Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_G04
(653 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P40938 Cluster: Replication factor C subunit 3; n=64; E... 291 1e-77
UniRef50_O94697 Cluster: Replication factor C subunit 5; n=2; As... 226 3e-58
UniRef50_Q22W14 Cluster: Replication factor C subunit, putative;... 221 9e-57
UniRef50_A0CIK7 Cluster: Chromosome undetermined scaffold_19, wh... 211 1e-53
UniRef50_P38251 Cluster: Replication factor C subunit 5; n=12; S... 204 2e-51
UniRef50_Q4Q084 Cluster: Replication factor C, subunit 5, putati... 196 3e-49
UniRef50_A4RWV3 Cluster: Predicted protein; n=8; Viridiplantae|R... 191 1e-47
UniRef50_A2E870 Cluster: Putative uncharacterized protein; n=1; ... 165 1e-39
UniRef50_Q5UQE8 Cluster: Putative replication factor C small sub... 148 1e-34
UniRef50_Q8QNA1 Cluster: EsV-1-187; n=1; Ectocarpus siliculosus ... 142 7e-33
UniRef50_Q7QR65 Cluster: GLP_301_13398_14519; n=1; Giardia lambl... 141 2e-32
UniRef50_Q4UIQ4 Cluster: Replication factor C subunit, putative;... 140 3e-32
UniRef50_Q7RNS4 Cluster: Drosophila melanogaster BcDNA.LD06837, ... 136 4e-31
UniRef50_Q8SR43 Cluster: DNA REPLICATION FACTOR C 38kDa SUBUNIT;... 134 2e-30
UniRef50_A3FQ95 Cluster: Replication factor C subunit 5, putativ... 130 3e-29
UniRef50_UPI0000499373 Cluster: activator 1 subunit; n=2; Entamo... 113 3e-24
UniRef50_UPI0000499AAD Cluster: activator 1 subunit; n=1; Entamo... 105 7e-22
UniRef50_A7PUS7 Cluster: Chromosome chr4 scaffold_32, whole geno... 104 2e-21
UniRef50_A4IBL6 Cluster: Replication factor C, subunit 3, putati... 102 7e-21
UniRef50_Q9XI09 Cluster: F8K7.11 protein; n=11; Eukaryota|Rep: F... 101 2e-20
UniRef50_Q0UV64 Cluster: Putative uncharacterized protein; n=1; ... 100 3e-20
UniRef50_P34429 Cluster: Putative replication factor C subunit 5... 99 5e-20
UniRef50_Q64AI6 Cluster: Replication factor C subunit; n=1; uncu... 99 8e-20
UniRef50_Q9UXF5 Cluster: Replication factor C small subunit; n=1... 99 8e-20
UniRef50_Q8PVY4 Cluster: Replication factor C small subunit; n=1... 98 1e-19
UniRef50_P35249 Cluster: Replication factor C subunit 4; n=34; E... 97 2e-19
UniRef50_Q5CVS5 Cluster: Replication factor C like AAA ATpase; n... 97 3e-19
UniRef50_P40348 Cluster: Replication factor C subunit 2; n=7; Sa... 97 3e-19
UniRef50_Q01F45 Cluster: Rfc5 replication factor C subunit 5 (36... 96 6e-19
UniRef50_A0RYC0 Cluster: Replication factor C small subunit; n=1... 66 7e-19
UniRef50_P38629 Cluster: Replication factor C subunit 3; n=15; D... 96 7e-19
UniRef50_UPI000049A58F Cluster: activator 1 36 kda subunit; n=1;... 95 1e-18
UniRef50_Q5K796 Cluster: DNA replication factor, putative; n=5; ... 95 1e-18
UniRef50_Q8TUC8 Cluster: Replication factor C subunit; n=4; Meth... 95 1e-18
UniRef50_Q2UJ68 Cluster: Replication factor C; n=15; Pezizomycot... 95 1e-18
UniRef50_Q9GR09 Cluster: Replication factor C3; n=9; Aconoidasid... 95 2e-18
UniRef50_P40937 Cluster: Replication factor C subunit 5; n=51; E... 94 3e-18
UniRef50_P53016 Cluster: Replication factor C subunit 4; n=2; Ca... 94 3e-18
UniRef50_A5E7K0 Cluster: Activator 1 41 kDa subunit; n=1; Lodder... 93 4e-18
UniRef50_Q5UZE5 Cluster: Replication factor C small subunit; n=5... 93 5e-18
UniRef50_Q9GR07 Cluster: Replication factor C subunit 2; n=6; Pl... 91 2e-17
UniRef50_A2X8Q4 Cluster: Putative uncharacterized protein; n=2; ... 91 2e-17
UniRef50_Q4UIH2 Cluster: Replication factor C subunit (RPC2 homo... 91 3e-17
UniRef50_A7ATE5 Cluster: Replication factor C3 protein, putative... 91 3e-17
UniRef50_A7DR59 Cluster: Replication factor C; n=1; Candidatus N... 91 3e-17
UniRef50_A0CAF3 Cluster: Chromosome undetermined scaffold_161, w... 90 5e-17
UniRef50_Q5CUE4 Cluster: Replication factor RFC3 AAA+ ATpase; n=... 89 7e-17
UniRef50_Q86EA0 Cluster: Clone ZZD636 mRNA sequence; n=2; Bilate... 89 1e-16
UniRef50_Q7QUZ0 Cluster: GLP_61_35037_36092; n=1; Giardia lambli... 89 1e-16
UniRef50_Q2FUA8 Cluster: Replication factor C subunit; n=1; Meth... 88 2e-16
UniRef50_UPI0000DB75B4 Cluster: PREDICTED: similar to CG8142-PA;... 87 3e-16
UniRef50_Q5UP47 Cluster: Putative replication factor C small sub... 87 3e-16
UniRef50_A7SA25 Cluster: Predicted protein; n=2; Nematostella ve... 87 5e-16
UniRef50_A3CUW4 Cluster: Replication factor C; n=2; Methanomicro... 87 5e-16
UniRef50_UPI0000498FA9 Cluster: activator 1 subunit; n=1; Entamo... 86 6e-16
UniRef50_Q7T2C9 Cluster: Rfc4 protein; n=34; Fungi/Metazoa group... 86 6e-16
UniRef50_Q977Z9 Cluster: Replication factor C small subunit; n=4... 86 6e-16
UniRef50_Q8QNA5 Cluster: EsV-1-182; n=1; Ectocarpus siliculosus ... 86 8e-16
UniRef50_Q245Y3 Cluster: ATPase, AAA family protein; n=2; Oligoh... 85 1e-15
UniRef50_A4I6D8 Cluster: Replication factor C, subunit 4, putati... 85 2e-15
UniRef50_Q4WW89 Cluster: Replication factor C subunit; n=1; Aspe... 85 2e-15
UniRef50_Q8SQM0 Cluster: REPLICATION FACTOR C (ACTIVATOR 1) 37kD... 59 8e-15
UniRef50_Q4Q732 Cluster: Replication factor C, subunit 2, putati... 82 1e-14
UniRef50_A2SRY4 Cluster: DNA polymerase III gamma/tau subunits-l... 82 1e-14
UniRef50_P35250 Cluster: Replication factor C subunit 2; n=103; ... 82 1e-14
UniRef50_Q5UQ72 Cluster: Putative replication factor C small sub... 79 1e-13
UniRef50_A2E6V9 Cluster: ATPase, AAA family protein; n=2; Tricho... 78 2e-13
UniRef50_A0EG83 Cluster: Chromosome undetermined scaffold_95, wh... 78 2e-13
UniRef50_Q8WSL8 Cluster: Replication factor C subunit 4; n=6; Pl... 78 2e-13
UniRef50_A2DS36 Cluster: ATPase, AAA family protein; n=1; Tricho... 77 3e-13
UniRef50_Q7R657 Cluster: GLP_574_161256_160291; n=1; Giardia lam... 77 5e-13
UniRef50_Q8SSI2 Cluster: DNA REPLICATION FACTOR C (ACTIVATOR 1) ... 55 3e-12
UniRef50_Q2NH89 Cluster: Replication factor C small subunit; n=2... 74 3e-12
UniRef50_A6R5J4 Cluster: Activator 1 subunit 3; n=1; Ajellomyces... 72 1e-11
UniRef50_Q8TZC4 Cluster: Replication factor C small subunit (RFC... 70 6e-11
UniRef50_UPI0000499C0F Cluster: Activator 1 40 kDa subunit; n=1;... 68 2e-10
UniRef50_Q8QKY2 Cluster: EsV-1-87; n=1; Ectocarpus siliculosus v... 68 2e-10
UniRef50_O57852 Cluster: Replication factor C small subunit (RFC... 66 7e-10
UniRef50_Q8QN66 Cluster: EsV-1-224; n=1; Ectocarpus siliculosus ... 64 2e-09
UniRef50_A5YSV5 Cluster: Replication factor C small subunit II; ... 64 4e-09
UniRef50_UPI0000E4A8C8 Cluster: PREDICTED: similar to replicatio... 62 9e-09
UniRef50_Q8G0U2 Cluster: DNA polymerase III, delta prime subunit... 62 9e-09
UniRef50_Q5UZL1 Cluster: Replication factor C small subunit; n=2... 62 9e-09
UniRef50_Q9A7A2 Cluster: DNA polymerase III, delta prime subunit... 62 1e-08
UniRef50_Q7QWA3 Cluster: GLP_177_25642_24674; n=1; Giardia lambl... 60 3e-08
UniRef50_A6R3U6 Cluster: Activator 1 37 kDa subunit; n=1; Ajello... 58 1e-07
UniRef50_Q2RZH6 Cluster: DNA polymerase III, subunits gamma and ... 56 7e-07
UniRef50_Q1YNM8 Cluster: DNA polymerase III, delta prime subunit... 56 7e-07
UniRef50_A3ABV4 Cluster: Putative uncharacterized protein; n=1; ... 56 1e-06
UniRef50_Q58817 Cluster: Replication factor C small subunit (RFC... 56 1e-06
UniRef50_Q4TFR9 Cluster: Chromosome undetermined SCAF4252, whole... 55 1e-06
UniRef50_P50531 Cluster: Checkpoint protein rad17; n=1; Schizosa... 55 1e-06
UniRef50_Q1NDV9 Cluster: DNA polymerase III delta prime subunit;... 55 2e-06
UniRef50_UPI0001554DFB Cluster: PREDICTED: similar to olfactory ... 54 2e-06
UniRef50_Q1YTP5 Cluster: DNA polymerase III, delta prime subunit... 54 3e-06
UniRef50_Q9AYK3 Cluster: Putative replication factor; n=3; Oryza... 54 3e-06
UniRef50_Q176Y6 Cluster: Replication factor C, 37kD-subunit, put... 53 7e-06
UniRef50_Q9V2G4 Cluster: Replication factor C small subunit (RFC... 52 9e-06
UniRef50_A7HJR0 Cluster: DNA polymerase III, subunits gamma and ... 52 2e-05
UniRef50_Q6FZU9 Cluster: DNA polymerase III, delta prime subunit... 51 2e-05
UniRef50_Q0BT78 Cluster: DNA polymerase III, delta' subunit; n=2... 51 3e-05
UniRef50_A1U0Y9 Cluster: DNA-directed DNA polymerase; n=3; Marin... 51 3e-05
UniRef50_Q4FLY1 Cluster: Probable DNA polymerase III; n=2; Candi... 50 4e-05
UniRef50_Q1GTQ0 Cluster: DNA-directed DNA polymerase; n=1; Sphin... 50 4e-05
UniRef50_A5V2B2 Cluster: DNA polymerase III, subunits gamma and ... 50 4e-05
UniRef50_Q8SSG6 Cluster: DNA REPLICATION FACTOR (ACTIVATOR 1) 36... 50 4e-05
UniRef50_Q9QXI2 Cluster: Replication factor C subunit 2; n=8; Eu... 50 5e-05
UniRef50_Q9PFI1 Cluster: DNA polymerase III, delta subunit; n=15... 50 5e-05
UniRef50_Q7UK75 Cluster: DNA polymerase III, tau/gamma subunit; ... 50 5e-05
UniRef50_UPI0000F31775 Cluster: Cell cycle checkpoint protein RA... 50 6e-05
UniRef50_Q3AG11 Cluster: Putative DNA polymerase III, delta prim... 50 6e-05
UniRef50_Q5GQL5 Cluster: Sliding clamp loader gp44; n=5; root|Re... 50 6e-05
UniRef50_Q9KQI3 Cluster: DNA polymerase III, delta prime subunit... 49 9e-05
UniRef50_A6LMU3 Cluster: DNA polymerase III, subunits gamma and ... 49 9e-05
UniRef50_A3VTZ3 Cluster: DNA polymerase III, delta prime subunit... 49 9e-05
UniRef50_A3IWH2 Cluster: DNA polymerase III gamma and tau subuni... 49 9e-05
UniRef50_Q6MDZ7 Cluster: Probable DNA-directed DNA polymerase II... 48 1e-04
UniRef50_A7HD56 Cluster: DNA polymerase III, delta prime subunit... 48 1e-04
UniRef50_A4E9Y5 Cluster: Putative uncharacterized protein; n=1; ... 48 1e-04
UniRef50_A3UCJ6 Cluster: DNA polymerase III, delta prime subunit... 48 1e-04
UniRef50_Q7CZ44 Cluster: AGR_C_2759p; n=6; Rhizobiaceae|Rep: AGR... 48 2e-04
UniRef50_A4M5U6 Cluster: DNA polymerase III, subunits gamma and ... 48 2e-04
UniRef50_A0UX52 Cluster: DNA-directed DNA polymerase; n=1; Clost... 48 2e-04
UniRef50_Q98RV1 Cluster: Replication factor C 37 KD subunit; n=1... 48 2e-04
UniRef50_Q6WI74 Cluster: Gp44; n=1; Vibrio phage KVP40|Rep: Gp44... 48 2e-04
UniRef50_P52024 Cluster: DNA polymerase III subunit delta'; n=19... 48 2e-04
UniRef50_UPI0000DAE388 Cluster: hypothetical protein Rgryl_01000... 48 3e-04
UniRef50_Q0A8S3 Cluster: DNA polymerase III, delta prime subunit... 48 3e-04
UniRef50_A7HK43 Cluster: DNA polymerase III gamma/tau subunits-l... 48 3e-04
UniRef50_Q9RMF0 Cluster: DNA polymerase III subunits tau and gam... 47 3e-04
UniRef50_Q7P6U1 Cluster: DNA polymerase III subunit gamma/tau; n... 47 3e-04
UniRef50_A5FRM9 Cluster: DNA polymerase III, subunits gamma and ... 47 3e-04
UniRef50_A4CAL1 Cluster: Putative DNA polymerase III delta' subu... 47 3e-04
UniRef50_Q5NNJ5 Cluster: DNA polymerase III delta prime subunit;... 47 5e-04
UniRef50_Q47DZ6 Cluster: DNA polymerase III delta prime subunit;... 47 5e-04
UniRef50_Q11HZ8 Cluster: DNA polymerase III, delta prime subunit... 47 5e-04
UniRef50_A7D8N2 Cluster: DNA-directed DNA polymerase; n=2; Methy... 47 5e-04
UniRef50_A6VXK9 Cluster: DNA polymerase III, delta prime subunit... 47 5e-04
UniRef50_A0KKI0 Cluster: DNA polymerase III, delta' subunit; n=2... 47 5e-04
UniRef50_Q9WZF2 Cluster: DNA polymerase III, gamma and tau subun... 46 6e-04
UniRef50_Q8YMK1 Cluster: DNA polymerase III gamma and tau subuni... 46 6e-04
UniRef50_Q82X62 Cluster: DnaX; DNA polymerase III (Subunits tau ... 46 8e-04
UniRef50_A5IZC5 Cluster: DNA polymerase III subunit; n=1; Mycopl... 46 8e-04
UniRef50_Q5E417 Cluster: DNA polymerase III, delta' subunit; n=1... 46 0.001
UniRef50_Q2STA6 Cluster: DNA polymerase III gamma-tau subunits; ... 46 0.001
UniRef50_A0L8F3 Cluster: DNA polymerase III, subunits gamma and ... 46 0.001
UniRef50_UPI0000DAE674 Cluster: hypothetical protein Rgryl_01000... 45 0.001
UniRef50_Q1N4U3 Cluster: DNA polymerase III subunit delta; n=1; ... 45 0.001
UniRef50_A6FHN9 Cluster: HolB; n=1; Moritella sp. PE36|Rep: HolB... 45 0.001
UniRef50_A4SXG7 Cluster: DNA-directed DNA polymerase; n=1; Polyn... 45 0.001
UniRef50_Q4AHZ6 Cluster: DNA-directed DNA polymerase; n=1; Chlor... 45 0.002
UniRef50_Q18U88 Cluster: DNA polymerase III, subunits gamma and ... 45 0.002
UniRef50_Q181E8 Cluster: Putative DNA polymerase III, delta' sub... 45 0.002
UniRef50_A0YGP8 Cluster: DNA polymerase III subunit delta; n=1; ... 45 0.002
UniRef50_Q7NXL6 Cluster: DNA polymerase subunits gamma and tau; ... 44 0.002
UniRef50_Q6MH32 Cluster: DNA polymerase III gamma and tau subuni... 44 0.002
UniRef50_Q2J4Y9 Cluster: DNA-directed DNA polymerase precursor; ... 44 0.002
UniRef50_A7BV86 Cluster: DNA polymerase III, delta prime subunit... 44 0.002
UniRef50_A6D7X6 Cluster: DNA polymerase III subunit delta'; n=1;... 44 0.002
UniRef50_A4SWQ4 Cluster: DNA polymerase III, subunits gamma and ... 44 0.002
UniRef50_A3VPV6 Cluster: DNA polymerase III subunits gamma and t... 44 0.002
UniRef50_Q2RTP3 Cluster: DNA-directed DNA polymerase; n=1; Rhodo... 44 0.003
