Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_G07
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    29   0.76 
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    26   5.4  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    25   9.4  

>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 374 VCQVLTQGTLFFSAEALD*IY 436
           +CQ+L QG +F    A+D IY
Sbjct: 261 ICQILVQGPIFLKTHAIDCIY 281


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 81  YLNMRTSHSQYLTTGGIYGSV 143
           YLN+  +H   +TTG +Y +V
Sbjct: 77  YLNVTLTHDNNITTGKVYSNV 97


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 266 GGPRGRNFIQMKWKELTGLLNSDSSGDPKSEDK 364
           GG   + F++++ K  +  LN+     PK ED+
Sbjct: 149 GGSSSQEFVKLEEKHYSPSLNAMEQTSPKEEDE 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,891
Number of Sequences: 5004
Number of extensions: 33073
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)