Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_G11
(464 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g31340.1 68414.m03835 ubiquitin family protein contains INTER... 103 4e-23
At2g35635.1 68415.m04370 ubiquitin family protein contains INTER... 103 6e-23
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 81 3e-16
At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to polyu... 80 8e-16
At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677 80 8e-16
At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to GI:92... 80 8e-16
At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to GI:92... 80 8e-16
At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3) senescence... 80 8e-16
At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3) senescence... 80 8e-16
At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3) senescence... 80 8e-16
At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3) senescence... 80 8e-16
At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3) senescence... 80 8e-16
At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to GI:3... 80 8e-16
At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to GI:1... 80 8e-16
At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to GI:1... 80 8e-16
At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to GI:1... 80 8e-16
At1g65350.1 68414.m07413 polyubiquitin, putative similar to poly... 80 8e-16
At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / ... 79 1e-15
At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / ... 79 1e-15
At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / ... 79 1e-15
At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / ... 79 1e-15
At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to poly... 79 1e-15
At1g23410.1 68414.m02932 ubiquitin extension protein, putative /... 79 1e-15
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu... 73 1e-13
At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam ... 72 2e-13
At1g53950.1 68414.m06145 ubiquitin family protein contains INTER... 52 3e-07
At5g38470.1 68418.m04650 DNA repair protein RAD23, putative simi... 48 2e-06
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ... 46 1e-05
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ... 46 1e-05
At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi... 46 2e-05
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi... 44 4e-05
At1g79650.3 68414.m09289 DNA repair protein RAD23, putative simi... 43 1e-04
At1g79650.2 68414.m09288 DNA repair protein RAD23, putative simi... 43 1e-04
At1g79650.1 68414.m09287 DNA repair protein RAD23, putative simi... 43 1e-04
At5g42220.1 68418.m05139 ubiquitin family protein contains INTER... 41 5e-04
At5g16090.1 68418.m01880 ubiquitin family protein contains INTER... 41 5e-04
At4g03350.1 68417.m00457 ubiquitin family protein contains INTER... 40 0.001
At4g02970.1 68417.m00404 ubiquitin family protein contains INTER... 39 0.002
At1g11970.1 68414.m01383 hypothetical protein 39 0.002
At1g64470.1 68414.m07309 ubiquitin family protein contains INTER... 36 0.013
At5g11080.1 68418.m01294 ubiquitin family protein contains INTER... 35 0.024
At5g40630.1 68418.m04932 ubiquitin family protein contains INTER... 33 0.072
At5g14360.1 68418.m01678 ubiquitin family protein contains INTER... 33 0.072
At4g03370.1 68417.m00459 ubiquitin family protein contains INTER... 31 0.29
At4g03360.1 68417.m00458 ubiquitin family protein contains INTER... 31 0.38
At4g02950.1 68417.m00402 ubiquitin family protein contains INTER... 31 0.38
At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N domain-... 31 0.38
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 30 0.89
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 29 1.2
At1g22850.1 68414.m02853 expressed protein 27 8.3