UniRef50_Q2NU34 Cluster: DNA polymerase III delta prime subunit;... 44 0.003
UniRef50_Q28SW9 Cluster: DNA-directed DNA polymerase; n=25; Rhod... 44 0.003
UniRef50_Q0VQM5 Cluster: DNA polymerase III, delta prime subunit... 44 0.003
UniRef50_A6BZZ4 Cluster: DNA polymerase III, tau/gamma subunit; ... 44 0.003
UniRef50_O75943 Cluster: Cell cycle checkpoint protein RAD17; n=... 44 0.003
UniRef50_A6GP69 Cluster: DNA-directed DNA polymerase; n=1; Limno... 44 0.004
UniRef50_A0Z287 Cluster: DNA polymerase III subunit delta; n=1; ... 44 0.004
UniRef50_Q8XHN4 Cluster: DNA polymerase III delta' subunit; n=3;... 43 0.006
UniRef50_Q2GE30 Cluster: Putative uncharacterized protein; n=1; ... 43 0.006
UniRef50_A6LPM5 Cluster: DNA polymerase III delta' subunit; n=1;... 43 0.006
UniRef50_A4BMM6 Cluster: DNA polymerase III, delta prime subunit... 43 0.006
UniRef50_A4B798 Cluster: DNA polymerase III subunit delta; n=1; ... 43 0.006
UniRef50_A3ISF6 Cluster: DNA-directed DNA polymerase; n=3; Cyano... 43 0.006
UniRef50_A2BZ44 Cluster: DNA polymerase, gamma and tau subunits;... 43 0.006
UniRef50_A1AWB5 Cluster: DNA polymerase III, subunits gamma and ... 43 0.006
UniRef50_UPI0000E0FA0C Cluster: DNA polymerase III subunit delta... 43 0.007
UniRef50_Q2Y982 Cluster: DNA polymerase III, delta prime subunit... 43 0.007
UniRef50_Q1Q394 Cluster: Similar to DNA polymerase III subunit g... 43 0.007
UniRef50_Q0B0W5 Cluster: DNA-directed DNA polymerase; n=1; Syntr... 43 0.007
UniRef50_A7INF3 Cluster: DNA-directed DNA polymerase; n=1; Xanth... 43 0.007
UniRef50_A4XJ39 Cluster: DNA polymerase III, subunits gamma and ... 43 0.007
UniRef50_Q601S8 Cluster: DNA polymerase III gamma-tau subunits; ... 42 0.010
UniRef50_Q1H170 Cluster: DNA polymerase III, delta prime subunit... 42 0.010
UniRef50_A3YHR7 Cluster: DNA polymerase III subunit delta; n=1; ... 42 0.010
UniRef50_A3Y409 Cluster: DNA polymerase III subunit delta; n=3; ... 42 0.010
UniRef50_Q1GV06 Cluster: DNA polymerase III, subunits gamma and ... 42 0.013
UniRef50_Q1D8K6 Cluster: DNA polymerase III, delta' subunit; n=2... 42 0.013
UniRef50_A7CST5 Cluster: DNA polymerase III, subunits gamma and ... 42 0.013
UniRef50_A6DLE8 Cluster: DNA polymerase III, gamma and tau subun... 42 0.013
UniRef50_UPI0000E87FCE Cluster: DNA-directed DNA polymerase; n=1... 42 0.017
UniRef50_Q3SIN0 Cluster: DNA polymerase III delta prime subunit;... 42 0.017
UniRef50_Q3A8S0 Cluster: Putative DNA polymerase III, gamma/tau ... 42 0.017
UniRef50_Q2RMH2 Cluster: DNA polymerase III, subunits gamma and ... 42 0.017
UniRef50_A5D6B1 Cluster: DNA polymerase III, gamma/tau subunits;... 42 0.017
UniRef50_Q87N27 Cluster: DNA polymerase III, delta prime subunit... 41 0.023
UniRef50_Q4FNB0 Cluster: DNA-directed DNA polymerase gamma/tau s... 41 0.023
UniRef50_O67707 Cluster: DNA polymerase III gamma subunit; n=3; ... 41 0.023
UniRef50_Q0C177 Cluster: Putative DNA polymerase III, delta prim... 41 0.023
UniRef50_Q6J2Q0 Cluster: Gp44; n=1; Acinetobacter phage 133|Rep:... 41 0.023
UniRef50_Q98RF6 Cluster: DNA POLYMERASE III SUBUNITS GAMMA AND T... 41 0.030
UniRef50_Q899F8 Cluster: DNA polymerase III delta subunit; n=1; ... 41 0.030
UniRef50_Q6F0E2 Cluster: DNA polymerase III delta' subunit; n=1;... 41 0.030
UniRef50_Q5P0G2 Cluster: DNA-directed DNA polymerase III, delta ... 41 0.030
UniRef50_Q5FHH2 Cluster: DNA polymerase III subunit gamma; n=5; ... 41 0.030
UniRef50_Q2BG76 Cluster: DNA polymerase III subunit delta; n=1; ... 41 0.030
UniRef50_Q21K67 Cluster: DNA polymerase III, delta prime subunit... 41 0.030
UniRef50_A7HXT6 Cluster: ATPase involved in DNA replication; n=5... 41 0.030
UniRef50_A7CWL2 Cluster: DNA polymerase III gamma/tau subunits-l... 41 0.030
UniRef50_A3ZPF5 Cluster: DNA polymerase III gamma and tau subuni... 41 0.030
UniRef50_A2SGX8 Cluster: DNA-directed DNA polymerase; n=1; Methy... 41 0.030
UniRef50_A1W8D6 Cluster: DNA polymerase III, subunits gamma and ... 41 0.030
UniRef50_Q5UQ47 Cluster: Putative replication factor C small sub... 41 0.030
UniRef50_UPI00015BD213 Cluster: UPI00015BD213 related cluster; n... 40 0.039
UniRef50_Q8DJU0 Cluster: DNA polymerase III gamma and tau subuni... 40 0.039
UniRef50_Q0AIK8 Cluster: DNA polymerase III, delta prime subunit... 40 0.039
UniRef50_A7HGU5 Cluster: DNA polymerase III, subunits gamma and ... 40 0.039
UniRef50_A3JQW8 Cluster: DNA polymerase III subunits gamma and t... 40 0.039
UniRef50_A0Q3M3 Cluster: DNA polymerase III, delta subunit, puta... 40 0.039
UniRef50_Q9ABG0 Cluster: DNA polymerase III, gamma and tau subun... 40 0.052
UniRef50_Q8A7B5 Cluster: DNA polymerase III subunit gamma/tau; n... 40 0.052
UniRef50_O83970 Cluster: DNA polymerase III, subunits gamma and ... 40 0.052
UniRef50_Q1GKB7 Cluster: DNA polymerase III subunits gamma and t... 40 0.052
UniRef50_Q0APP2 Cluster: DNA-directed DNA polymerase; n=1; Maric... 40 0.052
UniRef50_A7M2L2 Cluster: Putative uncharacterized protein; n=2; ... 40 0.052
UniRef50_A5KMD2 Cluster: Putative uncharacterized protein; n=3; ... 40 0.052
UniRef50_A3WC72 Cluster: DNA polymerase III delta prime subunit;... 40 0.052
UniRef50_Q5CYE3 Cluster: RAD24/Rf-C activator 1 AAA+ ATpase; n=2... 40 0.052
UniRef50_Q55AK2 Cluster: AN1-type Zn finger-containing protein; ... 40 0.052
UniRef50_Q89BN2 Cluster: DNA polymerase III tau subunit; n=22; A... 40 0.069
UniRef50_Q830L8 Cluster: DNA polymerase III, delta prime subunit... 40 0.069
UniRef50_Q7MUS1 Cluster: DNA polymerase III, gamma and tau subun... 40 0.069
UniRef50_Q1QX48 Cluster: DNA polymerase III, delta prime subunit... 40 0.069
UniRef50_A6PRZ6 Cluster: ATPase involved in DNA replication-like... 40 0.069
UniRef50_A6GQQ4 Cluster: AAA ATPase, central region; n=1; Limnob... 40 0.069
UniRef50_A4BDY7 Cluster: DNA polymerase III subunit delta; n=1; ... 40 0.069
UniRef50_Q3LVV8 Cluster: DNA replication factor C; n=1; Bigelowi... 40 0.069
UniRef50_Q54RM2 Cluster: Origin recognition complex subunit 1; n... 40 0.069
UniRef50_Q9PCH3 Cluster: DNA polymerase III subunit; n=12; Xanth... 39 0.091
UniRef50_Q2SIR6 Cluster: DNA polymerase III delta prime subunit;... 39 0.091
UniRef50_Q2LYB8 Cluster: DNA polymerase III subunit gamma/tau; n... 39 0.091
UniRef50_Q1F0S1 Cluster: DNA polymerase III delta prime subunit;... 39 0.091
UniRef50_Q15U04 Cluster: DNA-directed DNA polymerase; n=1; Pseud... 39 0.091
UniRef50_Q58294 Cluster: Replication factor C large subunit; n=6... 39 0.091
UniRef50_Q8EY86 Cluster: DNA polymerase III subunit gamma; n=4; ... 39 0.12
UniRef50_Q73G99 Cluster: DNA polymerase III, gamma and tau subun... 39 0.12
UniRef50_Q5FUU7 Cluster: DNA polymerase III delta prime subunit ... 39 0.12
UniRef50_Q5F9P6 Cluster: Putative DNA polymerase III, delta' sub... 39 0.12
UniRef50_Q3J800 Cluster: DNA-directed DNA polymerase; n=1; Nitro... 39 0.12
UniRef50_A2A0B1 Cluster: DNA polymerase III subunit gamma/tau; n... 39 0.12
UniRef50_A1ISN1 Cluster: DNA polymerase III tau and gamma chains... 39 0.12
UniRef50_A0LWD2 Cluster: DNA polymerase III, delta prime subunit... 39 0.12
UniRef50_Q74AW9 Cluster: DNA polymerase III, delta prime subunit... 38 0.16
UniRef50_O25419 Cluster: DNA polymerase III gamma and tau subuni... 38 0.16
UniRef50_Q1PVI5 Cluster: Similar to DNA polymerase III clamp loa... 38 0.16
UniRef50_A7JFN6 Cluster: DNA polymerase III; n=11; Francisella t... 38 0.16
UniRef50_A5WFF8 Cluster: DNA polymerase III, subunits gamma and ... 38 0.16
UniRef50_A4GJ98 Cluster: DNA polymerase III subunits gamma/tau; ... 38 0.16
UniRef50_A2BNS3 Cluster: DNA polymerase III, delta prime subunit... 38 0.16
UniRef50_A0NSR3 Cluster: DNA polymerase III subunit delta'; n=1;... 38 0.16
UniRef50_Q8K983 Cluster: DNA polymerase III subunit gamma; n=4; ... 38 0.16
UniRef50_Q97M98 Cluster: DNA-polymerase III, gamma subunit; n=1;... 38 0.21
UniRef50_Q8YN65 Cluster: All4705 protein; n=12; Cyanobacteria|Re... 38 0.21
UniRef50_Q6G4V0 Cluster: DNA polymerase III subunit tau; n=6; Rh... 38 0.21
UniRef50_Q6ANB4 Cluster: Related to DNA polymerase III, subunit ... 38 0.21
UniRef50_Q3SLE5 Cluster: DNA polymerase subunits gamma and tau; ... 38 0.21
UniRef50_O84190 Cluster: DNA Pol III Gamma and Tau; n=4; Chlamyd... 38 0.21
UniRef50_A5UZ90 Cluster: DNA polymerase III, delta prime subunit... 38 0.21
UniRef50_A1HPS4 Cluster: DNA polymerase III, delta prime subunit... 38 0.21
UniRef50_A0L8T4 Cluster: DNA polymerase III, delta prime subunit... 38 0.21
UniRef50_Q4L3D4 Cluster: DNA polymerase III gamma and tau subuni... 38 0.28
UniRef50_Q0F3S2 Cluster: DNA polymerase III subunit delta; n=1; ... 38 0.28
UniRef50_A6EHG2 Cluster: DNA polymerase III, tau and gamma subun... 38 0.28
UniRef50_Q7VRB7 Cluster: DNA polymerase III subunit gamma; n=2; ... 37 0.37
UniRef50_Q6AQ60 Cluster: Related to DNA polymerase III, delta su... 37 0.37
UniRef50_Q31HQ8 Cluster: DNA-directed DNA polymerase; n=1; Thiom... 37 0.37
UniRef50_Q2RMF7 Cluster: DNA-directed DNA polymerase; n=1; Moore... 37 0.37
UniRef50_O84338 Cluster: DNA Pol III Gamma and Tau; n=8; Chlamyd... 37 0.37
UniRef50_A6SZH8 Cluster: DNA polymerase III delta' subunit; n=1;... 37 0.37
UniRef50_A5WF95 Cluster: DNA-directed DNA polymerase; n=1; Psych... 37 0.37
UniRef50_A4C5P9 Cluster: Putative DnaX, DNA polymerase III, gamm... 37 0.37
UniRef50_Q9MBA3 Cluster: Cell cycle checkpoint protein RAD17; n=... 37 0.37
UniRef50_P43748 Cluster: DNA polymerase III subunit delta'; n=17... 37 0.37
UniRef50_Q9KT51 Cluster: DNA polymerase III, subunits gamma and ... 37 0.49
UniRef50_Q7VE62 Cluster: ATPase involved in DNA replication; n=1... 37 0.49
UniRef50_Q4HGU7 Cluster: DNA polymerase III gamma and tau subuni... 37 0.49
UniRef50_Q1UAA1 Cluster: DNA polymerase III delta prime subunit;... 37 0.49
UniRef50_Q0FAY2 Cluster: DNA polymerase III subunit delta; n=1; ... 37 0.49
UniRef50_A7GZC8 Cluster: Protein EbsC; n=13; Campylobacter|Rep: ... 37 0.49
UniRef50_A6DGQ5 Cluster: DNA polymerase III subunits gamma and t... 37 0.49
UniRef50_A4T0L3 Cluster: AAA ATPase; n=1; Polynucleobacter sp. Q... 37 0.49
UniRef50_A1W6N3 Cluster: DNA-directed DNA polymerase; n=5; Comam... 37 0.49
UniRef50_Q8RDE3 Cluster: ATPase involved in DNA replication; n=3... 36 0.64
UniRef50_Q8G6Z7 Cluster: Possible DNA polymerase III delta prime... 36 0.64
UniRef50_Q8D3A6 Cluster: HolB protein; n=1; Wigglesworthia gloss... 36 0.64
UniRef50_Q7UQ66 Cluster: DNA polymerase III gamma and tau subuni... 36 0.64
UniRef50_Q6NC57 Cluster: Possible DNA polymerase III tau subunit... 36 0.64
UniRef50_Q3MCF0 Cluster: ATPase; n=3; Nostocales|Rep: ATPase - A... 36 0.64
UniRef50_Q3JCU4 Cluster: ABC transporter, ATPase subunit; n=1; N... 36 0.64
UniRef50_A6QCT9 Cluster: ATPase, AAA family; n=22; Epsilonproteo... 36 0.64
UniRef50_A3ZYH4 Cluster: DNA polymerase III, tau/gamma subunit; ... 36 0.64
UniRef50_A1S561 Cluster: DNA-directed DNA polymerase; n=1; Shewa... 36 0.64
UniRef50_A0LM15 Cluster: DNA polymerase III, subunits gamma and ... 36 0.64
UniRef50_Q6RHU1 Cluster: Gp44 clamp loader subunit; n=2; T4-like... 36 0.64
UniRef50_Q4UBG2 Cluster: Replication factor c-related protein, p... 36 0.64
UniRef50_A7SP76 Cluster: Predicted protein; n=1; Nematostella ve... 36 0.64
UniRef50_UPI0001552A4D Cluster: PREDICTED: hypothetical protein;... 36 0.85
UniRef50_Q7NRQ8 Cluster: DNA-directed DNA polymerase III, delta ... 36 0.85
UniRef50_Q6F0D9 Cluster: DNA polymerase III gamma and tau subuni... 36 0.85
UniRef50_Q2VZ81 Cluster: ATPase involved in DNA replication; n=1... 36 0.85
UniRef50_Q1NYC4 Cluster: DNA polymerase III delta prime subunit;... 36 0.85
UniRef50_A5EY35 Cluster: DNA polymerase III, subunits gamma and ... 36 0.85
UniRef50_A3YHQ6 Cluster: DNA polymerase III subunits gamma and t... 36 0.85
UniRef50_Q56C06 Cluster: Gp44 clamp-loader subunit; n=1; Enterob... 36 0.85
UniRef50_A7ATN2 Cluster: Putative uncharacterized protein; n=1; ... 36 0.85
UniRef50_Q482J4 Cluster: DNA polymerase III, delta prime subunit... 36 1.1
UniRef50_Q1YGT2 Cluster: ATP-binding protein, ABC-type oligopept... 36 1.1
UniRef50_Q1K472 Cluster: DNA polymerase III, subunits gamma and ... 36 1.1
UniRef50_Q180E0 Cluster: Putative type IV pilus-assembly protein... 36 1.1
UniRef50_A6W591 Cluster: DNA polymerase III, delta prime subunit... 36 1.1
UniRef50_A6FBQ8 Cluster: Hypothetical DNA polymerase III, subuni... 36 1.1
UniRef50_A5UTH5 Cluster: DNA polymerase III, subunits gamma and ... 36 1.1
UniRef50_A3QF53 Cluster: DNA polymerase III, subunits gamma and ... 36 1.1
UniRef50_A5BIS8 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_Q9GQW6 Cluster: Replication factor C subunit 1; n=6; Pl... 36 1.1
