Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_G16
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.84 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.9  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 13/58 (22%), Positives = 25/58 (43%)
 Frame = +2

Query: 290 TWIPEGIPFCVLNVAAGKAPMQISTEDSGVPQRALDGSTSATFSAETCSLTKQERVPW 463
           TW P  +   +  + +G+  +Q ++ + G+P   L G        E   L++    PW
Sbjct: 519 TWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRC----KREGIELSRSNPTPW 572


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 272 VCTXDGTWIPEGIPFCVLNVAA 337
           VC  D TW P  I  C +++A+
Sbjct: 158 VCEYDHTWWPYDILNCTIHIAS 179


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 365 EDSGVPQRALDGSTSATFSAETCSLTKQERVPWWYVNLLEPYMV 496
           E+SGV   A D STS    A+ C  T + R  W+     EP +V
Sbjct: 242 ENSGVVHVAQDESTSLVCVAQACP-TPEYR--WYAQTGSEPMLV 282


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 365 EDSGVPQRALDGSTSATFSAETCSLTKQERVPWWYVNLLEPYMV 496
           E+SGV   A D STS    A+ C  T + R  W+     EP +V
Sbjct: 242 ENSGVVHVAQDESTSLVCVAQACP-TPEYR--WYAQTGSEPMLV 282


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/42 (28%), Positives = 16/42 (38%)
 Frame = +3

Query: 456 CPGGTLTSSSRIWCNSFVWTSGSLVVERTNPLSLSCASVITD 581
           CP G    + R W  + V  SG  V E    + +    V  D
Sbjct: 761 CPAGCKCYNDRTWNTNAVDCSGLGVEEIPRRIPMDATEVYLD 802


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,715
Number of Sequences: 438
Number of extensions: 4300
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)