Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_G15
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   31   0.62 
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     30   1.4  
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)                      30   1.9  
SB_4548| Best HMM Match : WD40 (HMM E-Value=6.7e-35)                   30   1.9  
SB_40203| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_10241| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_40741| Best HMM Match : UreF (HMM E-Value=0.65)                     29   3.3  
SB_11732| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_10565| Best HMM Match : DUF1279 (HMM E-Value=1.3)                   29   3.3  

>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +3

Query: 141  TRQGKCPARKVNIVRENYLQAVRMRRTIEEKRVNTSVXRDLE 266
            T   KCP R VNIV +   + VR RRT  ++ V+ S    +E
Sbjct: 1190 TSVNKCPFRDVNIVHKKENKPVRSRRTRGQQGVDKSRYTSME 1231


>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 4303

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = +3

Query: 261 LESVQSQATNQNTQVHAQSTNEEVILE-VYLXTDMNRNLGDDQVHVHAPKG--IVPGQTH 431
           L  V++    +N   + Q+  +E++L+   + ++M + + +D      P+G  ++PG   
Sbjct: 334 LRDVKAYRNTENCVENPQAPGDEIMLDFAAVISEMLQKVENDDSSDSDPEGCLVLPGNEM 393

Query: 432 NVXPNIKVRNQKDHA 476
            V PNI+V N    A
Sbjct: 394 AVNPNIQVINTTPRA 408


>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
          Length = 2276

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = +3

Query: 312  QSTNEEVILEVYLXTDMNRNLGDDQVHVHAPKGIVPGQTHNVXPNIKVRNQKDHAPGVDQ 491
            Q  N++  L   +    NR L   QV V AP G +P Q H   P+I  + Q    P   Q
Sbjct: 1590 QRFNQQQTLRRRMALMQNRGLPPPQVPVPAPTGGIPQQAH---PSIHPQMQTQQPPPYQQ 1646


>SB_4548| Best HMM Match : WD40 (HMM E-Value=6.7e-35)
          Length = 844

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +3

Query: 300 QVHAQSTNEEVILEVYLXTDMNRNLGDDQV---HVHAPKGIVPGQTHNVXP 443
           QVH + ++ +V+ +VYL   +NR +   +    H H   G+  G+ +++ P
Sbjct: 82  QVHCRHSSPQVLHQVYLPCQVNRRICQSKTRKYHNHDENGLSRGKQNSLSP 132


>SB_40203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 530 VFFVSL*IXCQMNLIDSWSVIFLISYFY-IWXYIVSLTWNYPFWSV 396
           ++ + L + C + L + W ++  + Y Y IW  +  + + Y  W V
Sbjct: 252 LYEIRLVLACMLYLYEIWLILACMLYLYEIWLILACMQYLYEIWLV 297


>SB_10241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 530 VFFVSL*IXCQMNLIDSWSVIFLISYFY-IWXYIVSLTWNYPFWSV 396
           ++ + L + C + L + W ++  + Y Y IW  +  + + Y  W V
Sbjct: 43  LYEIRLVLACMLYLYEIWLILACMLYLYEIWLILACMQYLYEIWLV 88


>SB_40741| Best HMM Match : UreF (HMM E-Value=0.65)
          Length = 266

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +3

Query: 195 LQAVRMRRTIEEKRVNTSVXRDLESVQSQATNQNTQVHAQSTNEEVILEVYLXTDMNRNL 374
           + AV    T   + +   V  D E++    T+++ +  A+  NEE + E+Y     NR L
Sbjct: 96  IDAVIQENTERVQELKGVVTTDRETIDDPNTSESRRQEAREGNEERLSEIYELERENREL 155


>SB_11732| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = +3

Query: 174 NIVRENYLQAVRMRRTIEEKRVNTSVXRDLESVQSQATNQNTQVHAQSTNEEVILEVYLX 353
           +IVR   L    + R + EKR      R      S  T  N++V + ST EE + E    
Sbjct: 383 SIVRSVALSFKMIGRMLREKREKQRQARSTSVSSSDRTRTNSEV-STSTIEEALRETRRR 441

Query: 354 TDMNRNLGD 380
             + R+ GD
Sbjct: 442 QSLLRHTGD 450


>SB_10565| Best HMM Match : DUF1279 (HMM E-Value=1.3)
          Length = 177

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +3

Query: 195 LQAVRMRRTIEEKRVNTSVXRDLESVQSQATNQNTQVHAQSTNEEVILEVYLXTDMNRNL 374
           + AV    T   + +   V  D E++    T+++ +  A+  NEE + E+Y     NR L
Sbjct: 7   IDAVIQENTERVQELKGVVTTDRETIDDPNTSESRRQEAREGNEERLSEIYELERENREL 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,350,126
Number of Sequences: 59808
Number of extensions: 240964
Number of successful extensions: 620
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)