Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_G06
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8775| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_43397| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_50799| Best HMM Match : I-set (HMM E-Value=0)                       28   5.0  
SB_43850| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_50708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_8775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 464

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 221 GFYVKTVXDQXVLIRLRKPLDEPLXXWYEIIGVSQGKTVLCEDYVSL 361
           GFY++ V       R   PLD+P+  W     +   +  LC DY  +
Sbjct: 358 GFYLRDVAVIWAGGRTTPPLDQPVCGWMAKSALETNRKGLCSDYTRI 404


>SB_43397| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
 Frame = +2

Query: 134 PYVTAGNLASKNGAKVTLWGKVTXVSAXEGFYVKTVX--DQXVLIRLRKPLDEPLXXWYE 307
           P V A  +   +G  V   G V+ +++  G  +K +   D+ + + L +PLDE L    E
Sbjct: 4   PRVNASMMKQYSGRLVCFVGSVSEINST-GTELKMLSSDDKMIHVVLPEPLDEALQGVVE 62

Query: 308 IIG-VSQGKTVLCEDYVS 358
           ++G V +  T+  +  +S
Sbjct: 63  VVGRVERDLTISAQRIIS 80


>SB_50799| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1195

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 290  LXXWYEIIGVSQGKTVLCEDYVSLPDNITANIDIDGH 400
            L  WY++   +   T+    Y S+  N+T NI  D H
Sbjct: 1037 LFQWYDVFSGNLNVTLYTVFYTSIEGNLTVNITDDRH 1073


>SB_43850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +2

Query: 29   VKFTTTLQQLKC*LKNG*SRRI*RQPTFPTNDEFIPYVTAGNLASKNGAKVTLWGKVTXV 208
            ++   T Q+LKC L+      +  Q  F  ++ F+P VT   L    G KVT+   +  +
Sbjct: 1398 IRTNATTQRLKCYLQQSNFSGVSGQVVFKESERFLPRVTI--LQHFAGKKVTVGQFIPVM 1455

Query: 209  SAXEGFY 229
               +G Y
Sbjct: 1456 PGDKGCY 1462


>SB_50708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 28  CEIYYNFTTAKVLIKKWVITTNLKTTNFPN*RRIH 132
           C   Y  T  +VL+++  ++TNL T   P   RIH
Sbjct: 182 CPPAYPLTLTRVLVRRQRVSTNLDTRACPPSARIH 216


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,506,401
Number of Sequences: 59808
Number of extensions: 243555
Number of successful extensions: 509
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)