>At1g31340.1 68414.m03835 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 156
Score = 103 bits (248), Expect = 4e-23
Identities = 46/62 (74%), Positives = 56/62 (90%)
Frame = +3
Query: 141 LIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYKV 320
+IKVKTLTGKEIEIDIEPTD ++RIK RV EKEGIPP QQRLI++GKQ+ D+KTA+DY +
Sbjct: 78 MIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNI 137
Query: 321 QG 326
+G
Sbjct: 138 EG 139
Score = 81.0 bits (191), Expect = 4e-16
Identities = 36/79 (45%), Positives = 52/79 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 318 VQGRFSTSSCFGFKGRRMI 374
+Q + +G MI
Sbjct: 61 IQKESTLHLVLRLRGGTMI 79
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1
Query: 328 GSVLHLVLALRGG 366
GSVLHLVLALRGG
Sbjct: 140 GSVLHLVLALRGG 152
>At2g35635.1 68415.m04370 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 154
Score = 103 bits (247), Expect = 6e-23
Identities = 46/62 (74%), Positives = 56/62 (90%)
Frame = +3
Query: 141 LIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYKV 320
+IKVKTLTGKEIEIDIEPTD ++RIK RV EKEGIPP QQRLI++GKQ+ D+KTA+DY +
Sbjct: 78 MIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAI 137
Query: 321 QG 326
+G
Sbjct: 138 EG 139
Score = 81.0 bits (191), Expect = 4e-16
Identities = 36/79 (45%), Positives = 52/79 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 318 VQGRFSTSSCFGFKGRRMI 374
+Q + +G MI
Sbjct: 61 IQKESTLHLVLRLRGGTMI 79
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1
Query: 328 GSVLHLVLALRGG 366
GSVLHLVLALRGG
Sbjct: 140 GSVLHLVLALRGG 152
>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
from [Arabidopsis thaliana]
Length = 78
Score = 81.4 bits (192), Expect = 3e-16
Identities = 36/62 (58%), Positives = 50/62 (80%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M IKVKTLT K+I+I+IE TD +ERIK R+ EKEGIPP QR++++GKQ+ D+ TA+ Y
Sbjct: 1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYN 60
Query: 318 VQ 323
++
Sbjct: 61 LE 62
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1
Query: 328 GSVLHLVLALRGG 366
GSVLHLVLALRGG
Sbjct: 64 GSVLHLVLALRGG 76
>At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to
polyubiquitin (ubq9) gene sequence GI:304120 from
[Arabidopsis thaliana]
Length = 322
Score = 79.8 bits (188), Expect = 8e-16
Identities = 34/81 (41%), Positives = 54/81 (66%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEG+PP QQRLIF+GKQ++D +T DY
Sbjct: 79 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGVPPDQQRLIFAGKQLDDGRTLADYN 138
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 139 IQKESTLHLVLRLRGGMQIFV 159
Score = 73.7 bits (173), Expect = 5e-14
Identities = 31/62 (50%), Positives = 45/62 (72%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I V+TLT K I +++E +D + +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 155 MQIFVRTLTRKTIALEVESSDTTDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
Query: 318 VQ 323
+Q
Sbjct: 215 IQ 216
Score = 66.9 bits (156), Expect = 6e-12
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMND-EKTAQDY 314
M I V TLTGK I +++E +D ++ +K ++ +KE I P QQRLIF+G+Q+ D T DY
Sbjct: 231 MQIFVNTLTGKTITLEVESSDTIDNVKAKIQDKERIQPDQQRLIFAGEQLEDGYYTLADY 290
Query: 315 KVQGRFSTSSCFGFKGRRMIWLVIIFLCIY 404
+Q + +G + +FL +
Sbjct: 291 NIQKESTLHLVLRLRGGECFGFIFLFLLCF 320
Score = 65.7 bits (153), Expect = 1e-11
Identities = 30/62 (48%), Positives = 41/62 (66%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I KTLT K I ID+ +D + +K ++ + EGIP QQRLIFSGK ++D +T DY
Sbjct: 3 MQIHAKTLTEKTITIDVVSSDTINNVKAKIQDIEGIPLDQQRLIFSGKLLDDGRTLADYS 62
Query: 318 VQ 323
+Q
Sbjct: 63 IQ 64
>At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677
Length = 382
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 289 IQKESTLHLVLRLRGGMQIFV 309
Score = 79.4 bits (187), Expect = 1e-15
