Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_G07
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 29   3.3  

>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1252

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 308 ELTGLLNSDSSGDP-KSEDKWRKVCQVL 388
           EL G  N D S DP +  +KWR+VC  L
Sbjct: 316 ELFGTANQDLSQDPPEPSEKWREVCAEL 343


>SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 645

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 241 KWRFIKTIRRSTRSQFYTDEVERVNGITK 327
           +W F+K  RRS       D+ E VNG +K
Sbjct: 550 QWHFVKVFRRSQDGALQIDDDEIVNGTSK 578


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,615,199
Number of Sequences: 59808
Number of extensions: 238051
Number of successful extensions: 503
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)