Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_G15
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0234 - 32535281-32535919,32536121-32536860,32536911-32536953     29   4.3  
11_02_0066 - 7954491-7954664,7955171-7955382,7956422-7956467           27   9.9  
02_05_1335 - 35770403-35770543,35770630-35770755,35770859-357709...    27   9.9  

>03_06_0234 - 32535281-32535919,32536121-32536860,32536911-32536953
          Length = 473

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +3

Query: 330 VILEVYLXTDMNRNLGDDQVH-VHAPKGIVP---GQTHNVXPNIKVRNQKDHAPGVDQV 494
           +++   +  D    LGD+  + +  P+ +VP   G+  N  P+ +V   KD  PG D+V
Sbjct: 101 ILVLAIVKDDPAEELGDENANPLPGPEKVVPDPNGELPNKDPDEEVVTPKDTVPGPDEV 159


>11_02_0066 - 7954491-7954664,7955171-7955382,7956422-7956467
          Length = 143

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 1   RVCHHVAIRIKQLINEVTLKH*VSGG 78
           R C+   +++K +I +V L+H V+GG
Sbjct: 103 RYCYEAGLQVKVVIPQVDLQHVVNGG 128


>02_05_1335 -
           35770403-35770543,35770630-35770755,35770859-35770942,
           35771444-35771656,35771759-35771977
          Length = 260

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 153 KCPARKVNIVR-ENYLQAVRMRRTIEEKRVNTSVXRDLESVQSQATNQNT 299
           +  AR++  ++ E+ + A  +RR IEEK    S   DL S  ++   + T
Sbjct: 63  RAAARRIEQLKAESTMNAAGLRRCIEEKETMVSAYNDLSSHSTKLERECT 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,746,454
Number of Sequences: 37544
Number of extensions: 186540
Number of successful extensions: 465
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)