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
Query: 318 VQ 323
+Q
Sbjct: 365 IQ 366
>At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233
Score = 79.4 bits (187), Expect = 1e-15
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 318 VQ 323
+Q
Sbjct: 289 IQ 290
>At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233
Score = 79.4 bits (187), Expect = 1e-15
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 318 VQ 323
+Q
Sbjct: 289 IQ 290
>At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 312
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233
Score = 38.3 bits (85), Expect = 0.003
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKE 239
M I VKTLTGK I +++E +D ++ +K ++ +KE
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 262
>At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 289 IQKESTLHLVLRLRGGMQIFV 309
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 365 IQKESTLHLVLRLRGGMQIFV 385
Score = 38.3 bits (85), Expect = 0.003
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKE 239
M I VKTLTGK I +++E +D ++ +K ++ +KE
Sbjct: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 414
>At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 289 IQKESTLHLVLRLRGGMQIFV 309
Score = 38.3 bits (85), Expect = 0.003
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKE 239
M I VKTLTGK I +++E +D ++ +K ++ +KE
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 338
>At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 289 IQKESTLHLVLRLRGGMQIFV 309
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 365 IQKESTLHLVLRLRGGMQIFV 385
Score = 38.3 bits (85), Expect = 0.003
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKE 239
M I VKTLTGK I +++E +D ++ +K ++ +KE
Sbjct: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 414
>At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 289 IQKESTLHLVLRLRGGMQIFV 309
Score = 38.3 bits (85), Expect = 0.003
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKE 239
M I VKTLTGK I +++E +D ++ +K ++ +KE
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 338
>At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to
GI:304117
Length = 229
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 79.4 bits (187), Expect = 1e-15
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 318 VQ 323
+Q
Sbjct: 213 IQ 214
>At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233
Score = 79.4 bits (187), Expect = 1e-15
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 318 VQ 323
+Q
Sbjct: 289 IQ 290
>At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 229
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 79.4 bits (187), Expect = 1e-15
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 318 VQ 323
+Q
Sbjct: 213 IQ 214
>At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFV 233
Score = 79.4 bits (187), Expect = 1e-15
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 318 VQ 323
+Q
Sbjct: 289 IQ 290
>At1g65350.1 68414.m07413 polyubiquitin, putative similar to
polyubiquitin GI:248337 from [Zea mays]
Length = 294
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 61 IQKESTLHLVLRLRGGMQIFV 81
Score = 76.6 bits (180), Expect = 8e-15
Identities = 34/81 (41%), Positives = 52/81 (64%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KE IPP QQRLIF+GKQ+ D +T DY
Sbjct: 152 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEWIPPDQQRLIFAGKQLEDGRTLADYN 211
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 212 IQKESTLHLVLRLRGGMQIFV 232
Score = 73.3 bits (172), Expect = 7e-14
Identities = 31/58 (53%), Positives = 44/58 (75%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQD 311
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T D
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
Score = 64.5 bits (150), Expect = 3e-11