UniRef50_Q0UVB4 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_Q6D0F3 Cluster: Thiamine import ATP-binding protein thi... 36 1.1
UniRef50_A5UMF4 Cluster: Replication factor C large subunit; n=2... 36 1.1
UniRef50_Q4SDG1 Cluster: Chromosome undetermined SCAF14638, whol... 35 1.5
UniRef50_Q899U1 Cluster: DNA polymerase III subunits gamma and t... 35 1.5
UniRef50_Q7WMF3 Cluster: DNA polymerase III subunit Tau; n=4; Bo... 35 1.5
UniRef50_Q7NK69 Cluster: DNA polymerase III gamma and tau subuni... 35 1.5
UniRef50_Q6NJY2 Cluster: DNA polymerase III subunit gamma/tau; n... 35 1.5
UniRef50_Q62JP0 Cluster: DNA polymerase III, delta prime subunit... 35 1.5
UniRef50_Q2GJU1 Cluster: Conserved domain protein; n=2; Anaplasm... 35 1.5
UniRef50_Q1EZ15 Cluster: DNA polymerase III, subunits gamma and ... 35 1.5
UniRef50_Q12LL5 Cluster: DNA polymerase III, subunits gamma and ... 35 1.5
UniRef50_Q03ZG9 Cluster: DNA polymerase III, gamma/tau subunit; ... 35 1.5
UniRef50_Q03ZG4 Cluster: DNA replication ATPase; n=1; Leuconosto... 35 1.5
UniRef50_A6CH16 Cluster: DNA polymerase III gamma and tau subuni... 35 1.5
UniRef50_A1WSZ0 Cluster: DNA polymerase III, delta prime subunit... 35 1.5
UniRef50_Q16VY2 Cluster: DNA-binding protein smubp-2; n=3; Aedes... 35 1.5
UniRef50_UPI0001554DE1 Cluster: PREDICTED: similar to conserved ... 35 2.0
UniRef50_UPI0001509BDF Cluster: ATPase, AAA family protein; n=1;... 35 2.0
UniRef50_UPI0000E0E6B7 Cluster: putative DnaX, DNA polymerase II... 35 2.0
UniRef50_Q9ZDZ1 Cluster: DNA POLYMERASE III, DELTA SUBUNIT; n=10... 35 2.0
UniRef50_Q9RRS5 Cluster: DNA polymerase III, tau/gamma subunit; ... 35 2.0
UniRef50_Q9KGK9 Cluster: BH0052 protein; n=2; Bacillus|Rep: BH00... 35 2.0
UniRef50_Q8KC20 Cluster: DNA polymerase III, delta subunit, puta... 35 2.0
UniRef50_Q8EU50 Cluster: DNA polymerase III delta subunit; n=1; ... 35 2.0
UniRef50_Q63UU8 Cluster: DNA polymerase III subunit gamma; n=19;... 35 2.0
UniRef50_Q5FTB4 Cluster: DNA polymerase III subunit gamma/tau; n... 35 2.0
UniRef50_Q39FP4 Cluster: DNA-directed DNA polymerase; n=13; Burk... 35 2.0
UniRef50_Q2JLX3 Cluster: DNA polymerase III, subunits gamma and ... 35 2.0
UniRef50_Q117S8 Cluster: DNA polymerase III, subunits gamma and ... 35 2.0
UniRef50_Q0ZHG9 Cluster: DNA polymerase III subunits gamma and t... 35 2.0
UniRef50_A6LWH4 Cluster: Putative uncharacterized protein; n=1; ... 35 2.0
UniRef50_A6GJ36 Cluster: DNA polymerase III, gamma and tau subun... 35 2.0
UniRef50_A4CK17 Cluster: DNA polymerase III subunit gamma/tau; n... 35 2.0
UniRef50_A3XJG3 Cluster: Putative uncharacterized protein; n=1; ... 35 2.0
UniRef50_A0UY99 Cluster: DNA polymerase III, subunits gamma and ... 35 2.0
UniRef50_Q5AF80 Cluster: Putative uncharacterized protein RAD24;... 35 2.0
UniRef50_Q83E34 Cluster: DNA polymerase III, delta prime subunit... 34 2.6
UniRef50_Q6MP27 Cluster: DNA polymerase III delta' subunit; n=1;... 34 2.6
UniRef50_Q3ZZR4 Cluster: DNA polymerase III, delta prime subunit... 34 2.6
UniRef50_Q0IE22 Cluster: DNA polymerase III, subunits gamma and ... 34 2.6
UniRef50_A0LM48 Cluster: SMC domain protein; n=1; Syntrophobacte... 34 2.6
UniRef50_Q16VY1 Cluster: Putative uncharacterized protein; n=1; ... 34 2.6
UniRef50_Q6CHW3 Cluster: Yarrowia lipolytica chromosome A of str... 34 2.6
UniRef50_A5E3H7 Cluster: Putative uncharacterized protein; n=1; ... 34 2.6
UniRef50_Q975D4 Cluster: Replication factor C large subunit; n=5... 34 2.6
UniRef50_Q9V2G3 Cluster: Replication factor C large subunit; n=4... 34 2.6
UniRef50_Q6L0P4 Cluster: Replication factor C large subunit; n=1... 34 2.6
UniRef50_Q6AGD3 Cluster: N-acetyl-gamma-glutamyl-phosphate reduc... 34 2.6
UniRef50_UPI0000E46220 Cluster: PREDICTED: similar to RFC-like D... 34 3.4
UniRef50_UPI000069E85B Cluster: CDNA FLJ26470 fis, clone KDN0433... 34 3.4
UniRef50_Q8Y5U1 Cluster: Lmo1964 protein; n=12; Listeria|Rep: Lm... 34 3.4
UniRef50_Q8KL45 Cluster: Sugar ABC transporter, ATP-binding prot... 34 3.4
UniRef50_Q6FAW7 Cluster: DNA polymerase III, tau and gamma subun... 34 3.4
UniRef50_Q5FM00 Cluster: DNA polymerase III, delta subunit; n=3;... 34 3.4
UniRef50_Q4JSS5 Cluster: DNA polymerase III, delta' subunit; n=1... 34 3.4
UniRef50_Q1QAW7 Cluster: DNA polymerase III, subunits gamma and ... 34 3.4
UniRef50_Q15RT3 Cluster: DNA polymerase III, subunits gamma and ... 34 3.4
UniRef50_A5N6Y7 Cluster: Putative uncharacterized protein; n=1; ... 34 3.4
UniRef50_A1R369 Cluster: Putative DNA polymerase III, delta' sub... 34 3.4
UniRef50_A1K419 Cluster: DNA polymerase III subunit Tau; n=2; Az... 34 3.4
UniRef50_A0V1J2 Cluster: Putative uncharacterized protein; n=2; ... 34 3.4
UniRef50_A0M2F5 Cluster: DNA polymerase III subunit gamma/tau; n... 34 3.4
UniRef50_A5BSK7 Cluster: Putative uncharacterized protein; n=1; ... 34 3.4
UniRef50_Q0C7D8 Cluster: Predicted protein; n=1; Aspergillus ter... 34 3.4
UniRef50_A1RYY4 Cluster: DEAD/DEAH box helicase domain protein; ... 34 3.4
UniRef50_Q2FQR4 Cluster: Replication factor C large subunit; n=2... 34 3.4
UniRef50_P74876 Cluster: DNA polymerase III subunit tau (EC 2.7.... 34 3.4
UniRef50_P43746 Cluster: DNA polymerase III subunit gamma/tau; n... 34 3.4
UniRef50_Q928U2 Cluster: Lin2440 protein; n=25; cellular organis... 33 4.5
UniRef50_Q8ZSD6 Cluster: DNA polymerase III, delta prime subunit... 33 4.5
UniRef50_Q8YU93 Cluster: All2461 protein; n=11; Cyanobacteria|Re... 33 4.5
UniRef50_Q7WJ62 Cluster: DNA polymerase III, delta' subunit; n=4... 33 4.5
UniRef50_Q7M7T5 Cluster: DNA POLYMERASE III SUBUNITS GAMMA AND T... 33 4.5
UniRef50_Q74GZ9 Cluster: DNA polymerase III, gamma and tau subun... 33 4.5
UniRef50_Q3JAL5 Cluster: DNA-directed DNA polymerase; n=1; Nitro... 33 4.5
UniRef50_Q3IHC2 Cluster: Putative DNA polymerase III delta' subu... 33 4.5
UniRef50_Q1ATA7 Cluster: DNA polymerase III, subunits gamma and ... 33 4.5
UniRef50_Q15HV3 Cluster: TcpA; n=3; Clostridium perfringens|Rep:... 33 4.5
UniRef50_Q048X0 Cluster: DNA replication ATPase; n=2; Lactobacil... 33 4.5
UniRef50_A1ZGE7 Cluster: Putative uncharacterized protein; n=2; ... 33 4.5
UniRef50_Q012M6 Cluster: TRNA-splicing endonuclease positive eff... 33 4.5
UniRef50_A5C6Y9 Cluster: Putative uncharacterized protein; n=1; ... 33 4.5
UniRef50_Q239R9 Cluster: ABC transporter family protein; n=2; Te... 33 4.5
UniRef50_Q9Y7G1 Cluster: CDC6 protein; n=3; Candida albicans|Rep... 33 4.5
UniRef50_O34900 Cluster: L-cystine import ATP-binding protein tc... 33 4.5
UniRef50_Q88T02 Cluster: Amino acid ABC transporter, ATP-binding... 33 6.0
UniRef50_Q28KB3 Cluster: ABC transporter related; n=2; Rhodobact... 33 6.0
UniRef50_Q1FKE1 Cluster: DNA polymerase III, subunits gamma and ... 33 6.0
UniRef50_Q1EVT6 Cluster: SMC protein-like; n=2; Clostridiaceae|R... 33 6.0
UniRef50_Q18YZ3 Cluster: ABC transporter related; n=2; Desulfito... 33 6.0
UniRef50_Q01TD0 Cluster: Ig family protein precursor; n=2; cellu... 33 6.0
UniRef50_A7CNF2 Cluster: ATPase involved in DNA replication-like... 33 6.0
UniRef50_A4EUH9 Cluster: Putative uncharacterized protein; n=1; ... 33 6.0
UniRef50_A3IDG6 Cluster: DNA polymerase III subunit delta'; n=1;... 33 6.0
UniRef50_A3DH83 Cluster: DNA-directed DNA polymerase; n=1; Clost... 33 6.0
UniRef50_A1STW9 Cluster: DNA polymerase III, delta prime subunit... 33 6.0
UniRef50_Q0DTK3 Cluster: Os03g0242100 protein; n=4; Oryza sativa... 33 6.0
UniRef50_Q4U921 Cluster: RuvB-like DNA repair helicase, putative... 33 6.0
UniRef50_Q4N1R6 Cluster: DNA helicase RuvB, putative; n=1; Theil... 33 6.0
UniRef50_Q4E3N3 Cluster: Kinesin, putative; n=2; Trypanosoma cru... 33 6.0
UniRef50_Q22SG1 Cluster: Putative uncharacterized protein; n=1; ... 33 6.0
UniRef50_A3MU65 Cluster: Putative uncharacterized protein precur... 33 6.0
UniRef50_A3DNT6 Cluster: AAA ATPase; n=2; cellular organisms|Rep... 33 6.0
UniRef50_Q8F1W7 Cluster: DNA translocase ftsK; n=4; Leptospira|R... 33 6.0
UniRef50_Q9ZCA1 Cluster: DNA POLYMERASE III SUBUNITS GAMMA AND T... 33 7.9
UniRef50_Q98FB0 Cluster: Amino acid ABC transporter, ATP-binding... 33 7.9
UniRef50_Q8EWR1 Cluster: Predicted ATPase; n=1; Mycoplasma penet... 33 7.9
UniRef50_Q609A7 Cluster: DNA polymerase III, gamma and tau subun... 33 7.9
UniRef50_Q5P9F0 Cluster: DNA polymerase III gamma subunit; n=2; ... 33 7.9
UniRef50_Q1D2Y8 Cluster: ClpA/B family protein; n=1; Myxococcus ... 33 7.9
UniRef50_Q18C99 Cluster: DNA polymerase III subunit gamma/tau; n... 33 7.9
UniRef50_Q12AK7 Cluster: DNA-directed DNA polymerase; n=3; Comam... 33 7.9
UniRef50_Q0VNM5 Cluster: DNA polymerase III, gamma and tau subun... 33 7.9
UniRef50_A6FN73 Cluster: Putative uncharacterized protein; n=1; ... 33 7.9
UniRef50_A2U4H5 Cluster: SMC protein-like; n=1; Bacillus coagula... 33 7.9
UniRef50_A1WIC1 Cluster: Type II secretion system protein E; n=1... 33 7.9
UniRef50_A1V9U7 Cluster: DNA polymerase III, subunits gamma and ... 33 7.9
UniRef50_A1K7W3 Cluster: General secretory pathway protein E; n=... 33 7.9
UniRef50_A0GXK7 Cluster: DNA polymerase III, subunits gamma and ... 33 7.9
UniRef50_Q4Z2R8 Cluster: Pseudouridine synthetase, putative; n=3... 33 7.9
UniRef50_Q4DB44 Cluster: Putative uncharacterized protein; n=1; ... 33 7.9
UniRef50_A5DUH6 Cluster: Activator 1 95 kDa subunit; n=1; Lodder... 33 7.9
UniRef50_Q58412 Cluster: Uncharacterized ATP-binding protein MJ1... 33 7.9
UniRef50_O29072 Cluster: Replication factor C large subunit; n=1... 33 7.9
UniRef50_Q7N3Q4 Cluster: Vitamin B12 import ATP-binding protein ... 33 7.9
>UniRef50_P40938 Cluster: Replication factor C subunit 3; n=64;
Eukaryota|Rep: Replication factor C subunit 3 - Homo
sapiens (Human)
Length = 356
Score = 291 bits (714), Expect = 1e-77
Identities = 133/187 (71%), Positives = 158/187 (84%)
Frame = +3
Query: 75 MSLWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELY 254
MSLWVDK+RP L +LDYHKEQA +L+NLVQ DFPHLL+YGPSGAGKKTR+MC+LRELY
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 255 GSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQ 434
G GVE+LR E TTPS KKIEI T++SNYH+EVNP+D G DRVVI +++K VAQ+ Q
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 435 IDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCL 614
+++N QR+FKVV+L EVD LTKDAQHALRRTMEKY++TCRLIL NS S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 615 TISVPAP 635
+ VPAP
Sbjct: 181 AVRVPAP 187
>UniRef50_O94697 Cluster: Replication factor C subunit 5; n=2;
Ascomycota|Rep: Replication factor C subunit 5 -
Schizosaccharomyces pombe (Fission yeast)
Length = 358
Score = 226 bits (553), Expect = 3e-58
Identities = 105/185 (56%), Positives = 143/185 (77%)
Frame = +3
Query: 81 LWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGS 260
LW+D++RPK L LDYHK+ + RL +L ++FPHLL+YGPSGAGKKTRV+ +LRELYG
Sbjct: 2 LWLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYGP 61
Query: 261 GVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQID 440
G E+L+ + F TPS+KK++I VSS +H+E+ P+DVG +DRV++ +L+K+VAQ+ Q+D
Sbjct: 62 GSEKLKIDQRTFLTPSSKKLQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQSAQVD 121
Query: 441 SNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTI 620
++ FKVV++N D+LT+DAQ ALRRTMEKY RLILIANS S++I IRSR L +
Sbjct: 122 LQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMV 181
Query: 621 SVPAP 635
V AP
Sbjct: 182 RVAAP 186
>UniRef50_Q22W14 Cluster: Replication factor C subunit, putative;
n=1; Tetrahymena thermophila SB210|Rep: Replication
factor C subunit, putative - Tetrahymena thermophila
SB210
Length = 358
Score = 221 bits (541), Expect = 9e-57
Identities = 105/187 (56%), Positives = 130/187 (69%), Gaps = 2/187 (1%)
Frame = +3
Query: 81 LWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGS 260
LWVD+ RPK L KLDYH +L+ L DFPHLL+YGP+GAGKKTR M L+E+YG+
Sbjct: 4 LWVDEIRPKSLDKLDYHPLLTEKLQKLAHSEDFPHLLLYGPNGAGKKTRAMAFLQEVYGN 63
Query: 261 GVERLRQETMNFTTPSNKK--IEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQ 434
GV +++ E F N +E+ +SSNYH++V P D DR VI L+K VA THQ
Sbjct: 64 GVHKVKSEEREFKVNPNTSTTVEVNIISSNYHLDVTPADAENQDRAVIQKLIKEVASTHQ 123
Query: 435 IDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCL 614
+D N QR FKV+I+NEVD LT +AQ +LRRTMEKY+ CRLILIA +I RVI +RSRCL
Sbjct: 124 LDPNSQRRFKVIIINEVDRLTLEAQASLRRTMEKYIGRCRLILIAENIGRVILPLRSRCL 183
Query: 615 TISVPAP 635
I V AP
Sbjct: 184 LIRVAAP 190
>UniRef50_A0CIK7 Cluster: Chromosome undetermined scaffold_19, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_19,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 356
Score = 211 bits (516), Expect = 1e-53
Identities = 98/187 (52%), Positives = 132/187 (70%), Gaps = 2/187 (1%)
Frame = +3
Query: 81 LWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGS 260
