Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_G06
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.17c |urg2||uracil phosphoribosyltransferase |Schizosacc...    27   2.1  
SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       26   3.7  

>SPAC1002.17c |urg2||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = -3

Query: 396 PSISMFAVMLSGRET*SSHSTVLPCDTPIISYHXXSGSSKGFLKRI 259
           PS+S+  V+ SG    S+ S VLP D PI  YH      K  L+ I
Sbjct: 51  PSVSIVPVLRSGMSMMSAFSKVLP-DVPI--YHIGIFREKSTLQPI 93


>SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 100

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 43  NFTTAKVLIKKWVITTNLKTTNFP 114
           +FTT +VL  + V+  NL   NFP
Sbjct: 2   DFTTNEVLFSRLVVCKNLTRKNFP 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,185
Number of Sequences: 5004
Number of extensions: 35738
Number of successful extensions: 53
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)