Identities = 27/50 (54%), Positives = 39/50 (78%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQM 287
M I VKTLTGK I +++E + ++ +K ++ +KEGIPP QQRLIF+GKQ+
Sbjct: 228 MQIFVKTLTGKTITLEVESSGTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 277
>At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / 40S
ribosomal protein S27A (RPS27aC) identical to GI:166933,
GI:166934
Length = 157
Score = 79.4 bits (187), Expect = 1e-15
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 318 VQ 323
+Q
Sbjct: 61 IQ 62
>At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / 60S
ribosomal protein L40 (RPL40B) identical to GI:166929,
GI:166930
Length = 128
Score = 79.4 bits (187), Expect = 1e-15
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 318 VQ 323
+Q
Sbjct: 61 IQ 62
>At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / 40S
ribosomal protein S27A (RPS27aB) identical to GI:166936
Length = 157
Score = 79.4 bits (187), Expect = 1e-15
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 318 VQ 323
+Q
Sbjct: 61 IQ 62
>At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / 60S
ribosomal protein L40 (RPL40A) identical to GI:166930,
GI:166931
Length = 128
Score = 79.4 bits (187), Expect = 1e-15
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 318 VQ 323
+Q
Sbjct: 61 IQ 62
>At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to
polyubiquitin (ubq12) gene sequence GI:304121 from
[Arabidopsis thaliana]
Length = 230
Score = 79.4 bits (187), Expect = 1e-15
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
+Q + +G I++
Sbjct: 137 IQKESTLHLVLRLRGGMQIFV 157
Score = 74.5 bits (175), Expect = 3e-14
Identities = 32/62 (51%), Positives = 45/62 (72%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGI P QQRLIF+GKQ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGISPDQQRLIFAGKQHEDGRTLADYN 212
Query: 318 VQ 323
+Q
Sbjct: 213 IQ 214
Score = 72.1 bits (169), Expect = 2e-13
Identities = 33/81 (40%), Positives = 51/81 (62%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I +KTLTGK +++E +D ++ +K ++ + EGIPP Q RLIF+GKQ+ D +T DY
Sbjct: 1 MQIFLKTLTGKTKVLEVESSDTIDNVKAKIQDIEGIPPDQHRLIFAGKQLEDGRTLADYN 60
Query: 318 VQGRFSTSSCFGFKGRRMIWL 380
VQ + F+G I++
Sbjct: 61 VQEDSTLHLLLRFRGGMQIFV 81
>At1g23410.1 68414.m02932 ubiquitin extension protein, putative /
40S ribosomal protein S27A (RPS27aA) strong similarity
to ubiquitin extension protein (UBQ5) GB:AAA32906
GI:166934 from (Arabidopsis thaliana)
Length = 156
Score = 79.4 bits (187), Expect = 1e-15
Identities = 33/62 (53%), Positives = 47/62 (75%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VKTLTGK I +++E +D ++ +K ++ +KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 318 VQ 323
+Q
Sbjct: 61 IQ 62
>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
thaliana] (Genetics 139 (2), 921-939 (1995))
Length = 631
Score = 72.5 bits (170), Expect = 1e-13
Identities = 30/62 (48%), Positives = 47/62 (75%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I V+TLTGK I ++++ +D ++ +K ++ +KEGI P+QQRLIF+GKQ+ D +T DY
Sbjct: 79 MQIFVQTLTGKTITLEVKSSDTIDNVKAKIQDKEGILPRQQRLIFAGKQLEDGRTLADYN 138
Query: 318 VQ 323
+Q
Sbjct: 139 IQ 140
Score = 68.9 bits (161), Expect = 2e-12
Identities = 32/79 (40%), Positives = 46/79 (58%)
Frame = +3
Query: 144 IKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYKVQ 323
I KTLT K I +D+E +D + +K ++ KEGIP QQRLIF+GKQ+ D T DY +Q
Sbjct: 5 IYAKTLTEKTITLDVETSDSIHNVKAKIQNKEGIPLDQQRLIFAGKQLEDGLTLADYNIQ 64
Query: 324 GRFSTSSCFGFKGRRMIWL 380
+ +G I++
Sbjct: 65 KESTLHLVLRLRGGMQIFV 83
Score = 62.9 bits (146), Expect = 1e-10
Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQ--QRLIFSGKQMNDEKTAQD 311
M I VKTLT K I +++E D +E +K V +KEGI PQ QRLIF GK++ D T D
Sbjct: 319 MQIFVKTLTRKRINLEVESWDTIENVKAMVQDKEGIQPQPNLQRLIFLGKELKDGCTLAD 378
Query: 312 YKVQ 323
Y +Q
