Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_G16
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0529 - 11208973-11211143,11211703-11211772,11211993-112120... 32 0.35
02_02_0535 - 11292509-11294679,11294971-11295040,11295268-112953... 29 2.4
11_04_0266 - 15545781-15546266,15546620-15546814 29 4.3
06_02_0314 - 14190245-14191006 29 4.3
06_01_0910 - 7016932-7017759,7018059-7018351,7018952-7019390 29 4.3
05_03_0349 - 12799736-12799954,12803466-12803595,12804124-12804896 28 5.6
01_03_0147 - 13125065-13126679,13126802-13127664 28 5.6
07_01_0624 + 4651995-4654715 27 9.9
05_03_0277 - 11509279-11510118,11514100-11514558 27 9.9
03_06_0426 + 33855701-33856135 27 9.9
03_02_0652 - 10188076-10188243,10188353-10188541,10188633-101887... 27 9.9
03_01_0122 + 954356-954491,954877-955030,955141-955231,955732-95... 27 9.9
01_01_0633 - 4767914-4768020,4768057-4768085,4768590-4768745,476... 27 9.9
01_01_0471 - 3467275-3467351,3467526-3467895,3468258-3468555,346... 27 9.9
>02_02_0529 -
11208973-11211143,11211703-11211772,11211993-11212049,
11212769-11212819,11213112-11213264,11216095-11216255,
11216609-11216642
Length = 898
Score = 32.3 bits (70), Expect = 0.35
Identities = 31/115 (26%), Positives = 44/115 (38%)
Frame = -3
Query: 526 RLPEVQTNELHHIRLEEVNVPPGHTLLFSQRASLSAEGSRCAAVQRTLWYSTVFR*NLHW 347
++P NELHH + +PPG L A L + G +Q+ S R N
Sbjct: 302 QMPVSAQNELHHPQFPRGGMPPGP--LGRSMAHLDSAGLSTNNLQQNALNSGPVRPNGAM 359
Query: 346 CLPGCHV*NAKRYSLRNPRSIXRTHPPRGTEQFEASITFVPGRGAFCQAVVGERH 182
PG N +R + P + HP G + S P F ++G RH
Sbjct: 360 LTPGLVQHNLQRPNGLVPPQMLSRHPQHGMAPIQHS---PPQFSQFHAQMLGPRH 411
>02_02_0535 -
11292509-11294679,11294971-11295040,11295268-11295324,
11298629-11298789,11299123-11299156
Length = 830
Score = 29.5 bits (63), Expect = 2.4
Identities = 30/115 (26%), Positives = 43/115 (37%)
Frame = -3
Query: 526 RLPEVQTNELHHIRLEEVNVPPGHTLLFSQRASLSAEGSRCAAVQRTLWYSTVFR*NLHW 347
++P NELHH + +PPG L A L + G +Q+ S R N
Sbjct: 234 QMPVSAQNELHHPQFPRGGMPPGP--LGRNMAHLDSAGLSTNNLQQNALNSGPIRPNGAM 291
Query: 346 CLPGCHV*NAKRYSLRNPRSIXRTHPPRGTEQFEASITFVPGRGAFCQAVVGERH 182
PG N +R + P + P G + S P F ++G RH
Sbjct: 292 LTPGLVQHNLQRPNGLVPPQMLSRRPQHGMAPIQHS---PPQFSQFHAQMLGPRH 343
>11_04_0266 - 15545781-15546266,15546620-15546814
Length = 226
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 275 CTXDGTWIPEGIPFCVLNVAAGKAPMQISTEDSGVPQRALDGSTSA 412
C DG IP G V A G+ P + VP+R +D +SA
Sbjct: 148 CNIDGYMIPSGTRVLVNVWAIGRDPRFWEDVEEFVPERFIDSMSSA 193
>06_02_0314 - 14190245-14191006
Length = 253
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/59 (27%), Positives = 23/59 (38%)
Frame = -3
Query: 559 DNDSGFVRSTTRLPEVQTNELHHIRLEEVNVPPGHTLLFSQRASLSAEGSRCAAVQRTL 383
D D G TTRL T ++P G L+F + + G +C V R +
Sbjct: 65 DGDGGSDDETTRLERTITRAFRSTAELAKHLPTGAVLVFEVLSPVFTNGGKCQDVNRVM 123
>06_01_0910 - 7016932-7017759,7018059-7018351,7018952-7019390
Length = 519
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 427 LSAEGSRCAAVQRTLWYSTVFR*NLHWCLPG 335
L A+G AA+ + W + LHWC+PG
Sbjct: 461 LRADGHPGAAIDKR-WQKNIVSDCLHWCMPG 490
>05_03_0349 - 12799736-12799954,12803466-12803595,12804124-12804896
Length = 373