LW + +PK L LDYH E + L+ L + SDFPHLL YGP+GAGKKTRV+ L+E+YGS
Sbjct: 5 LWTESTKPKSLDSLDYHSEISEILRKLAKNSDFPHLLFYGPNGAGKKTRVLAFLKEVYGS 64
Query: 261 GVERLRQETMNF--TTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQ 434
GV + +E + SN +SS +HI+V P+D HD+V+I L+K VA +HQ
Sbjct: 65 GVYTVTEEEKEYKINETSNTTTSCTVLSSKFHIDVAPSDADHHDKVIIQKLIKEVASSHQ 124
Query: 435 IDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCL 614
++S ++FKVVI+NEVD+LTK+AQ +LRRTMEKY+ CR+ILI S++++I IRSRCL
Sbjct: 125 VNSKQTKDFKVVIINEVDNLTKEAQASLRRTMEKYIERCRIILICESLAKIINPIRSRCL 184
Query: 615 TISVPAP 635
I VPAP
Sbjct: 185 LIRVPAP 191
>UniRef50_P38251 Cluster: Replication factor C subunit 5; n=12;
Saccharomycetales|Rep: Replication factor C subunit 5 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 354
Score = 204 bits (497), Expect = 2e-51
Identities = 100/193 (51%), Positives = 134/193 (69%), Gaps = 6/193 (3%)
Frame = +3
Query: 75 MSLWVDKHRPKDLMKLDYHKEQAVRLKNLVQQS-DFPHLLIYGPSGAGKKTRVMCLLREL 251
MSLWVDK+RPK L L +++E LK+L Q D PHLL+YGP+G GKKTR M LL +
Sbjct: 1 MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
Query: 252 YGSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTH 431
+G GV RL+ + F T SN+K+E+ VSS YH+E+ P+D+G +DR+VI +L+K VAQ
Sbjct: 61 FGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQME 120
Query: 432 QIDSNGQRE-----FKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPA 596
Q+D ++ +K VI+NE + LTKDAQ ALRRTMEKY RLI++ +S+S +I
Sbjct: 121 QVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAP 180
Query: 597 IRSRCLTISVPAP 635
I+SRCL I PAP
Sbjct: 181 IKSRCLLIRCPAP 193
>UniRef50_Q4Q084 Cluster: Replication factor C, subunit 5, putative;
n=4; Trypanosomatidae|Rep: Replication factor C, subunit
5, putative - Leishmania major
Length = 351
Score = 196 bits (479), Expect = 3e-49
Identities = 96/196 (48%), Positives = 135/196 (68%), Gaps = 5/196 (2%)
Frame = +3
Query: 81 LWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGS 260
LWVD++RPK L ++ + E L L + D PHLL YGPSG+GKKTR M +L E+YG
Sbjct: 2 LWVDRYRPKTLKDVELYPELKEVLTRLSKAQDLPHLLFYGPSGSGKKTRAMAMLHEIYGP 61
Query: 261 GVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQID 440
V +R E + +K ++I T+SS +HI++NP+D G +DR ++M +++ +AQT +
Sbjct: 62 SVFSVRLEHKSVQVSDSKVVDIATLSSPHHIDINPSDAGNYDRAIVMQMIREIAQTVPLH 121
Query: 441 S-NGQRE---FKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSR 608
S +G R+ +KVV+LNEVD +++ AQHALRRTMEKY+ TCRL L+ NS SR+IP +RSR
Sbjct: 122 STSGNRKNVPYKVVVLNEVDKMSRTAQHALRRTMEKYMNTCRLFLLCNSTSRLIPPLRSR 181
Query: 609 CLTISVPA-PPXNLKL 653
CL I V + NLKL
Sbjct: 182 CLGIRVASHSKDNLKL 197
>UniRef50_A4RWV3 Cluster: Predicted protein; n=8; Viridiplantae|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 355
Score = 191 bits (465), Expect = 1e-47
Identities = 92/189 (48%), Positives = 129/189 (68%), Gaps = 4/189 (2%)
Frame = +3
Query: 81 LWVDKHRPKDLMKLD-YHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYG 257
LWVDKHRP L + D + QA LK L+ D PHL YGPSGAGKKT + +LRE++G
Sbjct: 2 LWVDKHRPHALGECDAINTAQAKHLKLLIANGDCPHLFFYGPSGAGKKTLALGVLREIFG 61
Query: 258 SGVERLRQETMNFTTPSNKK---IEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQT 428
G E+++ E + N + +E+ +SSN+H E+NP+D G DR V+ +++K +A++
Sbjct: 62 PGAEKVKLENKTWKIDQNDRKIEVELAMMSSNHHCEMNPSDCGSKDRYVVQEVIKEMARS 121
Query: 429 HQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSR 608
IDS+G FKV++L EVD L+++AQ+ LRRTMEKY A+CRL LIA SRV+ A++SR
Sbjct: 122 RPIDSDGCEGFKVLVLTEVDRLSREAQYGLRRTMEKYSASCRLFLIAERPSRVMDALQSR 181
Query: 609 CLTISVPAP 635
CL + VP P
Sbjct: 182 CLPVRVPGP 190
>UniRef50_A2E870 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 346
Score = 165 bits (400), Expect = 1e-39
Identities = 84/187 (44%), Positives = 117/187 (62%)
Frame = +3
Query: 78 SLWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYG 257
+LW+D+HRP +L L LK++ DFPHLL GP G+GKKTRV+ LR+L+
Sbjct: 3 ALWIDQHRPHNLDDLTIQSNANELLKSISGSFDFPHLLFCGPPGSGKKTRVLAFLRKLFN 62
Query: 258 SGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQI 437
+ + L +KKIE+ SS++HIE+ P D G++DR VI +K+VA + +
Sbjct: 63 AELTHLASGFRTIEE-GDKKIEVQVTSSDFHIEITPADAGMNDRHVISYFLKDVAASQVV 121
Query: 438 DSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLT 617
G KVV++NE L+K AQ ALRRTMEKY +CR+ILIA+S+S++I +RSRCL
Sbjct: 122 ---GGFSIKVVVINEAHRLSKLAQQALRRTMEKYAKSCRIILIADSLSQIIEPVRSRCLV 178
Query: 618 ISVPAPP 638
I P P
Sbjct: 179 IRTPRIP 185
>UniRef50_Q5UQE8 Cluster: Putative replication factor C small
subunit L478; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit L478 -
Mimivirus
Length = 370
Score = 148 bits (358), Expect = 1e-34
Identities = 72/183 (39%), Positives = 110/183 (60%), Gaps = 1/183 (0%)
Frame = +3
Query: 90 DKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSGVE 269
+K+RPK ++ + +LK L D PH++I GPSG+GKKT V LL LY V
Sbjct: 5 EKYRPKKPSDFLFNTDVLRQLKYLASNEDVPHIIISGPSGSGKKTLVKFLLEFLYDEDVN 64
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS-N 446
LR+ N S KK EI + SNYHI + PT HD+ ++ +++K A D
Sbjct: 65 ILRKRKYNINGSSTKK-EIEILQSNYHIIIEPTSTN-HDKYILQEIIKQYAMHKSFDIFK 122
Query: 447 GQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISV 626
+R+FK ++++ +++L ++Q ALRRTME+Y TCR I++ N++S+++ +RSRC T V
Sbjct: 123 TKRKFKTIVIHNIENLANNSQAALRRTMERYAKTCRFIMVCNNLSKIMDPLRSRCRTFCV 182
Query: 627 PAP 635
P P
Sbjct: 183 PLP 185
>UniRef50_Q8QNA1 Cluster: EsV-1-187; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-187 - Ectocarpus siliculosus virus 1
Length = 324
Score = 142 bits (344), Expect = 7e-33
Identities = 76/173 (43%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Frame = +3
Query: 129 HKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSGVERLRQETMNFTTPS 308
H E RL ++ + D PHLL +GP G+GK T V LL++LYG GV R+ E T S
Sbjct: 2 HPEIEDRLTSMSRHGDIPHLLFHGPRGSGKMTLVRHLLKKLYGPGVHRVTTEKRVVETAS 61
Query: 309 NKK-IEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS---NGQREFKVVIL 476
+K IEI SNYHIE+ P+D G +D V+ +K +A I + N K ++L
Sbjct: 62 SKHTIEIDVRVSNYHIEMEPSDAGANDTYVVQHAIKEMANNGSIAAVFKNCDVRHKTIVL 121
Query: 477 NEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAP 635
+L+K AQ LRRTMEK+ A+CRL+L++ SRVI +RSRC+ I VP P
Sbjct: 122 RGAGNLSKQAQAGLRRTMEKFTASCRLVLVSTFASRVIEPLRSRCVLIRVPLP 174
>UniRef50_Q7QR65 Cluster: GLP_301_13398_14519; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_301_13398_14519 - Giardia lamblia
ATCC 50803
Length = 373
Score = 141 bits (341), Expect = 2e-32
Identities = 73/183 (39%), Positives = 111/183 (60%)
Frame = +3
Query: 81 LWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGS 260
+W +K+ P L +DYH + ++ + + PHLL++GP G+G+ TRV+ +R +YG
Sbjct: 1 MWCNKYTPTQLEAMDYHCDATRLFISVARAKNPPHLLVHGPRGSGRHTRVLGYIRSVYGV 60
Query: 261 GVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQID 440
TM + T ++ E+ +S+ H+E+NP+++G HD +I ++K A T I
Sbjct: 61 QTLDYIPSTMLYETNTDT-CEVNILSTACHLELNPSEMGNHDVFIIQTVLKETASTSSIG 119
Query: 441 SNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTI 620
+FKVV+L + D L+ AQ ALRR ME+Y ATC+LIL+A SIS +IP I SRC I
Sbjct: 120 D----KFKVVVLQDADKLSFTAQQALRRLMEQYAATCKLILMAESISGLIPPIVSRCFCI 175
Query: 621 SVP 629
VP
Sbjct: 176 RVP 178
>UniRef50_Q4UIQ4 Cluster: Replication factor C subunit, putative;
n=3; Piroplasmida|Rep: Replication factor C subunit,
putative - Theileria annulata
Length = 351
Score = 140 bits (339), Expect = 3e-32
Identities = 65/186 (34%), Positives = 113/186 (60%), Gaps = 4/186 (2%)
Frame = +3
Query: 81 LWVDKHRPKDLMKLDYHKEQAVRLKNLVQQS--DFPHLLIYGPSGAGKKTRVMCLLRELY 254
LW+DKH PK+L HK+ + L LV +S + PH L YGPSGAGKK+R++ LR ++
Sbjct: 2 LWIDKHCPKNLNDFTSHKDLSELLLKLVNKSHGELPHFLFYGPSGAGKKSRILATLRSVF 61
Query: 255 GSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQ 434
G+ V++++ + +++ S E++ S HI++ ++G DR ++ D++++++
Sbjct: 62 GNKVDKIKTDVLSYKDTS----EVVVCQSEVHIQIPCQELGTRDRYIVQDIIRSLSSAPS 117
Query: 435 IDSNGQR--EFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSR 608
+ + ++ + + D LT++AQ ALRRTME Y+ R+ L +SR++P +RSR
Sbjct: 118 ASNFFSKGPSYRAFLFEDADTLTQEAQAALRRTMETYIKNARMFLHVRQLSRIMPPLRSR 177
Query: 609 CLTISV 626
CL I V
Sbjct: 178 CLCIRV 183
>UniRef50_Q7RNS4 Cluster: Drosophila melanogaster BcDNA.LD06837,
putative; n=6; Plasmodium|Rep: Drosophila melanogaster
BcDNA.LD06837, putative - Plasmodium yoelii yoelii
Length = 363
Score = 136 bits (329), Expect = 4e-31
Identities = 61/187 (32%), Positives = 112/187 (59%), Gaps = 2/187 (1%)
Frame = +3
Query: 81 LWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGS 260
+W++K+ P+ L +L+ HK+ RLK L +D PH++ YG G GK TR+ CL++E++
Sbjct: 15 MWLEKYAPRSLDELNIHKDITTRLKKLSVHNDLPHIIFYGSPGGGKSTRIDCLIKEIFKD 74
Query: 261 GVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQID 440
E++ + N T N KI I + SNYH+E+ ++G D++++ +++K +
Sbjct: 75 --EKIIRRPENITNTEN-KININVIQSNYHLELQCFELGTKDKIIVQNIIKELCSYKSSA 131
Query: 441 SNGQRE--FKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCL 614
S ++ +++ + + + L++ AQ LRRT+E Y+ R+IL +S++I ++SRC+
Sbjct: 132 SFFSKKPMYRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKSRCI 191
Query: 615 TISVPAP 635
I VP P
Sbjct: 192 CIRVPLP 198
>UniRef50_Q8SR43 Cluster: DNA REPLICATION FACTOR C 38kDa SUBUNIT;
n=1; Encephalitozoon cuniculi|Rep: DNA REPLICATION
FACTOR C 38kDa SUBUNIT - Encephalitozoon cuniculi
Length = 354
Score = 134 bits (324), Expect = 2e-30
Identities = 67/187 (35%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
Frame = +3
Query: 81 LWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGS 260
+W++K+RP+ ++ +E + LK+ ++ PH++++G SG GKKT ++CL+ LYGS
Sbjct: 2 IWIEKYRPRSFDEMIGREEASGLLKSYTLET-IPHMIVHGRSGHGKKTVLLCLVNHLYGS 60
Query: 261 GVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQID 440
+ ++ T + + KKIE+ + S+ ++E++P+ G HDR VI ++K + QT I
Sbjct: 61 -IPEMKIRTTEVLSGA-KKIEVSYMESDEYVEISPSRYGYHDRAVIQSIIKEMGQTKPIL 118
Query: 441 SNGQRE----FKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSR 608
S R K+V++ ++LT +AQ ALRRT+E Y R++L+ N +SR+I IRSR
Sbjct: 119 SMLARSRRAPIKLVVITSAEELTLEAQAALRRTIEVYSGVLRVVLVCNELSRLIEPIRSR 178
Query: 609 CLTISVP 629
C + +P
Sbjct: 179 CFFLRIP 185
>UniRef50_A3FQ95 Cluster: Replication factor C subunit 5, putative;
n=3; Cryptosporidium|Rep: Replication factor C subunit
5, putative - Cryptosporidium parvum Iowa II
Length = 345
Score = 130 bits (314), Expect = 3e-29
Identities = 69/189 (36%), Positives = 107/189 (56%), Gaps = 4/189 (2%)
Frame = +3
Query: 81 LWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSD--FPHLLIYGPSGAGKKTRVMCLLRELY 254
LW+DK++P+ L L +KE L+ + S+ PHLL YGPSG GKK R+ +L E++
Sbjct: 2 LWIDKYQPRYLRDLKCNKELNSLLEKITSNSNGNIPHLLFYGPSGGGKKVRISSVLHEIF 61
Query: 255 GSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQ 434
G V++++ + + P E + S +H++++ D+G D +V L+K ++
Sbjct: 62 GDSVDKVKADMIK---PEGTNSEFVLCQSPHHMQISAPDLGTKDGIVTQYLIKQLSSQMG 118
Query: 435 IDSNGQR--EFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSR 608
+S + ++V + E D L+ AQ LRRTMEKY RLIL +S +IP +RSR
Sbjct: 119 ANSFFSKGPNYRVFTILEADVLSLKAQAGLRRTMEKYSNNSRLILHCEQLSSIIPPLRSR 178
Query: 609 CLTISVPAP 635
CL I VP P
Sbjct: 179 CLCIRVPLP 187
>UniRef50_UPI0000499373 Cluster: activator 1 subunit; n=2; Entamoeba
histolytica HM-1:IMSS|Rep: activator 1 subunit -
Entamoeba histolytica HM-1:IMSS
Length = 345
Score = 113 bits (272), Expect = 3e-24
Identities = 73/202 (36%), Positives = 103/202 (50%), Gaps = 23/202 (11%)
Frame = +3
Query: 99 RPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSGVERLR 278
RP +LD+ E L NL + D PHLL +GP G+GK TR + L+ +YG GV ++
Sbjct: 5 RPNSFNELDHANEANELLINLSKNKDMPHLLFHGPEGSGKYTRALLYLKNIYGDGVMKIE 64
Query: 279 QETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVA--QTHQ------ 434
T K EI SS YH+E+ P++ D++VI + VK++ QT
Sbjct: 65 PSTTVIDVKGKPK-EINLRSSPYHVELIPSNATESDKLVIQEYVKSLTTFQTLSSLIQQK 123
Query: 435 ------IDSNG---------QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIA 569
+ SN Q +F+V+++ + D LT +AQ +LRRTME CR IL
Sbjct: 124 SINRLILSSNSEPKQCLKEKQTKFRVIMIFDADHLTNEAQQSLRRTMETGSEVCRFILFC 183
Query: 570 NSISRVIPAIRSRCLTISVPAP 635
+ VI IRSRC+ I VP P
Sbjct: 184 TNPCSVIQPIRSRCVMIRVPLP 205
>UniRef50_UPI0000499AAD Cluster: activator 1 subunit; n=1; Entamoeba
histolytica HM-1:IMSS|Rep: activator 1 subunit -
Entamoeba histolytica HM-1:IMSS
Length = 316
Score = 105 bits (253), Expect = 7e-22
Identities = 62/181 (34%), Positives = 102/181 (56%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSGVER 272
K++P+ KL + E L N+ Q + PHL+I+G +G+G+ T M L+E+YGS V
Sbjct: 10 KYQPRSFAKLCHWTETTELLYNISQNGNPPHLVIHGTNGSGRYTCCMLFLKEIYGSVVLE 69
Query: 273 LRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQ 452
L QE +++ EI+ S +H+E NP+ G+ DR+ + ++ + ++ S
Sbjct: 70 LGQEKYEI----DEEHEIVLKVSPFHVEFNPSQYGLRDRITLQFIIDKM----KVGS--- 118
Query: 453 REFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPA 632
+ K +I++E D LTK+AQ A+RR ME R + I +IS ++ +RSRCL I +