Sbjct: 379 YSIQ 382
Score = 62.9 bits (146), Expect = 1e-10
Identities = 30/77 (38%), Positives = 45/77 (58%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I +KTLTGK I +++E +D + +K ++ KEGI P QQ LIF G+Q+ D T DY
Sbjct: 552 MQIFIKTLTGKTIILEVESSDTIANVKEKIQVKEGIKPDQQMLIFFGQQLEDGVTLGDYD 611
Query: 318 VQGRFSTSSCFGFKGRR 368
+ + + + RR
Sbjct: 612 IHKKSTLYLVLRLRQRR 628
Score = 52.8 bits (121), Expect = 1e-07
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I VK GK I +++ +D ++ +K ++ +K G PP QQ L+F G Q+ D +T DY
Sbjct: 393 MQIFVKLFGGKIITLEVLSSDTIKSVKAKIQDKVGSPPDQQILLFRGGQLQDGRTLGDYN 452
Query: 318 VQ 323
++
Sbjct: 453 IR 454
Score = 52.0 bits (119), Expect = 2e-07
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +3
Query: 153 KTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQM--NDEKTAQDYKVQG 326
K T + + +E +D +E +K ++ ++EG+ P QRLIF G+++ D +T DY ++
Sbjct: 165 KNFTSDTLTLKVESSDTIENVKAKIQDREGLRPDHQRLIFHGEELFTEDNRTLADYGIRN 224
Query: 327 RFSTSSCFGFKGRRMIWL 380
R + +G I++
Sbjct: 225 RSTLCLALRLRGDMYIFV 242
Score = 52.0 bits (119), Expect = 2e-07
Identities = 24/76 (31%), Positives = 43/76 (56%)
Frame = +3
Query: 153 KTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYKVQGRF 332
+T T K I +++E +D ++ +K ++ K GIP +QRLIF G+ + +T DY +Q
Sbjct: 481 ETPTCKTITLEVESSDTIDNVKVKIQHKVGIPLDRQRLIFGGRVLVGSRTLLDYNIQKGS 540
Query: 333 STSSCFGFKGRRMIWL 380
+ F +G I++
Sbjct: 541 TIHQLFLQRGGMQIFI 556
Score = 46.8 bits (106), Expect = 7e-06
Identities = 18/56 (32%), Positives = 34/56 (60%)
Frame = +3
Query: 156 TLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYKVQ 323
+ TG+ +++E +D ++ +K ++ +KE IP RLIF+GK + +T Y +Q
Sbjct: 249 SFTGENFILEVESSDTIDNVKAKLQDKERIPMDLHRLIFAGKPLEGGRTLAHYNIQ 304
>At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam
profile: PF00240 ubiquitin family
Length = 158
Score = 72.1 bits (169), Expect = 2e-13
Identities = 31/62 (50%), Positives = 43/62 (69%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M I +KTLTG+ I +++E D +E IK ++ +K+GIP QQRLIF GKQ+ D T DY
Sbjct: 86 MFIFIKTLTGRRIVLEVENCDTIENIKAKIQDKQGIPVDQQRLIFKGKQLEDGLTLADYN 145
Query: 318 VQ 323
+Q
Sbjct: 146 IQ 147
>At1g53950.1 68414.m06145 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 216
Score = 51.6 bits (118), Expect = 3e-07
Identities = 22/48 (45%), Positives = 34/48 (70%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGK 281
M+I +KTLTG+ +++ +D + +K + EKEGIP +QQRLIF G+
Sbjct: 50 MMIFIKTLTGRTNTYEVKGSDTIRELKAKHEEKEGIPVEQQRLIFQGR 97
>At5g38470.1 68418.m04650 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform I GI:1914683 from [Daucus carota]
Length = 378
Score = 48.4 bits (110), Expect = 2e-06
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEG--IPPQQQRLIFSGKQMNDEKTAQD 311
M I VKTL+G EI+++P DKV +K + +G P +Q LI GK + DE T ++
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAEYPAAKQMLIHQGKVLKDETTLEE 60
Query: 312 YKV 320
V
Sbjct: 61 NNV 63
>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 299
Score = 46.4 bits (105), Expect = 1e-05
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEG---IPPQQQRLIFSGKQMNDEKTAQ 308
M I VKTL G EI+++P D V +K + +G P +Q LI GK + DE T +
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 309 DYKV 320
+ KV
Sbjct: 61 ENKV 64
>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 419
Score = 46.4 bits (105), Expect = 1e-05
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEG---IPPQQQRLIFSGKQMNDEKTAQ 308
M I VKTL G EI+++P D V +K + +G P +Q LI GK + DE T +
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 309 DYKV 320
+ KV
Sbjct: 61 ENKV 64
>At1g16190.1 68414.m01939 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota]
Length = 368
Score = 45.6 bits (103), Expect = 2e-05
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXE---KEGIPPQQQRLIFSGKQMNDEKTAQ 308
