sbjct: 124 PVGSYETQLGLPVGLHPKLHVH 145
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 321 TQNGIPSGIHVPSXVHTLLEGPSSSKPRSHSYQ 223
T G+P GI S + + LE PSS+ S Q
Sbjct: 108 TATGVPDGILRDSPIVSALEPPSSNSSSSPQLQ 140
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/47 (19%), Positives = 23/47 (48%)
Frame = -3
Query: 286 IXRTHPPRGTEQFEASITFVPGRGAFCQAVVGERHVAMGRRSREVTS 146
I +HP T+ +++++PG + V + + G ++ ++ S
Sbjct: 2227 ILSSHPEWDTKAVTLTVSYIPGSISLAAYTVSKEGIEWGSKNMDINS 2273
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 288 PSXVHTLLEGPSSSKPRSHSYQAEVPSV 205
P + LL PSSS PRS + E PS+
Sbjct: 166 PRGLVPLLPPPSSSIPRSKAVTIEDPSI 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,266
Number of Sequences: 5004
Number of extensions: 59817
Number of successful extensions: 176
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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