Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_G16
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g31955.1 68416.m04047 hypothetical protein                          31   0.51 
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family...    28   6.2  
At4g19510.2 68417.m02870 disease resistance protein (TIR-NBS-LRR...    27   8.2  
At4g19510.1 68417.m02869 disease resistance protein (TIR-NBS-LRR...    27   8.2  
At4g02830.1 68417.m00383 expressed protein temporary automated f...    27   8.2  

>At3g31955.1 68416.m04047 hypothetical protein
          Length = 111

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
 Frame = +2

Query: 278 TXDGTWIPEGIPFCVLNVAAGKAPMQISTEDSGVPQRALDGSTSATFSAETCSLTKQERV 457
           T DGT  P+GIP  +L +   +A  +I  + +   +R    S  A   AET  +T +++ 
Sbjct: 14  THDGTSPPKGIPEAIL-MDLAEAQRKIEEQTAYNEKR---DSEIAAREAETAQITTEQKD 69

Query: 458 PWWYVNLLEPYMVQ--LVRLDF 517
              +++L+E Y+ Q  L  LDF
Sbjct: 70  KLEHLSLVEKYLRQTDLQFLDF 91


>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 1696

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +1

Query: 319 RSKRGSREGTNANFNGRQWSTTACVGRQHIGYLQR 423
           R    SR+  + N NG+++++ +  G++H+G+  R
Sbjct: 334 RENEWSRQHNHHNGNGKRFNSNSYRGKEHLGHSDR 368


>At4g19510.2 68417.m02870 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1049

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +3

Query: 492  WCNSFVWTSGSLVVERTNPLSLSCASVITDPIXERIRSATV 614
            WCN F W+  +    R +P S S    +TD    ++    +
Sbjct: 937  WCNIFKWSEETNEGNRCHPTSASFEFYLTDETERKLECCEI 977


>At4g19510.1 68417.m02869 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1049

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +3

Query: 492  WCNSFVWTSGSLVVERTNPLSLSCASVITDPIXERIRSATV 614
            WCN F W+  +    R +P S S    +TD    ++    +
Sbjct: 937  WCNIFKWSEETNEGNRCHPTSASFEFYLTDETERKLECCEI 977


>At4g02830.1 68417.m00383 expressed protein temporary automated
           functional assignment
          Length = 184

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 579 LLLPTRTTMTAGLFVP-QQGFPKSKRTSCT 493
           L+ P RTT   G+F+P     P +K+T+C+
Sbjct: 88  LVTPGRTTSGTGVFLPATASHPPTKKTACS 117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,586,587
Number of Sequences: 28952
Number of extensions: 341451
Number of successful extensions: 972
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)