M + VKTL G EI + PTD + +K + + K+ P QQ LI +GK + DE T
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 309 DYKV 320
+ KV
Sbjct: 61 ENKV 64
>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00240: Ubiquitin family, PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 44.4 bits (100), Expect = 4e-05
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +3
Query: 117 NNYNSFKMLIKVKTLTG-KEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMND 293
N S ++ I V+ ++G K I I E D VE++ R+ K IP +QR+I+ GKQ+
Sbjct: 88 NRPESTRLQIFVRMMSGGKTIVIHAEKYDTVEKLHQRIEWKTKIPALEQRVIYKGKQLQR 147
Query: 294 EKTAQDYKVQ 323
E + Y ++
Sbjct: 148 ENSLTYYSIE 157
>At1g79650.3 68414.m09289 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 351
Score = 42.7 bits (96), Expect = 1e-04
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEG---IPPQQQRLIFSGKQMNDEKTAQ 308
M + VKTL G EI + P+D + +K + + +G P QQ LI +GK + DE +
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 309 DYKV 320
+ KV
Sbjct: 61 ENKV 64
>At1g79650.2 68414.m09288 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 365
Score = 42.7 bits (96), Expect = 1e-04
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEG---IPPQQQRLIFSGKQMNDEKTAQ 308
M + VKTL G EI + P+D + +K + + +G P QQ LI +GK + DE +
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 309 DYKV 320
+ KV
Sbjct: 61 ENKV 64
>At1g79650.1 68414.m09287 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 371
Score = 42.7 bits (96), Expect = 1e-04
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEG---IPPQQQRLIFSGKQMNDEKTAQ 308
M + VKTL G EI + P+D + +K + + +G P QQ LI +GK + DE +
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 309 DYKV 320
+ KV
Sbjct: 61 ENKV 64
>At5g42220.1 68418.m05139 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 879
Score = 40.7 bits (91), Expect = 5e-04
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +3
Query: 144 IKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYKVQ 323
+ +KTL + + + V K ++ + G+P QQRLIF G+ + D+ +Y ++
Sbjct: 26 LNIKTLDSRTYTFQVNKNETVLLFKEKIASETGVPVGQQRLIFRGRVLKDDHPLSEYHLE 85
>At5g16090.1 68418.m01880 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 142
Score = 40.7 bits (91), Expect = 5e-04
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEG---IPPQQQRLIFSGKQMNDEKTAQ 308
M I VKTL G EI+++P D V +K + G P QQ LI +++ DE T +
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTME 60
Query: 309 DYKV 320
KV
Sbjct: 61 ANKV 64
>At4g03350.1 68417.m00457 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 263
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M + + T TG I I+ + V +IK ++ + +GIP +Q L GK + D+ DY
Sbjct: 1 MNVDIDTETGSSFSITIDFGETVLQIKEKIEKSQGIPVSKQILYLDGKALEDDLHKIDYM 60
Query: 318 V 320
+
Sbjct: 61 I 61
>At4g02970.1 68417.m00404 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 270
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 317
M + + T TG I I+ + V IK ++ + +GIP +Q L GK + D+ DY
Sbjct: 1 MNVYIDTETGSSFSITIDFGETVLEIKEKIEKSQGIPVSKQILYLDGKALEDDLHKIDYM 60
Query: 318 V 320
+
Sbjct: 61 I 61
>At1g11970.1 68414.m01383 hypothetical protein
Length = 99
Score = 38.7 bits (86), Expect = 0.002
Identities = 16/35 (45%), Positives = 27/35 (77%)
Frame = +3
Query: 144 IKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIP 248
+K + L+ K+I+I+I+P DK+E+IK + E+ GIP
Sbjct: 45 VKSQFLSEKKIDIEIDPMDKIEQIKEGIEEEIGIP 79
>At1g64470.1 68414.m07309 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 213
Score = 35.9 bits (79), Expect = 0.013
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +3
Query: 111 TINNYNSFKMLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQM- 287
T +Y S K ++ +++G + + I +D + +K R+ G ++Q+L+FSG+++
Sbjct: 26 TTTHY-SVKSVLVFLSVSGSTMPMLILESDSIAEVKLRIQTCNGFRVRRQKLVFSGRELA 84
Query: 288 NDEKTAQDYKVQG 326
+ +DY V G
Sbjct: 85 RNASRVKDYGVTG 97
