Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_G06
         (599 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5TLD1 Cluster: Replication protein A small subunit; n=...   224   1e-57

>UniRef50_Q5TLD1 Cluster: Replication protein A small subunit; n=1;
           Bombyx mori|Rep: Replication protein A small subunit -
           Bombyx mori (Silk moth)
          Length = 134

 Score =  224 bits (547), Expect = 1e-57
 Identities = 104/123 (84%), Positives = 104/123 (84%)
 Frame = +2

Query: 110 FPTNDEFIPYVTAGNLASKNGAKVTLWGKVTXVSAXEGFYVKTVXDQXVLIRLRKPLDEP 289
           FP NDEFIPYVTAGNLASKNGAKVTLWGKVT VSA EGFYVKTV DQ VLIRLRKPLDEP
Sbjct: 12  FPNNDEFIPYVTAGNLASKNGAKVTLWGKVTRVSASEGFYVKTVDDQEVLIRLRKPLDEP 71

Query: 290 LXXWYEIIGVSQGKTVLCEDYVSLPDNITANIDIDGHXXXXXXXXXXDDPWNLGXNSHTE 469
           L  WYEIIGVSQGKTVLCEDYVSLPDNITANIDIDGH          DDPWNLG NSHTE
Sbjct: 72  LEGWYEIIGVSQGKTVLCEDYVSLPDNITANIDIDGHKALAKLLAALDDPWNLGENSHTE 131

Query: 470 LXY 478
           L Y
Sbjct: 132 LEY 134


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 466,476,616
Number of Sequences: 1657284
Number of extensions: 7586794
Number of successful extensions: 13064
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 12888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13064
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42317807226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)