Sbjct: 119 -QQKTLIIHEADKLTKEAQFAVRRAME--TGNWRYVFITENISAMMKPLRSRCLDIRIEL 175
Query: 633 P 635
P
Sbjct: 176 P 176
>UniRef50_A7PUS7 Cluster: Chromosome chr4 scaffold_32, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr4 scaffold_32, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 588
Score = 104 bits (250), Expect = 2e-21
Identities = 60/192 (31%), Positives = 98/192 (51%), Gaps = 8/192 (4%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYG-- 257
W DKHRP L HK++A LK LV PH+L GPSG+GKK M LLRE+YG
Sbjct: 277 WADKHRPASLNGFTLHKQEAQLLKQLVSSDICPHVLFKGPSGSGKKALTMALLREIYGDA 336
Query: 258 ----SGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQ 425
S + ++T ++ + SS +H+E+N ++ + R +M +VK +
Sbjct: 337 SWNVSCPTEVSKKTAKILEKRPMQVVVPLTSSAHHVELN-VNLEPYARHALMAIVKQIRS 395
Query: 426 THQI--DSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAI 599
+I + V++L EVD ++ Q+ ++ M+ Y C+LI+ V+ ++
Sbjct: 396 NCEITPEHGSILLISVLVLYEVDKAAENIQYLIKWIMDCYTDACQLIMCCEDDVDVLESV 455
Query: 600 RSRCLTISVPAP 635
++RC I + AP
Sbjct: 456 KNRCKVIKLEAP 467
>UniRef50_A4IBL6 Cluster: Replication factor C, subunit 3, putative;
n=6; Trypanosomatidae|Rep: Replication factor C, subunit
3, putative - Leishmania infantum
Length = 364
Score = 102 bits (245), Expect = 7e-21
Identities = 54/176 (30%), Positives = 92/176 (52%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RP L + H++ L++L+ + PHLL+YGP G GK T + LYG
Sbjct: 19 WVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKACAYYLYGK- 77
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
+R+R + ++ I+++ + + I ++ + + T
Sbjct: 78 -DRVRANVLEMNASDDRGIDVVRQQTREFASTSS----------IFSMMGSGSSTGGGSG 126
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
+FK+VIL+E D ++ DAQ ALRR +EKY R ++ N I+++IPA++SRC
Sbjct: 127 GPAAKFKLVILDEADQMSHDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRC 182
>UniRef50_Q9XI09 Cluster: F8K7.11 protein; n=11; Eukaryota|Rep:
F8K7.11 protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 319
Score = 101 bits (242), Expect = 2e-20
Identities = 61/177 (34%), Positives = 91/177 (51%), Gaps = 1/177 (0%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVR-LKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGS 260
WV+K+RPK + + H+E+ VR L N +Q +D PH+L YGP G GK T + + +L+G
Sbjct: 11 WVEKYRPKQVKDVA-HQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFG- 68
Query: 261 GVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQID 440
P K ++ ++++ +N I D + V H+
Sbjct: 69 --------------PELYKSRVLELNASDDRGINVVRTKIKDFAAVA-----VGSNHRQS 109
Query: 441 SNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
FK++IL+E D +T+DAQ+ALRRTME Y R I N ISR+I + SRC
Sbjct: 110 GYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 166
>UniRef50_Q0UV64 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 411
Score = 100 bits (240), Expect = 3e-20
Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 3/183 (1%)
Frame = +3
Query: 72 KMSLWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLREL 251
++ WV+K+RPK L ++ L +Q S+ PH+L YGP G GK + ++ L ++L
Sbjct: 31 RLQPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQL 90
Query: 252 YGSGVERLRQETMNFTTPSNKKIEIMTVS--SNYHIEVNPTDVGIHDRVVIMDLVKNVAQ 425
YG + + R +N + I V + + V PT V+ D A+
Sbjct: 91 YGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTY-----NVMTEDKDGGEAK 145
Query: 426 THQI-DSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIR 602
+ D FK+++L+E D +T+DAQ ALRRTME Y R L+ N ++R+I +
Sbjct: 146 MVRYRDKYSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLA 205
Query: 603 SRC 611
SRC
Sbjct: 206 SRC 208
>UniRef50_P34429 Cluster: Putative replication factor C subunit 5;
n=2; Caenorhabditis|Rep: Putative replication factor C
subunit 5 - Caenorhabditis elegans
Length = 368
Score = 99 bits (238), Expect = 5e-20
Identities = 61/176 (34%), Positives = 89/176 (50%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RP L +L H++ L ++ PHLL YGP G GK T V+ R++Y
Sbjct: 31 WVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMY--- 87
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
S K+ M + N E DV + + +V K + +
Sbjct: 88 --------------SPTKMASMVLELNASDE-RGIDV-VRNTIVNFAQTKGLQAFSTSSN 131
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
G FK+VIL+E D +TKDAQ+ALRR +EKY R +I N ++ ++PAI+SRC
Sbjct: 132 TGTVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRC 187
>UniRef50_Q64AI6 Cluster: Replication factor C subunit; n=1;
uncultured archaeon GZfos31B6|Rep: Replication factor C
subunit - uncultured archaeon GZfos31B6
Length = 416
Score = 99.1 bits (236), Expect = 8e-20
Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 2/182 (1%)
Frame = +3
Query: 81 LWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGS 260
+W +K+RP + H+ LK+LV+ ++ PHL++YG GK + V L R LYG
Sbjct: 76 IWTEKYRPHTFEDIVGHEHIVANLKHLVESNNLPHLVLYGAKNTGKMSAVFVLARALYGE 135
Query: 261 GVERLRQ--ETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQ 434
E + NF K + VS + TD + ++ + K V +
Sbjct: 136 QWENNLAIFDASNFFDRGKKYL----VSDPRFARLIGTDDPKKIQKTVISVFKQVINEYA 191
Query: 435 IDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCL 614
+ +F+++ ++ + L+ DAQHALRR MEK+ TCR IL + R+IPA+RSR L
Sbjct: 192 GMAALDSDFRMIFIDSAEALSMDAQHALRRIMEKHSRTCRFILSTTHLPRLIPALRSRGL 251
Query: 615 TI 620
+
Sbjct: 252 NL 253
>UniRef50_Q9UXF5 Cluster: Replication factor C small subunit; n=18;
Thermoprotei|Rep: Replication factor C small subunit -
Sulfolobus solfataricus
Length = 330
Score = 99.1 bits (236), Expect = 8e-20
Identities = 68/176 (38%), Positives = 92/176 (52%)
Frame = +3
Query: 81 LWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGS 260
LW +K+RPK L + +E RLK V++ + PHLL GP G GK T + L+ +LYG
Sbjct: 9 LWAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGD 68
Query: 261 GVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQID 440
N+T Y +E+N +D D VI + VK A+T
Sbjct: 69 ----------NYT--------------EYFLELNASDERGID--VIRNKVKEFARTV--- 99
Query: 441 SNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSR 608
G FKVV+L+E D++T DAQ ALRRTME Y R IL N +S++I I+SR
Sbjct: 100 IPGDIPFKVVLLDEADNMTADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSR 155
>UniRef50_Q8PVY4 Cluster: Replication factor C small subunit; n=13;
cellular organisms|Rep: Replication factor C small
subunit - Methanosarcina mazei (Methanosarcina frisia)
Length = 338
Score = 98.3 bits (234), Expect = 1e-19
Identities = 66/180 (36%), Positives = 96/180 (53%)
Frame = +3
Query: 72 KMSLWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLREL 251
K +W++K+RP L ++ +E RL + V + PHLL GP G GK + + RE+
Sbjct: 11 KEEIWIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREI 70
Query: 252 YGSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTH 431
+G E L +E NFT E+N +D D ++ + +KN A+T
Sbjct: 71 FG---EDLWRE--NFT------------------ELNASDERGID--IVRNKIKNFAKTA 105
Query: 432 QIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
+ G FK++ L+E D LT DAQ ALRRTMEK+ + CR IL N S++I I+SRC
Sbjct: 106 PM---GGAPFKIIFLDEADALTSDAQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRC 162
>UniRef50_P35249 Cluster: Replication factor C subunit 4; n=34;
Eukaryota|Rep: Replication factor C subunit 4 - Homo
sapiens (Human)
Length = 363
Score = 97.5 bits (232), Expect = 2e-19
Identities = 67/181 (37%), Positives = 95/181 (52%), Gaps = 5/181 (2%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RPK + ++ + +E LK ++ +D P+LL YGP G GK + ++ REL+G
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDV-GIHDRVVIMDLVKNVAQTHQID 440
+ RLR +E+N +D GI V+ + VKN AQ
Sbjct: 100 LFRLRV-----------------------LELNASDERGIQ---VVREKVKNFAQLTVSG 133
Query: 441 SNGQRE----FKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSR 608
S + FK+VIL+E D +T AQ ALRRTMEK T R LI N +SR+I + SR
Sbjct: 134 SRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSR 193
Query: 609 C 611
C
Sbjct: 194 C 194
>UniRef50_Q5CVS5 Cluster: Replication factor C like AAA ATpase; n=2;
Cryptosporidium|Rep: Replication factor C like AAA
ATpase - Cryptosporidium parvum Iowa II
Length = 335
Score = 97.1 bits (231), Expect = 3e-19
Identities = 58/178 (32%), Positives = 95/178 (53%)
Frame = +3
Query: 78 SLWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYG 257
+LWV+K+RP +++ + +HK+ L ++++ + PHLL +GP G GK + V+ L REL+G
Sbjct: 7 NLWVEKYRPGNVLDISHHKDVVSMLSHVLKNGNMPHLLFHGPPGTGKTSAVLALSRELFG 66
Query: 258 SGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQI 437
+ N+ +E + S I V + R V+ +TH+I
Sbjct: 67 PNEYK------------NRILE-LNASDERGISVVRDKIKSWTRQVV-----QCNKTHEI 108
Query: 438 DSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
N +K+VIL+E + +T DAQ ALRR +E R ++I N IS++I + SRC
Sbjct: 109 TGNLLPSWKIVILDEAEMMTADAQSALRRIIEVSSKNTRFVIICNYISKIIEPLASRC 166
>UniRef50_P40348 Cluster: Replication factor C subunit 2; n=7;
Saccharomycetales|Rep: Replication factor C subunit 2 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 353
Score = 97.1 bits (231), Expect = 3e-19
Identities = 57/176 (32%), Positives = 89/176 (50%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RPK+L ++ LK ++ ++ PH+L YGP G GK + ++ L +ELYG
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
+ + R +N S I + V R+ + K H +++
Sbjct: 87 LMKSRILELN-------------ASDERGISIVREKVKNFARLTVSKPSK-----HDLEN 128
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
+K++IL+E D +T DAQ ALRRTME Y R LI N ++R+I + SRC
Sbjct: 129 YPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRC 184
>UniRef50_Q01F45 Cluster: Rfc5 replication factor C subunit 5
(36kDa), probable; n=2; Ostreococcus|Rep: Rfc5
replication factor C subunit 5 (36kDa), probable -
Ostreococcus tauri
Length = 341
Score = 96.3 bits (229), Expect = 6e-19
Identities = 67/191 (35%), Positives = 95/191 (49%), Gaps = 1/191 (0%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
W +K+RP +L ++ H+ ++ PHLL +GP G GK + V+ L RELY S
Sbjct: 17 WTEKYRPLNLSEVVAHETIIDVIRKFAANGRLPHLLFHGPPGTGKTSTVLALTRELYESN 76
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDV-GIHDRVVIMDLVKNVAQTHQID 440
SN +E+N +D GI+ ++ D +++ A T +
Sbjct: 77 ------------------------HSNMVLELNASDSRGIN---IVRDEIQSFASTARPF 109
Query: 441 SNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTI 620
S+ FK+VI++E D LTKDAQ ALRR MEKY R LI N S++IPAI+SRC
Sbjct: 110 SSA---FKLVIMDECDSLTKDAQFALRRIMEKYAQHTRFCLICNYASKIIPAIQSRCTKF 166
Query: 621 SVPAPPXNLKL 653
P L
Sbjct: 167 RFAPVPAEAML 177
>UniRef50_A0RYC0 Cluster: Replication factor C small subunit; n=1;
Cenarchaeum symbiosum|Rep: Replication factor C small
subunit - Cenarchaeum symbiosum
Length = 311
Score = 66.5 bits (155), Expect(2) = 7e-19
Identities = 35/97 (36%), Positives = 55/97 (56%)
Frame = +3
Query: 348 HIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRT 527
HI+ N ++ D I + V + + + FK++IL+E D++T DAQ ALRRT
Sbjct: 62 HIQDNLLELNASDERGIGMVRDKVKRFSNFAAFEEIPFKIIILDEADEMTADAQTALRRT 121
Query: 528 MEKYVATCRLILIANSISRVIPAIRSRCLTISVPAPP 638
+E CR I++AN+IS++I I+SRC + P
Sbjct: 122 IEDASKICRFIIVANNISKIIDPIQSRCAVYKFTSIP 158
Score = 50.0 bits (114), Expect(2) = 7e-19
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +3
Query: 81 LWVDKHRPKDLMKLDYHKEQAVRLKNLVQQS-DFPHLLIYGPSGAGKKTRVMCLLRELYG 257
+WV+K+RPK L + KE ++ L++ + + PHLL G +G GK T +C+ R++ G
Sbjct: 1 MWVEKYRPKKLADVVDQKEIIGSIEALLKNAGEMPHLLFSGSAGVGKTTTALCIARQVLG 60
Query: 258 SGVE 269
++
Sbjct: 61 PHIQ 64
>UniRef50_P38629 Cluster: Replication factor C subunit 3; n=15;
Dikarya|Rep: Replication factor C subunit 3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 340
Score = 95.9 bits (228), Expect = 7e-19
Identities = 61/176 (34%), Positives = 93/176 (52%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RP+ L ++ E ++ V + PHLL YGP G GK + ++ L RE+YG
Sbjct: 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK- 73
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
N+ SN +E+N +D D V+ + +K+ A T QI S
Sbjct: 74 ---------NY--------------SNMVLELNASDDRGID--VVRNQIKDFASTRQIFS 108
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
G FK++IL+E D +T AQ+ALRR +E+Y R ++AN ++ PA+ SRC
Sbjct: 109 KG---FKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRC 161
>UniRef50_UPI000049A58F Cluster: activator 1 36 kda subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: activator 1 36 kda
subunit - Entamoeba histolytica HM-1:IMSS
Length = 325
Score = 95.5 bits (227), Expect = 1e-18
Identities = 64/180 (35%), Positives = 93/180 (51%), Gaps = 1/180 (0%)
Frame = +3
Query: 75 MSL-WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLREL 251
MSL WV+K+RP + H+ LK + + PH+L YGP G GK T + ++++L
Sbjct: 1 MSLPWVEKYRPSTTDGIFGHEYILESLKQFINANQIPHMLFYGPPGTGKTTTALAIVKQL 60
Query: 252 YGSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTH 431
G T S +E+N +D D V+ D +K+ A T
Sbjct: 61 CG------------------------TKFSALVLELNASDERGID--VVRDQIKSFASTR 94