>At5g11080.1 68418.m01294 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 352
Score = 35.1 bits (77), Expect = 0.024
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 144 IKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQ-RLIFSGKQMNDEKTAQDYKV 320
IK+K L + +E T V +K + G+ P++Q RL+F G+ + +++ DY V
Sbjct: 13 IKIKILHSTTHTLSVERTIPVRDLKQDICYYCGVSPERQPRLLFRGRVLKNDQRLSDYHV 72
Query: 321 Q 323
+
Sbjct: 73 E 73
>At5g40630.1 68418.m04932 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 165
Score = 33.5 bits (73), Expect = 0.072
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 144 IKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEK 299
++V T++ EI I+ +K + GI ++QRL+F GK+ D +
Sbjct: 81 LRVSTVSQLSYEISIDANSTFGELKMMIAIVSGIEAKEQRLLFRGKEREDRE 132
>At5g14360.1 68418.m01678 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 163
Score = 33.5 bits (73), Expect = 0.072
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 141 LIKVKTLTGKEI-EIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEK 299
LI ++ T ++ IE T +K + G+ P+QQRL+F GK+ D +
Sbjct: 69 LISIRVSTFAHFHDLSIEATSTFGELKMVLSLLTGLEPKQQRLVFKGKEREDHE 122
>At4g03370.1 68417.m00459 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 295
Score = 31.5 bits (68), Expect = 0.29
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMND 293
M + V+ +G IDI D V K ++ + IP +Q + F GK + D
Sbjct: 1 MKMTVENESGSTFSIDIGLQDTVLTFKRKIEMTQRIPVSRQTIFFQGKLLED 52
>At4g03360.1 68417.m00458 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 284
Score = 31.1 bits (67), Expect = 0.38
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 150 VKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMND 293
++ +G ID+ D V IK ++ +G P +Q LIF K + D
Sbjct: 6 IENQSGSSFTIDVSFWDTVLMIKRKIEMTQGTPVSKQILIFKRKVLQD 53
>At4g02950.1 68417.m00402 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 318
Score = 31.1 bits (67), Expect = 0.38
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 150 VKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMND 293
++ +G ID+ D V IK ++ +G P +Q LIF K + D
Sbjct: 40 IENQSGSSFTIDVSFWDTVLMIKRKIEMTQGTPVSKQILIFKRKVLQD 87
>At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N
domain-containing protein low similarity to NUB1
(NEDD8-interacting protein) [Homo sapiens] GI:13383476;
contains Pfam profile PF00627: UBA/TS-N domain
Length = 562
Score = 31.1 bits (67), Expect = 0.38
Identities = 15/54 (27%), Positives = 31/54 (57%)
Frame = +3
Query: 144 IKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQRLIFSGKQMNDEKTA 305
+KV G +E+++E + ++ V ++ G+ P+ +LIF+GK + D+ A
Sbjct: 4 LKVAGTWGGILEVELENWT-LNMLRDEVAKRSGLDPESIKLIFAGKILKDDGDA 56
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 29.9 bits (64), Expect = 0.89
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQ-RLIFSGKQMNDEKTAQDY 314
M IK+ L GK + + + V +K + K + ++ + GK++ DEK+ +
Sbjct: 500 MKIKLSNLGGKGSLLTVGREESVSSLKAKASRKLDFKETEAVKMFYMGKELEDEKSLAEQ 559
Query: 315 KVQ 323
VQ
Sbjct: 560 NVQ 562
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240:
Ubiquitin family
Length = 1919
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 138 MLIKVKTLTGKEIEIDIEPTDKVERIKXRVXEKEGIPPQQQ-RLIFSGKQMNDEKTAQDY 314
M I VK+L GK ++ + + V ++ + K + ++ + GK+++DEK+
Sbjct: 661 MKIIVKSLGGKGSKLHVGIEESVSSLRAKASRKLDFKETEAVKMFYKGKELDDEKSLAAQ 720
Query: 315 KVQ 323
VQ
Sbjct: 721 NVQ 723
>At1g22850.1 68414.m02853 expressed protein
Length = 344
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 246 PPQQQRLIFSGKQMNDEKTAQDYK 317
PPQ R F+ K NDE D K
Sbjct: 68 PPQSLRWFFNSKSTNDENDEDDVK 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,118,417
Number of Sequences: 28952
Number of extensions: 139601
Number of successful extensions: 486
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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