Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_G15
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   3.1  
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces...    26   4.1  
SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces pomb...    26   5.5  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    26   5.5  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   7.2  
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.2  

>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 455 YFYIWXYIVSLTWNYPFWSVN 393
           YFY +  +V +T  YP W+ N
Sbjct: 10  YFYFFPLLVFITLQYPRWTFN 30


>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/67 (22%), Positives = 31/67 (46%)
 Frame = -1

Query: 305 NLSVLICGLTLNALEISXYACVYSFFFDRTTHPNCLKIVFSHDIYFSRGAFSLSCN*AIG 126
           ++  ++CG+ ++   +  Y   + +  D    PNC  ++ + D  F      L  + AI 
Sbjct: 150 SVGAVLCGMDMHVTYLK-YCMAFQYLQD----PNCAFLLTNQDSTFPTNGKFLPGSGAIS 204

Query: 125 YPIRYLT 105
           YP+ + T
Sbjct: 205 YPLIFST 211


>SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 316

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 408 GIVPGQTHNVXP 443
           GI+PG THNV P
Sbjct: 281 GIIPGATHNVGP 292


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = +3

Query: 360 MNRNLGDDQVHVHAPKGIVPGQTHNVXPNIKVRNQKDHAPGVDQVHLTXNL*AH 521
           +NR+L  ++ H+H P+   P Q  N+ P  + +     +     +H + N   H
Sbjct: 30  VNRHLRSNRYHIHVPRP-NPNQIINLYPPYEYKYNNTSSLCTKYIHTSANKARH 82


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +3

Query: 231 KRVNTSVXRDLESVQSQATNQNTQVHAQSTNEEVILEVYLXTDMNRNLGDDQVHVHA 401
           K   T++   + S+     ++  +   QSTNE++I E++     N N     V + A
Sbjct: 138 KYSKTNLSYGVRSIALDGLSKCIETSIQSTNEDLIKEIWKCIKSNLNTSSTNVLLSA 194


>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 183 RENYLQAVRMRRTIEEKRVNTSVXRDLESVQSQATNQNTQV 305
           R N +  +  + TIE  +  T V ++ +++   A NQN Q+
Sbjct: 54  RSNKISPITSQLTIEPNKSQTIVKKNPDNLIFVAVNQNVQL 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,958,408
Number of Sequences: 5004
Number of extensions: 33830
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)