Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_G14
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22160| Best HMM Match : Arc (HMM E-Value=7.5)                       29   4.2  
SB_46261| Best HMM Match : Integrase_Zn (HMM E-Value=5.9)              28   5.6  
SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)                28   5.6  
SB_51745| Best HMM Match : DPRP (HMM E-Value=0.33)                     28   7.4  
SB_41090| Best HMM Match : Integrase_Zn (HMM E-Value=8.1)              28   7.4  
SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_24095| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_59287| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_23840| Best HMM Match : Casein (HMM E-Value=2.8)                    27   9.7  

>SB_22160| Best HMM Match : Arc (HMM E-Value=7.5)
          Length = 246

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +1

Query: 55  VVLCVGSEAKTFTRCGLVHELRKHGFEXNLMRNWVCLVEHESSRDTSKTNTNRNGSKDYG 234
           VV   G  + + +   +   L++ GF  +L  + V  +   +S    K    RNG K   
Sbjct: 41  VVKVTGGRSNSSSHEDVAQSLKRSGFLYDLTESSV--IPTATSATYRKFRLKRNGMKKTE 98

Query: 235 LFQINDRYWCS 267
            F+   R WCS
Sbjct: 99  FFKYLRRKWCS 109


>SB_46261| Best HMM Match : Integrase_Zn (HMM E-Value=5.9)
          Length = 168

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = +1

Query: 211 RNGSKDYGLFQINDRYWCSKGASPXKDCNVKC 306
           R+   ++ +  + +R+W  +G +  K+C +KC
Sbjct: 46  RHVGVEHVINHLRERFWILRGRTEVKECTIKC 77


>SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)
          Length = 1281

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -1

Query: 417 RALAVVLPTVPGIEAVTFVNFLSAFRCXSDVVSQEVGALNV---AVFAWTGAFAAPVPVV 247
           RAL V+   + G +A+T  NF+S   C       +   LN+   AV   TG  A PV  V
Sbjct: 285 RALMVLHSRITGEDALTLTNFISFKACCHAHSGDDEVILNLHFGAVTMETGILAIPVTPV 344

Query: 246 DL 241
            +
Sbjct: 345 PI 346


>SB_51745| Best HMM Match : DPRP (HMM E-Value=0.33)
          Length = 352

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 244 INDRYWCSKGASPXKDCNVKC 306
           + +R+W  +G +  K+C +KC
Sbjct: 278 LRERFWILRGRAEVKECTIKC 298


>SB_41090| Best HMM Match : Integrase_Zn (HMM E-Value=8.1)
          Length = 166

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 244 INDRYWCSKGASPXKDCNVKC 306
           + +R+W  +G +  K+C +KC
Sbjct: 57  LRERFWILRGRAEVKECTIKC 77


>SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1497

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 244  INDRYWCSKGASPXKDCNVKC 306
            + +R+W  +G +  K+C +KC
Sbjct: 1202 LRERFWILRGRAEVKECTIKC 1222


>SB_24095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1162

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 244  INDRYWCSKGASPXKDCNVKC 306
            + +R+W  +G +  K+C +KC
Sbjct: 959  LRERFWILRGRAEVKECTIKC 979


>SB_59287| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 438 AAANIRQRALAVVLPTVPGIEAVTFVNFLSAFRCXSDV-VSQEVGALN 298
           A  N+++RAL +  P +  +  ++ V+ LS     SDV V  +V  L+
Sbjct: 90  ALENVQRRALKIAFPVLSDVSVLSDVSVLSDVSVLSDVSVLSDVSVLS 137


>SB_23840| Best HMM Match : Casein (HMM E-Value=2.8)
          Length = 501

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +1

Query: 166 VEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGASPXKDCNVKCSDLLTDDI 330
           V H+ S++ S+TN  RNG        +  +    K +   +DC V   DL T ++
Sbjct: 342 VTHKPSKERSRTNRARNGHAQTERETVTHKP-SEKRSRTNRDCGVGRDDLTTIEL 395


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,603,144
Number of Sequences: 59808
Number of extensions: 308498
Number of successful extensions: 614
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)