Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_G11
         (464 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.     85   2e-18
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   6.9  
AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein ...    22   9.2  

>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score = 84.6 bits (200), Expect = 2e-18
 Identities = 37/81 (45%), Positives = 54/81 (66%)
 Frame = +3

Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
           M I VKTLTGK I +++EP+D +E +K ++ +KEGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
           +Q   +       +G   I++
Sbjct: 61  IQKESTLHLVLRLRGGMQIFV 81



 Score = 84.6 bits (200), Expect = 2e-18
 Identities = 37/81 (45%), Positives = 54/81 (66%)
 Frame = +3

Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
           M I VKTLTGK I +++EP+D +E +K ++ +KEGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
           +Q   +       +G   I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157



 Score = 84.2 bits (199), Expect = 2e-18
 Identities = 35/62 (56%), Positives = 48/62 (77%)
 Frame = +3

Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
           M I VKTLTGK I +++EP+D +E +K ++ +KEGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 318 VQ 323
           +Q
Sbjct: 213 IQ 214



 Score = 23.8 bits (49), Expect = 3.0
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 298 RQLKITKFRAGSVLHLVLALRGG 366
           R L     +  S LHLVL LRGG
Sbjct: 206 RTLSDYNIQKESTLHLVLRLRGG 228


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 10/54 (18%), Positives = 25/54 (46%)
 Frame = +3

Query: 147 KVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQ 308
           +++T   K++ I    TD++  ++ +    E    +Q+R +       DE+  +
Sbjct: 277 ELETSKAKQVAIGQRSTDEINSLEEKTERLEDTISKQKRELMDALAKADERKTE 330


>AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein
           protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 9.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 204 VERIKXRVXEKEGIPPQQQRLIFSG 278
           V + K R+ E EG+  Q   L+F G
Sbjct: 74  VRQFKDRIAEGEGLFYQYCNLVFGG 98


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 398,121
Number of Sequences: 2352
Number of extensions: 6067
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 40395045
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)