Query: 432 QIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
+ +N K +IL+E D LTKDAQ+ALRRT+E++ A CR I I N + + PAI+SRC
Sbjct: 95 TLYTNCT---KFIILDESDKLTKDAQNALRRTLEQFSANCRFIFICNEVHLITPAIQSRC 151
>UniRef50_Q5K796 Cluster: DNA replication factor, putative; n=5;
Fungi/Metazoa group|Rep: DNA replication factor,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 373
Score = 95.5 bits (227), Expect = 1e-18
Identities = 60/176 (34%), Positives = 95/176 (53%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RP L + HK+ ++ ++ PHLL+YGP G GK + V+ L R LYG
Sbjct: 56 WVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYG-- 113
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
P+ +K + +E+N +D D V+ + +KN A T + S
Sbjct: 114 -------------PAYRK---------HILELNASDDRGID--VVREQIKNFAMTKVLFS 149
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
G FK+VIL+E D +T+ AQ ALRR +E++ R ++ N ++++ PAI+SRC
Sbjct: 150 KG---FKLVILDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRC 202
>UniRef50_Q8TUC8 Cluster: Replication factor C subunit; n=4;
Methanosarcinaceae|Rep: Replication factor C subunit -
Methanosarcina acetivorans
Length = 344
Score = 95.5 bits (227), Expect = 1e-18
Identities = 62/191 (32%), Positives = 95/191 (49%), Gaps = 2/191 (1%)
Frame = +3
Query: 81 LWVDKHRPKDLMKLDYHKEQAVR-LKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYG 257
LW K+R + L + E AVR L L+Q PHL+ YGP +GK T + L RELYG
Sbjct: 7 LWTLKYRAETLEGM-LGNEHAVRTLSELLQSGTLPHLIFYGPENSGKTTASLALARELYG 65
Query: 258 SGVERLRQETMNFTTPSN-KKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQ 434
E + + F + + V + + TD ++D+ K V +
Sbjct: 66 ---ETWKNNFVYFNASDFFDQGKRYLVRDKRFVRILGTDDPKKIYKSVIDIFKEVVNEYA 122
Query: 435 IDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCL 614
++ ++K++ ++ + L+ DAQHALRR MEKY +TCR IL S++I +RSR L
Sbjct: 123 GMASIDADYKIIYIDNAESLSSDAQHALRRIMEKYSSTCRFILSTTRPSKLISPLRSRGL 182
Query: 615 TISVPAPPXNL 647
+ P +L
Sbjct: 183 QVFFAYVPDSL 193
>UniRef50_Q2UJ68 Cluster: Replication factor C; n=15;
Pezizomycotina|Rep: Replication factor C - Aspergillus
oryzae
Length = 398
Score = 95.1 bits (226), Expect = 1e-18
Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 3/179 (1%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RP L + H++ + V + PHLL+YGP G GK + ++ L R +YGS
Sbjct: 45 WVEKYRPNTLDDVSGHQDILATINRFVDANRLPHLLLYGPPGTGKTSTILALARRIYGS- 103
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNV-AQTHQID 440
+ +RQ + ++ I++ + +++ K + + Q
Sbjct: 104 -KNMRQMVLELNASDDRGIDV-----------------VREQIKTFASTKQIFSMAPQPT 145
Query: 441 SNGQ--REFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
S G +K++IL+E D +T AQ ALRR MEKY A R +IAN ++ PA+ SRC
Sbjct: 146 SGGSSLASYKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRC 204
>UniRef50_Q9GR09 Cluster: Replication factor C3; n=9;
Aconoidasida|Rep: Replication factor C3 - Plasmodium
falciparum
Length = 344
Score = 94.7 bits (225), Expect = 2e-18
Identities = 58/182 (31%), Positives = 102/182 (56%), Gaps = 2/182 (1%)
Frame = +3
Query: 72 KMSLWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLREL 251
+++ WV+K+RP L + H++ +K VQ+ + PHLL++GP G GK + ++ + +EL
Sbjct: 11 ELTPWVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKEL 70
Query: 252 YGSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDV-GIHDRVVIMDLVKNVAQT 428
YG +K+ S++ +E+N +D GI+ VI D +K A++
Sbjct: 71 YG-----------------DKR-------SSFVLELNASDDRGIN---VIRDQIKTFAES 103
Query: 429 HQIDSNGQRE-FKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRS 605
+ ++ K++IL+E D +T AQ+A+RR ME Y R L+ N ++++ PAI+S
Sbjct: 104 KNHYTTCEKTTLKLIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQS 163
Query: 606 RC 611
RC
Sbjct: 164 RC 165
>UniRef50_P40937 Cluster: Replication factor C subunit 5; n=51;
Eukaryota|Rep: Replication factor C subunit 5 - Homo
sapiens (Human)
Length = 340
Score = 93.9 bits (223), Expect = 3e-18
Identities = 59/176 (33%), Positives = 94/176 (53%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RP+ L L H++ ++ + + PHLL+YGP G GK + ++ ++LY
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLY--- 78
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
+K+ M +E+N +D D +I + + A T I
Sbjct: 79 --------------KDKEFGSMV------LELNASDDRGID--IIRGPILSFASTRTIFK 116
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
G FK+VIL+E D +T+DAQ+ALRR +EK+ R LI N +S++IPA++SRC
Sbjct: 117 KG---FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRC 169
>UniRef50_P53016 Cluster: Replication factor C subunit 4; n=2;
Caenorhabditis|Rep: Replication factor C subunit 4 -
Caenorhabditis elegans
Length = 334
Score = 93.9 bits (223), Expect = 3e-18
Identities = 58/195 (29%), Positives = 94/195 (48%), Gaps = 1/195 (0%)
Frame = +3
Query: 72 KMSLWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLREL 251
K+ W +K+RPK L + Y E LK +Q D PHLL YGP G GK + + R+L
Sbjct: 13 KVLTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQL 72
Query: 252 YGSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKN-VAQT 428
+ + ++ + I ++ R I K+ + +
Sbjct: 73 FPKNI--FHDRVLDLNASDERGIAVV-------------------RQKIQSFSKSSLGHS 111
Query: 429 HQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSR 608
H+ D + K++IL+EVD +T++AQ A+RR +E + T R ILI N +SR+IP + SR
Sbjct: 112 HREDV---LKLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSR 168
Query: 609 CLTISVPAPPXNLKL 653
C + P +++
Sbjct: 169 CAKFRFKSLPAEIQV 183
>UniRef50_A5E7K0 Cluster: Activator 1 41 kDa subunit; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Activator 1
41 kDa subunit - Lodderomyces elongisporus (Yeast)
(Saccharomyces elongisporus)
Length = 402
Score = 93.5 bits (222), Expect = 4e-18
Identities = 57/177 (32%), Positives = 88/177 (49%), Gaps = 1/177 (0%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RPK+L + LK + + PH+L YGP G GK + ++ L ++LYG
Sbjct: 37 WVEKYRPKNLDDVASQDHAVKVLKKQISTGNLPHMLFYGPPGTGKTSTILALAKQLYGPN 96
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEV-NPTDVGIHDRVVIMDLVKNVAQTHQID 440
+ + R +N + I + + + V NPT+ D ++N
Sbjct: 97 LYKSRVLELNASDERGISIVRQKIKNFAKLTVSNPTE----------DDLRNYPCP---- 142
Query: 441 SNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
+K++IL+E D +T DAQ ALRRTME Y R L+ N I+R+I + SRC
Sbjct: 143 -----PYKIIILDEADSMTNDAQSALRRTMETYANITRFALVCNYITRIIDPLASRC 194
>UniRef50_Q5UZE5 Cluster: Replication factor C small subunit; n=5;
Halobacteriaceae|Rep: Replication factor C small subunit
- Haloarcula marismortui (Halobacterium marismortui)
Length = 325
Score = 93.1 bits (221), Expect = 5e-18
Identities = 62/177 (35%), Positives = 92/177 (51%)
Frame = +3
Query: 81 LWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGS 260
+W++K+RP+ L + H+ RLK+ V ++D H+L GP+G GK T + RELYG
Sbjct: 15 VWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGD 74
Query: 261 GVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQID 440
+ +E+N +D D V+ D +KN A+T
Sbjct: 75 DWRE------------------------HFLELNASDERGID--VVRDRIKNFART---- 104
Query: 441 SNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
S G E++++ L+E D LT DAQ ALRRTME++ R IL N S++I I+SRC
Sbjct: 105 SFGGVEYRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRC 161
>UniRef50_Q9GR07 Cluster: Replication factor C subunit 2; n=6;
Plasmodium|Rep: Replication factor C subunit 2 -
Plasmodium falciparum
Length = 330
Score = 91.5 bits (217), Expect = 2e-17
Identities = 56/189 (29%), Positives = 92/189 (48%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RPK L + + + LK +V+ + PHL+ +GP G GK + + L EL+G
Sbjct: 6 WVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGK- 64
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
E + + + ++ I ++ + ++ + IH K V +
Sbjct: 65 -ENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSET------KEVLPS----- 112
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTIS 623
+K+V+L+E D +T+DAQ ALRR +E Y R ILI N I ++ I SRC
Sbjct: 113 -----WKLVVLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYR 167
Query: 624 VPAPPXNLK 650
+ P N+K
Sbjct: 168 FQSIPINIK 176
>UniRef50_A2X8Q4 Cluster: Putative uncharacterized protein; n=2; Oryza
sativa|Rep: Putative uncharacterized protein - Oryza
sativa subsp. indica (Rice)
Length = 996
Score = 91.1 bits (216), Expect = 2e-17
Identities = 46/187 (24%), Positives = 97/187 (51%), Gaps = 3/187 (1%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
W DK+RP+ L H+EQ +LK LV PH++ GP G+GK + ++ E++G
Sbjct: 687 WADKYRPRTLGGFTCHREQIEQLKQLVSTEFCPHIIFKGPPGSGKSSLCRAVVTEIFGDS 746
Query: 264 VERLRQETMNFTTPSNKKIEIMT--VSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQ- 434
+ + + + + ++ SS++H+E+N + V+MDL + +
Sbjct: 747 SLNVSHYLKSCSGQGSTSMPVLVPLSSSDHHMELNLRYYSKNAGYVLMDLANEITNKKKT 806
Query: 435 IDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCL 614
D + +++FKV++L +VD +++ Q ++ ++ T ++++ S ++ +++SRC
Sbjct: 807 TDPSVRKKFKVIVLYDVDKVSESNQRLIKWMIDSSSDTHKILMTCQDESHILDSMKSRCK 866
Query: 615 TISVPAP 635
I + P
Sbjct: 867 LICIGVP 873
>UniRef50_Q4UIH2 Cluster: Replication factor C subunit (RPC2
homologue) , putative; n=3; Piroplasmida|Rep:
Replication factor C subunit (RPC2 homologue) , putative
- Theileria annulata
Length = 336
Score = 90.6 bits (215), Expect = 3e-17
Identities = 47/176 (26%), Positives = 95/176 (53%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RPK + + + + ++ +++ + PH++ +GP G GK + + + R++YG
Sbjct: 9 WVEKYRPKKISDVIFQTQAVSIMEQIIETFNMPHMIFHGPPGTGKTSAALAMARQIYG-- 66
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
+E +R+ + + I+++ + +N ++ ++ +T+++
Sbjct: 67 LEGMRERVLELNASDERGIDVVRDRIKTYTRINISNNRVNP------------ETNRVMP 114
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
N +K++IL+E D +T DAQ ALRR +E Y + R ILI N + ++I I SRC
Sbjct: 115 N----YKMIILDEADMITADAQAALRRVIENYSSISRFILICNYLHKIIGPIYSRC 166
>UniRef50_A7ATE5 Cluster: Replication factor C3 protein, putative;
n=1; Babesia bovis|Rep: Replication factor C3 protein,
putative - Babesia bovis
Length = 348
Score = 90.6 bits (215), Expect = 3e-17
Identities = 56/182 (30%), Positives = 84/182 (46%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RP+ + H + L N ++ PHLL +GP G GK + +M + R LYGS
Sbjct: 9 WVEKYRPESFSDIISHDDILSTLMNFAEKGQLPHLLFHGPPGTGKTSTIMAVSRYLYGS- 67
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
M + IE + E + T + + DS
Sbjct: 68 --HRHSYVMELNASDERGIETVREQIKTFAETSNT------------FSSGIVGS---DS 110
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTIS 623
+ K++IL+E D +T AQ++LRR ME Y + R LI N ++R+IP I+SRC
Sbjct: 111 GPRTNLKLIILDEADQMTNAAQNSLRRIMEIYSSNVRFCLICNFMNRIIPPIQSRCTGFR 170
Query: 624 VP 629
P
Sbjct: 171 FP 172
>UniRef50_A7DR59 Cluster: Replication factor C; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Replication factor C
- Candidatus Nitrosopumilus maritimus SCM1
Length = 316
Score = 90.6 bits (215), Expect = 3e-17
Identities = 61/187 (32%), Positives = 96/187 (51%), Gaps = 1/187 (0%)
Frame = +3
Query: 81 LWVDKHRPKDLMKLDYHKEQAVRLKNLVQQ-SDFPHLLIYGPSGAGKKTRVMCLLRELYG 257
+WV+K+RP L ++ E L+ L++ +D PHLL G +G GK T +C+ R++ G
Sbjct: 6 MWVEKYRPMKLSEVVNQTEIIGSLEALIKDPTDMPHLLFSGSAGVGKTTTALCISRQILG 65
Query: 258 SGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQI 437
+ +Y +E+N +D +R + M + + V + +
Sbjct: 66 D------------------------YAKDYTLELNASD----ERGIGM-VREKVKKFSRY 96
Query: 438 DSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLT 617
FK++IL+E D++T DAQ ALRR +E CR ILIAN+IS++I I+SRC T
Sbjct: 97 AGMADVPFKIIILDEADEMTSDAQTALRRIIEDTAKICRFILIANNISKIIDPIQSRCAT 156
Query: 618 ISVPAPP 638
A P
Sbjct: 157 FKFTAVP 163
>UniRef50_A0CAF3 Cluster: Chromosome undetermined scaffold_161,
whole genome shotgun sequence; n=2;
Oligohymenophorea|Rep: Chromosome undetermined
scaffold_161, whole genome shotgun sequence - Paramecium
tetraurelia
Length = 340
Score = 89.8 bits (213), Expect = 5e-17
Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 2/178 (1%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
W++K+RP L ++ H+E +K +++ P+LL+YGP G GK + ++ L +++Y
Sbjct: 17 WIEKYRPSTLDEVISHEEIVATIKKFNEKNRLPNLLLYGPPGTGKTSTIIALAKQIY--- 73
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDV-GIHD-RVVIMDLVKNVAQTHQI 437
NK +++ +E+N +D GI+ R I ++ + T
Sbjct: 74 --------------QNKYNQMV-------LELNASDERGINTVRETIKGFAESQSFTFTK 112
Query: 438 DSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
D N K+VIL+E D +T AQ ALRR +EKY T R I N IS++IPAI+SRC
Sbjct: 113 DKN--TSIKLVILDEADAMTAAAQFALRRIIEKYAKTTRFCFICNHISQIIPAIQSRC 168
>UniRef50_Q5CUE4 Cluster: Replication factor RFC3 AAA+ ATpase; n=2;
Cryptosporidium|Rep: Replication factor RFC3 AAA+ ATpase
- Cryptosporidium parvum Iowa II
Length = 383
Score = 89.4 bits (212), Expect = 7e-17
Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 4/180 (2%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RP L L HK+ ++ + PHLL +GP G GK + + + + +Y
