Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_G15
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12080.2 68414.m01397 expressed protein                             31   0.67 
At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N domain-...    28   6.2  

>At1g12080.2 68414.m01397 expressed protein
          Length = 138

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 216 RTIEEKRVNTSVXRDLESVQSQATNQNTQVHAQSTNEEVILE 341
           +T+EE  V T V +  E      T Q ++     TNEEV++E
Sbjct: 22  KTVEETVVETEVTQQPEESVPAVTEQKSEAPIVETNEEVVVE 63


>At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N
           domain-containing protein-related contains weak hit to
           Pfam F00627: UBA/TS-N domain; supported by tandem
           duplication of ubiquitin-associated (UBA)/TS-N domain
           protein (GI:2924790) (TIGR_Ath1:At2g33010) [Arabidopsis
           thaliana]
          Length = 508

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 616 ICGDLG*CEACSICSFDGLFHFCF 545
           IC +LG CE  ++C  DG FH+ F
Sbjct: 27  ICAELGVCEEEALCYLDG-FHWDF 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,909,727
Number of Sequences: 28952
Number of extensions: 165547
Number of successful extensions: 439
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)