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -3
Query: 577 VITDAHDNDSGFVRSTTRLPEVQTNELHHIRLEEVNVPPGHTLLFSQRASLSAEGSR 407
V+ D D+ + T R VQ L + ++ + P H L+ S R ++ G+R
Sbjct: 81 VVNDTGDDAARPAPGTLRYGLVQDEPLWIVFAGDMTISPAHELVVSSRKTVDGRGAR 137
>01_03_0147 - 13125065-13126679,13126802-13127664
Length = 825
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -1
Query: 435 EQVSALKVADVLPSNARCGTPLSSVEICIGAFPAATFRTQNGIPSGIHVPSXVHTLLE 262
+++ L + LPS A + L VE+ + NG+ H+PS H L+E
Sbjct: 730 KRLKQLSIQGSLPSVAFVNSSLRKVEVLELKYEKGISDGSNGVSGIEHLPSLKHVLIE 787
>07_01_0624 + 4651995-4654715
Length = 906
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -1
Query: 636 PSSIKPVKRLQTGFVXKSGLLLPTRTTMTAGL 541
PSSI + LQT ++ S L LP+ TTM L
Sbjct: 622 PSSIGKLSNLQTLYLNGSVLELPSETTMLTKL 653
>05_03_0277 - 11509279-11510118,11514100-11514558
Length = 432
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 242 GFELLGPSRRVCTXDGTWIPEGIPFCVLNVAAG-KAPMQISTED 370
G L G + CT +G W E C L+ G + P+ IS E+
Sbjct: 91 GSLLAGDACVACTGEGAWFVEAAADCSLDDVNGLEYPLMISEEE 134
>03_06_0426 + 33855701-33856135
Length = 144
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -2
Query: 263 RDRAVRSLDHIRTRQRCLLSGCRWRTSRGNGPALPGSYKLPIHSLAAR 120
R R+ R +RTR + RWR GP + + P H L AR
Sbjct: 4 RLRSARRESTLRTRNSWRSTSPRWRLLALQGPVVLSRAEPPTHGLFAR 51
>03_02_0652 -
10188076-10188243,10188353-10188541,10188633-10188750,
10188841-10189491,10189870-10190033,10190137-10190574
Length = 575
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 134 YVSAACNFPGAPAHCHVTFSND 199
Y+S +CN PG P H TFS D
Sbjct: 174 YLSISCNLPGLP---HPTFSRD 192
>03_01_0122 +
954356-954491,954877-955030,955141-955231,955732-955806,
955884-955972,956084-956202,956338-956478,956817-956893,
958615-959217
Length = 494
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 163 SAGPLPRDVLQRQPDRRHLCLVRM*SRLRTARSL*EGVYXRW 288
SA P R V +R+P RR C SRL +L E +W
Sbjct: 16 SAAPRLRHVARRRPSRRSACPRSAASRLSIMAALGEDPIRQW 57
>01_01_0633 -
4767914-4768020,4768057-4768085,4768590-4768745,
4768835-4768983,4769106-4769638,4769900-4770068,
4770255-4770347,4770641-4770698,4771392-4771471,
4771548-4771715,4772090-4772242,4772756-4772884,
4772996-4773085,4773990-4774129,4774683-4774814,
4774916-4775087
Length = 785
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 164 APAHCHVTFSNDSLTEGTSAWYECDRGFELLGP 262
AP H + DS E W++CD G EL+ P
Sbjct: 634 APEHSWIHVFVDSKIEHYQ-WFQCDSGIELMVP 665
>01_01_0471 -
3467275-3467351,3467526-3467895,3468258-3468555,
3468680-3469734,3469823-3470467
Length = 814
Score = 27.5 bits (58), Expect = 9.9
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Frame = +2
Query: 134 YVSAACNFPGAPAHCHVTFSN--DSLTEGTSAW--YECDRGFEL-LGPSRRVCTXDG-TW 295
+V C APA C+ F+N D LT+ W Y +R EL L P +CT D W
Sbjct: 468 WVVGVCARRAAPARCYEHFTNEFDLLTDDQVVWCPYREERMKELQLAP---ICTQDSHLW 524
Query: 296 I 298
+
Sbjct: 525 L 525
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,488,182
Number of Sequences: 37544
Number of extensions: 469356
Number of successful extensions: 1359
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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