Sbjct: 14 WVEKYRPSGLQDLLSHKDIINTIEKFISSGQLPHLLFHGPPGTGKTSTIHAISKCIYK-- 71
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVV--IMDLVKNVAQTHQI 437
+R Q + ++ I ++ + E T + I D+ + T +
Sbjct: 72 -DRKYQMVLELNASDDRGINVVRDAIKSFSESASTTLNHSGGTNSNIEDIEMSDVSTRNL 130
Query: 438 DSNGQ--REFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
D N K++IL+E D +T AQ ALRR ME+Y R +I N ++++ PA++SRC
Sbjct: 131 DCNKSLCENIKLIILDEADMMTSTAQMALRRIMERYSEHVRFCIICNYVNKITPALQSRC 190
>UniRef50_Q86EA0 Cluster: Clone ZZD636 mRNA sequence; n=2;
Bilateria|Rep: Clone ZZD636 mRNA sequence - Schistosoma
japonicum (Blood fluke)
Length = 364
Score = 88.6 bits (210), Expect = 1e-16
Identities = 58/176 (32%), Positives = 86/176 (48%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RPK + ++ Y E L+ + SD P+LL YGP G GK + ++ L R+L+G
Sbjct: 27 WVEKYRPKTIDEVAYQTEVVSVLRRCIGGSDLPNLLFYGPPGTGKTSLILALARQLFG-- 84
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
S + +E + S I V V V + N + +
Sbjct: 85 -----------PLYSERVLE-LNASDERGIVVIREKVKAFAHVAVSSSGSNTNSSGSSST 132
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
N +K++IL+E D +T AQ ALRRTME + T R L N ++R+I I SRC
Sbjct: 133 N-IPPYKLIILDEADSMTAPAQAALRRTMETEMRTTRFCLTCNYVTRIIEPITSRC 187
>UniRef50_Q7QUZ0 Cluster: GLP_61_35037_36092; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_61_35037_36092 - Giardia lamblia
ATCC 50803
Length = 351
Score = 88.6 bits (210), Expect = 1e-16
Identities = 61/189 (32%), Positives = 93/189 (49%), Gaps = 1/189 (0%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRL-KNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGS 260
W +KHRP L ++ H++ AVR K ++ + PH+L+YGP+G GK T + ++ E +G
Sbjct: 5 WTEKHRPLLLDRI-MHQDHAVRAAKRCIESGNMPHMLLYGPAGTGKTTLIHAMMHEFFGP 63
Query: 261 GVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQID 440
R R N +T KI + S + V D VK V
Sbjct: 64 RFWRARVSEFNASTDRGIKIVRERIKSIARTVI----------AVAPDDVKAVYPC---- 109
Query: 441 SNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTI 620
+F+V+IL+E D LT+++Q ALRR +E + T R +I N S++I I SRC
Sbjct: 110 ----PDFQVIILDEADALTRESQAALRRIIEDFSETTRFCIICNYPSQIIAPIVSRCARF 165
Query: 621 SVPAPPXNL 647
+ + P L
Sbjct: 166 AFSSLPRPL 174
>UniRef50_Q2FUA8 Cluster: Replication factor C subunit; n=1;
Methanospirillum hungatei JF-1|Rep: Replication factor C
subunit - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 331
Score = 87.8 bits (208), Expect = 2e-16
Identities = 54/179 (30%), Positives = 86/179 (48%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
W++K+RP ++ + L+ + PHL++ GP G GK V LRELYG
Sbjct: 3 WIEKYRPVTFDQILGQERVCEVLRRCAATKNLPHLVVSGPPGTGKSAAVEVTLRELYGDT 62
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
+ T+ T+ ++ + S + + +D ++ + A I++
Sbjct: 63 WQD--NVTIFRTSDLMERGKYALESDERFLHLYRSDESFLSN--FKHIISSYASIRPINA 118
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTI 620
EFKV++ + L+ D QHALRRTME+Y TCR I S +IP I+SRCL +
Sbjct: 119 ----EFKVMLFEDAHALSHDIQHALRRTMERYSNTCRFIFCTTQASTLIPPIKSRCLPL 173
>UniRef50_UPI0000DB75B4 Cluster: PREDICTED: similar to CG8142-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to CG8142-PA
- Apis mellifera
Length = 310
Score = 87.0 bits (206), Expect = 3e-16
Identities = 54/176 (30%), Positives = 87/176 (49%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RPK++ + E L+ ++ DFP+LL YGP G GK + ++ R+L+GS
Sbjct: 34 WVEKYRPKNVEDVVEQTEVVEVLRQCLKGGDFPNLLFYGPPGTGKTSTILAAARQLFGS- 92
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
++ + + I+++ ++ T G+ D D
Sbjct: 93 --LYKERVLELNASDERGIQVVREKIKSFAQL--TAGGMRD-----------------DG 131
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
FK+++L+E D +T AQ ALRRTMEK + R LI N +SR+I + SRC
Sbjct: 132 KSCPPFKIIVLDEADSMTGAAQAALRRTMEKESHSTRFCLICNYVSRIIEPLTSRC 187
>UniRef50_Q5UP47 Cluster: Putative replication factor C small
subunit L499; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit L499 -
Mimivirus
Length = 344
Score = 87.0 bits (206), Expect = 3e-16
Identities = 53/177 (29%), Positives = 93/177 (52%), Gaps = 1/177 (0%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RP+++ + +++ + LK ++ PHLL +GPSG+GK + + C RE+YG
Sbjct: 19 WVEKYRPQEIDHIISNRDIILSLKKFIESRTLPHLLFFGPSGSGKTSTIKCCAREIYGKY 78
Query: 264 VERLRQETMNFTTPSNKKIE-IMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQID 440
+ + + + + IE + T N+ V + + V+++
Sbjct: 79 INYM---ILELNASNERGIETVRTKIKNF--------VSSKSSIFLPMGVRDI------- 120
Query: 441 SNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
FK+VIL+E+D +T +AQ LR+T+EK T R LI N I ++ A++SRC
Sbjct: 121 ------FKLVILDEIDSMTVEAQGMLRQTIEKNSGTTRFCLICNDIDKINIALQSRC 171
>UniRef50_A7SA25 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 401
Score = 86.6 bits (205), Expect = 5e-16
Identities = 57/176 (32%), Positives = 88/176 (50%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RP L ++ ++E RL+ QQ + P+++I GP G GK T ++CL R L G
Sbjct: 55 WVEKYRPTKLHEIVGNEETVSRLEVFAQQGNVPNIIIAGPPGTGKTTSILCLARALLGVS 114
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
L+ + +++ I+ V+ + +K AQ
Sbjct: 115 ---LKDAVLELNASNDRGID-----------------------VVRNKIKMFAQQKVTLP 148
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
G+ K++IL+E D +T AQ ALRRTME Y T R L N+ ++I AI+SRC
Sbjct: 149 KGRH--KIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNTSDKIIEAIQSRC 202
>UniRef50_A3CUW4 Cluster: Replication factor C; n=2;
Methanomicrobiales|Rep: Replication factor C -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 336
Score = 86.6 bits (205), Expect = 5e-16
Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 3/183 (1%)
Frame = +3
Query: 81 LWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGS 260
LW + +RP+ + E L PH+LI GP G GK V CL + LYG
Sbjct: 2 LWSEVYRPRRCDDIIGQDEVVRHLTAFSDSGSVPHMLISGPHGTGKTAAVECLAKRLYG- 60
Query: 261 GVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMD---LVKNVAQTH 431
E + T F+ + ++ + + DR +I++ +VK A
Sbjct: 61 --ENWKANTTVFSATDLLGRGRSALETDERFSM----IYRKDRSLIVNFKQIVKWYASMR 114
Query: 432 QIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
+D+ +FK+++ + LT +AQ ALRRTME+Y ATCR I + S +IPAI SRC
Sbjct: 115 PLDA----DFKLMVFEDAHGLTFEAQQALRRTMERYSATCRFIFVTVRPSAIIPAIASRC 170
Query: 612 LTI 620
L +
Sbjct: 171 LPL 173
>UniRef50_UPI0000498FA9 Cluster: activator 1 subunit; n=1; Entamoeba
histolytica HM-1:IMSS|Rep: activator 1 subunit -
Entamoeba histolytica HM-1:IMSS
Length = 329
Score = 86.2 bits (204), Expect = 6e-16
Identities = 60/189 (31%), Positives = 94/189 (49%), Gaps = 1/189 (0%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
W +K+RPK L + +E+ ++L S P+LL +GP G+GK T ++ + EL+
Sbjct: 7 WSEKYRPKTLDDVQ-GQEEVIKLLKSSLNSGLPNLLFFGPPGSGKTTSILAVAHELFQG- 64
Query: 264 VERLRQETMNFTTPSNKKIEIM-TVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQID 440
++ + + + IE++ T NY ++ DV TH
Sbjct: 65 --YFKERVLELNASNQRGIEMVRTTLKNYAMQ----DV-----------------THY-- 99
Query: 441 SNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTI 620
+G ++K++IL+E D LT DAQ ALRR ME + R LI N ISR++P I SRC+
Sbjct: 100 -DGTPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKF 158
Query: 621 SVPAPPXNL 647
A P +
Sbjct: 159 RFSALPKEI 167
>UniRef50_Q7T2C9 Cluster: Rfc4 protein; n=34; Fungi/Metazoa
group|Rep: Rfc4 protein - Danio rerio (Zebrafish)
(Brachydanio rerio)
Length = 202
Score = 86.2 bits (204), Expect = 6e-16
Identities = 58/181 (32%), Positives = 88/181 (48%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RPK + ++ + +E LK ++ +D P+LL YGP G GK + ++ RELYG
Sbjct: 35 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGP- 93
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
+ RQ + + I+++ ++ VA T D
Sbjct: 94 -DLYRQRVLELNASDERGIQVVREKVKRFAQL------------------TVAGTRP-DG 133
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTIS 623
FK++IL+E D +T AQ ALRRTMEK T R LI N +SR+ A + +S
Sbjct: 134 KTCPPFKIIILDEADSMTSAAQAALRRTMEKESRTTRFCLICNYVSRLSHAEGAAFFPMS 193
Query: 624 V 626
V
Sbjct: 194 V 194
>UniRef50_Q977Z9 Cluster: Replication factor C small subunit; n=4;
Thermoplasmatales|Rep: Replication factor C small
subunit - Thermoplasma volcanium
Length = 318
Score = 86.2 bits (204), Expect = 6e-16
Identities = 59/182 (32%), Positives = 93/182 (51%)
Frame = +3
Query: 75 MSLWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELY 254
+ +W +K+RPK L ++ E +LK+ V++ + PHLL G G GK + + L EL+
Sbjct: 2 IEIWTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELF 61
Query: 255 GSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQ 434
G + NF IE+N ++ D VI + +K++A+
Sbjct: 62 GESWKE------NF------------------IEMNASNENGID--VIRNKIKDIARIRP 95
Query: 435 IDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCL 614
+ G FK++ L+E D LT +AQ ALRRTME Y T R + N S++IP I+SR +
Sbjct: 96 SNPLG---FKILFLDEADQLTAEAQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRTV 152
Query: 615 TI 620
+
Sbjct: 153 VM 154
>UniRef50_Q8QNA5 Cluster: EsV-1-182; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-182 - Ectocarpus siliculosus virus 1
Length = 326
Score = 85.8 bits (203), Expect = 8e-16
Identities = 61/181 (33%), Positives = 88/181 (48%), Gaps = 2/181 (1%)
Frame = +3
Query: 75 MSLWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELY 254
M WV+K+RP+ + + +H L + D PHLL +GP G GK + ++ L R L
Sbjct: 1 MQPWVEKYRPRRVRDVVHHDHLKRVLNGAEKTGDLPHLLFHGPPGTGKTSTILALARTLL 60
Query: 255 GSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQ 434
G G R R +E+N +D D V+ D +K ++
Sbjct: 61 GEGNMRERV-----------------------LELNASDERGLD--VVRDKIKTFSKM-S 94
Query: 435 IDS--NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSR 608
I S G FK+VIL+E D +T DAQ ALRRTME + R L+ N +S++I + SR
Sbjct: 95 ISSFQPGCPPFKLVILDEADTMTADAQSALRRTMETHSVVTRFCLVCNYVSKIIAPLASR 154
Query: 609 C 611
C
Sbjct: 155 C 155
>UniRef50_Q245Y3 Cluster: ATPase, AAA family protein; n=2;
Oligohymenophorea|Rep: ATPase, AAA family protein -
Tetrahymena thermophila SB210
Length = 373
Score = 85.0 bits (201), Expect = 1e-15
Identities = 54/189 (28%), Positives = 98/189 (51%), Gaps = 5/189 (2%)
Frame = +3
Query: 63 IN*KMSLWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLL 242
+N + WV+K+RP + ++ Y +E L+ ++ + PHL+++GP G GK + ++
Sbjct: 37 LNNNLLPWVEKYRPNKIEEVSYQEEVIKSLQGVLLSGNLPHLILHGPPGTGKTSSILAFA 96
Query: 243 RELYGSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVA 422
++LYG P+ K I+ ++++ D GI ++ D +K A
Sbjct: 97 KQLYG---------------PTFYKERILELNAS-------DDRGIQ---IVRDKIKKFA 131
Query: 423 QTHQIDSNGQR-----EFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRV 587
Q + N + FK++IL+E D +T +AQ ALRR +E +T R +I N I+++
Sbjct: 132 Q-QVVSKNPDKSFKCPNFKIIILDEADSMTTEAQSALRRIIEDTSSTTRFCIICNYITKI 190
Query: 588 IPAIRSRCL 614
I + SRC+
Sbjct: 191 IEPLGSRCV 199
>UniRef50_A4I6D8 Cluster: Replication factor C, subunit 4, putative;
n=4; Trypanosomatidae|Rep: Replication factor C, subunit
4, putative - Leishmania infantum
Length = 360
Score = 84.6 bits (200), Expect = 2e-15
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 14/193 (7%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RP+ + + + E RL+ + ++ + P+LL+ GP G GK T ++CL R+L
Sbjct: 8 WVEKYRPQTVADIVGNTEAISRLQVIAKEGNLPNLLLCGPPGTGKTTSMLCLARDL---- 63
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQI-- 437
L Q T + ++ + + +E+N +D D V+ + +K AQT +
Sbjct: 64 ---LLQSTDTGSAGASPGGATKDILKDAVLELNASDDRGLD--VVREKIKLFAQTKKTLP 118
Query: 438 ------------DSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSIS 581
D + K+V+L+E D +T AQ ALRRTME + +T R N+ S
Sbjct: 119 RKFFSTGEGVAKDDHVVHLHKIVLLDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSS 178
Query: 582 RVIPAIRSRCLTI 620
R+I I+SRC +
Sbjct: 179 RIIEPIQSRCAVV 191
>UniRef50_Q4WW89 Cluster: Replication factor C subunit; n=1;
Aspergillus fumigatus|Rep: Replication factor C subunit
- Aspergillus fumigatus (Sartorya fumigata)
Length = 389
Score = 84.6 bits (200), Expect = 2e-15
Identities = 54/182 (29%), Positives = 86/182 (47%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
W DK+RP L ++ E LK+ + FPHLL +GP G GK + ++ L R+LYG
Sbjct: 21 WQDKYRPATLKQVVGQDETLSVLKSFMIHRKFPHLLFHGPPGTGKTSTILALARQLYGDA 80
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
+ Q + ++ + + + P +V + + N+
Sbjct: 81 --DMSQMVLELNASDDRSVHDVQIRIKAFASTRPIF-----KVPLRESPYNM-------- 125
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTIS 623
FK+VIL+E D + AQ ALRR +E Y A R +I N+I +++PA+ SRC +
Sbjct: 126 -----FKLVILDEADTMDHTAQMALRRIIEDYAAFTRFCIITNNIHKLLPALISRCARLR 180
Query: 624 VP 629
P
Sbjct: 181 FP 182
>UniRef50_Q8SQM0 Cluster: REPLICATION FACTOR C (ACTIVATOR 1) 37kDa
SUBUNIT; n=2; Microsporidia|Rep: REPLICATION FACTOR C
(ACTIVATOR 1) 37kDa SUBUNIT - Encephalitozoon cuniculi
Length = 309
Score = 59.3 bits (137), Expect(2) = 8e-15
Identities = 34/87 (39%), Positives = 50/87 (57%)
Frame = +3
Query: 351 IEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTM 530
+E+N +D D V +K+ AQ D EFK++IL+E D +T AQ A+RR M
Sbjct: 67 LELNASDERGIDTV--RTTIKSFAQRRVKDC----EFKIIILDEADSMTTTAQQAMRRVM 120
Query: 531 EKYVATCRLILIANSISRVIPAIRSRC 611
E + + CR ILI N +++ I+SRC
Sbjct: 121 EIHSSECRFILICNVFTKIFEPIQSRC 147
Score = 43.6 bits (98), Expect(2) = 8e-15
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = +3
Query: 75 MSLWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELY 254
M L V+K++P ++ + ++ + +++ D PHLL GP G GK T L R L
Sbjct: 1 MDLLVNKYQPSEIQDIVGNEATMELVSLMIESRDMPHLLFTGPPGTGKTTCAKILARRLL 60
Query: 255 GS 260
G+
Sbjct: 61 GN 62
>UniRef50_Q4Q732 Cluster: Replication factor C, subunit 2, putative;
n=6; Trypanosomatidae|Rep: Replication factor C, subunit
2, putative - Leishmania major
Length = 354
Score = 82.2 bits (194), Expect = 1e-14
Identities = 55/177 (31%), Positives = 86/177 (48%), Gaps = 1/177 (0%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQ-SDFPHLLIYGPSGAGKKTRVMCLLRELYGS 260
WV+K+RP+ L +++ E L+ +++ ++ PH L +GP G GK T ++ + EL+G
Sbjct: 27 WVEKYRPRTLAEVEAQDEAVGALRACLKEGANMPHFLFHGPPGTGKTTSILAVAHELFGP 86
Query: 261 GVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQID 440
R R +N S + I V V I + + +V Q+
Sbjct: 87 DYIRSRVRELN-------------ASDDRGISVVREKVKIFAQGAVSSSGSSVTQSDG-K 132
Query: 441 SNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
FK++IL+E D L DAQ ALRR ME + R ++ N +SR+I I SRC
Sbjct: 133 VYPVPPFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRC 189
>UniRef50_A2SRY4 Cluster: DNA polymerase III gamma/tau subunits-like
protein; n=1; Methanocorpusculum labreanum Z|Rep: DNA
polymerase III gamma/tau subunits-like protein -
Methanocorpusculum labreanum (strain ATCC 43576 / DSM
4855 / Z)
Length = 332
Score = 82.2 bits (194), Expect = 1e-14
Identities = 51/181 (28%), Positives = 85/181 (46%), Gaps = 1/181 (0%)
Frame = +3
Query: 81 LWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGS 260
LW++K+RP ++ +L + PHLL+ G SG GK + + R Y
Sbjct: 2 LWIEKYRPTSFEEVIGQNSPVKQLSAYAALGNLPHLLVIGRSGCGKSSALEVFSRRFY-- 59
Query: 261 GVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDR-VVIMDLVKNVAQTHQI 437
E + T P + +M + + N ++ + ++ K + + H
Sbjct: 60 -TESAAENTT--VLP----VSVMFSQGHTYFAENDRFAHLYQKNKSVLANFKYIVRWHAS 112
Query: 438 DSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLT 617
F+++I + DLTKDAQ ALRR ME+Y TCR I + +S++ +I IRSRC+
Sbjct: 113 LKPLSAPFRLIIFDGAGDLTKDAQAALRRIMEQYSQTCRFIFVTSSLASIIDPIRSRCVP 172
Query: 618 I 620
+
Sbjct: 173 L 173
>UniRef50_P35250 Cluster: Replication factor C subunit 2; n=103;
Eukaryota|Rep: Replication factor C subunit 2 - Homo
sapiens (Human)
Length = 354
Score = 82.2 bits (194), Expect = 1e-14
Identities = 58/179 (32%), Positives = 90/179 (50%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RP L ++ +++ RL+ ++ + P+++I GP G GK T ++CL R L G
Sbjct: 38 WVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLG-- 95
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
P+ K + +SN D GI V+ + +K AQ
Sbjct: 96 -------------PALKDAMLELNASN--------DRGID---VVRNKIKMFAQQKVTLP 131
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTI 620
G+ K++IL+E D +T AQ ALRRTME Y T R L N+ ++I I+SRC +
Sbjct: 132 KGRH--KIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVL 188
>UniRef50_Q5UQ72 Cluster: Putative replication factor C small
subunit L510; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit L510 -
Mimivirus
Length = 363
Score = 78.6 bits (185), Expect = 1e-13
Identities = 45/179 (25%), Positives = 83/179 (46%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
W++K+RPK L + + KN ++ + H L YGP G GK + ++ + RE++
Sbjct: 9 WIEKYRPKKLEDITQSQNLLDLFKNSTKKGEMTHFLFYGPPGTGKTSAILAMGREIFK-- 66
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
E + + F ++ I + + ++ + D +I
Sbjct: 67 -EHFQNRVIEFNASDDRGINAVREKITNEAKKYVAEIKLEDGTIIPS------------- 112
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTI 620
+K++IL+E D +T +AQ ALR +E+Y R I N I+++ AI+SRC ++
Sbjct: 113 -----YKIIILDEADSMTDEAQDALRVIIEQYSTATRFCFICNYITKITDAIKSRCSSV 166
>UniRef50_A2E6V9 Cluster: ATPase, AAA family protein; n=2;
Trichomonas vaginalis G3|Rep: ATPase, AAA family protein
- Trichomonas vaginalis G3
Length = 325
Score = 78.2 bits (184), Expect = 2e-13
Identities = 54/176 (30%), Positives = 84/176 (47%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RPK+L + +E LK ++ D PHL+ +GP G GK + + L R L+G
Sbjct: 10 WVEKYRPKNLDDIVQQEEAVKALKTTLETGDLPHLIFHGPPGTGKTSLALALCRSLFGDD 69
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
RLR + +N + I+ + S + + I ++VI+D
Sbjct: 70 F-RLRVKELN--ASDERGIDAVRSSIKEFASLAVPNGKIPFKIVILD------------- 113
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
E D +T AQ+ALRR +E Y + R I+I N +S++I I SRC
Sbjct: 114 ------------EADSMTSAAQNALRRIIETYSSVTRFIIICNYVSKIIDPILSRC 157
>UniRef50_A0EG83 Cluster: Chromosome undetermined scaffold_95, whole
genome shotgun sequence; n=2; Oligohymenophorea|Rep:
Chromosome undetermined scaffold_95, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 384
Score = 78.2 bits (184), Expect = 2e-13
Identities = 48/177 (27%), Positives = 89/177 (50%)
Frame = +3
Query: 81 LWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGS 260
+W++K+RPK L ++ + + +L+ + + + P++++ GP G GK + V+CL R++ G
Sbjct: 6 IWLEKYRPKTLDEVHGNSDIVDKLRAIAKMGNLPNIILVGPPGIGKTSSVLCLARQILG- 64
Query: 261 GVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQID 440
+ +++ + ++ IE + + +K AQ
Sbjct: 65 --DSIKESVLELNASDDRGIE-----------------------TVREQIKGFAQKKVNL 99
Query: 441 SNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
GQ K+VIL+E D LT+ AQ ALR + Y + R +L N +++I AI+SRC
Sbjct: 100 QEGQH--KIVILDEADSLTEGAQQALRMIISDYSTSTRFVLSCNDSTKLIDAIQSRC 154
>UniRef50_Q8WSL8 Cluster: Replication factor C subunit 4; n=6;
Plasmodium|Rep: Replication factor C subunit 4 -
Plasmodium falciparum
Length = 336
Score = 77.8 bits (183), Expect = 2e-13
Identities = 57/183 (31%), Positives = 96/183 (52%), Gaps = 1/183 (0%)
Frame = +3
Query: 75 MSLWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELY 254
+ +W++K+RP+ L ++ + LK+++ + P+LL+ G G GK T ++CL E+
Sbjct: 15 IDIWIEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGTGKTTSILCLASEML 74
Query: 255 GSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDV-GIHDRVVIMDLVKNVAQTH 431
G+ + K + +E+N +D GI+ VI D +K+ A+
Sbjct: 75 GN--------------QAKKAV----------LELNASDDRGIN---VIRDRIKSFAK-- 105
Query: 432 QIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
+I S + K++IL+EVD +T AQ +LRR ME Y T R L N ++I A++SRC
Sbjct: 106 EIISLPPGKHKIIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRC 165
Query: 612 LTI 620
I
Sbjct: 166 AII 168
>UniRef50_A2DS36 Cluster: ATPase, AAA family protein; n=1;
Trichomonas vaginalis G3|Rep: ATPase, AAA family protein
- Trichomonas vaginalis G3
Length = 325
Score = 77.4 bits (182), Expect = 3e-13
Identities = 55/176 (31%), Positives = 88/176 (50%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RP L + H+ +K + ++ PHL +GP G GK T + + +LYG+
Sbjct: 9 WVEKYRPSKLDDVVSHEACISTIKKFIDKNCLPHLCFHGPPGTGKTTTAIAISHQLYGND 68
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
M+V +E+N +D D V + +K+ A + +
Sbjct: 69 TS-------------------MSV-----LELNASDERGIDTVRMR--IKDFASSRSLFG 102
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
+ K++IL+E D +T AQ ALRR ME++ + R ILI N ++IPA+RSRC
Sbjct: 103 P---KIKLIILDESDAMTGAAQAALRRIMEQFTSNVRFILICNYPEKLIPALRSRC 155
>UniRef50_Q7R657 Cluster: GLP_574_161256_160291; n=1; Giardia
lamblia ATCC 50803|Rep: GLP_574_161256_160291 - Giardia
lamblia ATCC 50803
Length = 321
Score = 76.6 bits (180), Expect = 5e-13
Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 4/188 (2%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RP + H+ ++ L+++ PH++ YG G GK T + L+ EL+G
Sbjct: 4 WVEKYRPSTTEGVVSHELIIAAIRALIREGRLPHMIFYGKPGTGKTTLIKALMNELFGDA 63
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQI-- 437
V S + +E+N +D D VI VK + +
Sbjct: 64 V------------------------STHVLELNASDDSGVD--VIRQTVKGFVTSGSVLS 97
Query: 438 -DSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCL 614
S+ +FK+VI++E D ++ AQ +LRR ME + R L+ N +++PAI SRC
Sbjct: 98 QQSSSATKFKIVIMDECDHMSSVAQASLRRLMETSIKHARFCLLCNYPEKLLPAILSRCC 157
Query: 615 TIS-VPAP 635
+P P
Sbjct: 158 AFRFLPVP 165
>UniRef50_Q8SSI2 Cluster: DNA REPLICATION FACTOR C (ACTIVATOR 1)
SUBUNIT; n=1; Encephalitozoon cuniculi|Rep: DNA
REPLICATION FACTOR C (ACTIVATOR 1) SUBUNIT -
Encephalitozoon cuniculi
Length = 305
Score = 54.8 bits (126), Expect(2) = 3e-12
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Frame = +3
Query: 351 IEVNPTDV-GIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRT 527
+E+N +D GI + + +K A T+ + K+VIL+E D +++DAQ+ALRR
Sbjct: 66 LELNASDERGI---ATVRETIKEFASTYS------KTMKLVILDEADMMSRDAQNALRRI 116
Query: 528 MEKYVATCRLILIANSISRVIPAIRSRC 611
+E + A R LIAN + ++I I SRC
Sbjct: 117 IEDFSANTRFCLIANHLRKIISPILSRC 144
Score = 39.5 bits (88), Expect(2) = 3e-12
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +3
Query: 90 DKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSGVE 269
+K+RP L+++ ++E L+++ P++L YGP G GK T + + L + V
Sbjct: 7 EKYRPGSLLEVVGNREVVSSLQSISSAGRIPNMLFYGPPGTGKTTSIRAIANNLPRTSVL 66
Query: 270 RL 275
L
Sbjct: 67 EL 68
>UniRef50_Q2NH89 Cluster: Replication factor C small subunit; n=2;
Methanobacteriaceae|Rep: Replication factor C small
subunit - Methanosphaera stadtmanae (strain DSM 3091)
Length = 321
Score = 74.1 bits (174), Expect = 3e-12
Identities = 56/176 (31%), Positives = 89/176 (50%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RP+ L + ++ RLK V++ P+++ G +G GK T + L + L G
Sbjct: 5 WVEKYRPQTLDDVVGQEQIVGRLKRYVEEKSLPNIMFTGFAGVGKTTCALALAKSLLG-- 62
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
E +Q NF +E+N +D D V + +K+ + + +
Sbjct: 63 -EYWQQ---NF------------------LELNASDARGIDTV--RNEIKSFCKLKAVGA 98
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
F+++ L+EVD++TKDAQ ALRR ME Y T IL N S++I I+SRC
Sbjct: 99 ----PFRIIFLDEVDNMTKDAQQALRREMEMYTKTSSFILSCNYSSKIIDPIQSRC 150
>UniRef50_A6R5J4 Cluster: Activator 1 subunit 3; n=1; Ajellomyces
capsulatus NAm1|Rep: Activator 1 subunit 3 - Ajellomyces
capsulatus NAm1
Length = 366
Score = 72.1 bits (169), Expect = 1e-11
Identities = 56/175 (32%), Positives = 83/175 (47%)
Frame = +3
Query: 87 VDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSGV 266
V+K+RP L + L Q PHLL+YGP G GK + ++ L R +YG V
Sbjct: 74 VEKYRPNTLEDAVPNAPNIDWTNPLFVQR-LPHLLLYGPPGTGKTSTILALARRIYG--V 130
Query: 267 ERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSN 446
+ +RQ + E+N +D DR + + ++ + +
Sbjct: 131 KNMRQMVL---------------------ELNASD----DRGIDVFVIHPFRYSLSNSES 165
Query: 447 GQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
FK++IL+E D +T AQ ALRR MEKY A R +IAN ++ PA+ SRC
Sbjct: 166 TLGAFKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRC 220
>UniRef50_Q8TZC4 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) [Contains:
Mkn RFC intein]; n=1; Methanopyrus kandleri|Rep:
Replication factor C small subunit (RFC small subunit)
(Clamp loader small subunit) [Contains: Mkn RFC intein]
- Methanopyrus kandleri
Length = 635
Score = 69.7 bits (163), Expect = 6e-11
Identities = 49/147 (33%), Positives = 70/147 (47%), Gaps = 5/147 (3%)
Frame = +3
Query: 213 GKKTRVMCLLRELYGSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRV 392
G R +LR L S V ++ E ++ ++ +V N V +H+
Sbjct: 331 GDARRAYRMLRTLVRSDVHAVKVEDLDVMDYDGYVYDV-SVPGNEMFFAGEVPVLLHNSD 389
Query: 393 -----VIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRL 557
VI VKN A+T + G FK++ L+E D+LT+D+Q ALRR ME Y CR
Sbjct: 390 ERGIDVIRTKVKNFARTRPM---GGARFKIIFLDEADNLTRDSQQALRRIMEMYSDACRF 446
Query: 558 ILIANSISRVIPAIRSRCLTISVPAPP 638
IL AN S +I I+SRC+ P
Sbjct: 447 ILAANYSSAIIDPIQSRCVVFKFTKLP 473
Score = 59.3 bits (137), Expect = 8e-08
Identities = 27/58 (46%), Positives = 35/58 (60%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYG 257
WV+K+RPK L + + RLK V + D P+LL GP G GK T +CL REL+G
Sbjct: 13 WVEKYRPKRLDDIVDQEHVVERLKAYVNRGDMPNLLFAGPPGTGKTTAALCLARELFG 70
>UniRef50_UPI0000499C0F Cluster: Activator 1 40 kDa subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: Activator 1 40 kDa
subunit - Entamoeba histolytica HM-1:IMSS
Length = 315
Score = 68.1 bits (159), Expect = 2e-10
Identities = 53/180 (29%), Positives = 84/180 (46%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RPK L ++ + + LK+ FPHLL+ G G GK T + CL EL
Sbjct: 9 WVEKYRPKLLDEIIGNVDIIKTLKSFRDSKQFPHLLLCGQPGIGKTTSIHCLAHELL--- 65
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
+R + + + IE + + E ++V+ D N+ +
Sbjct: 66 KDRYKDAVLELNASDERGIETIRSTIKSFCE---------KKLVLPD---NLPK------ 107
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTIS 623
+VIL+E D +T A ALRRTME + T R +L N+ ++I I+SRC ++
Sbjct: 108 -------IVILDEADSMTTAAFQALRRTMEIHSKTTRFVLACNTPEKIIEPIQSRCARLT 160
>UniRef50_Q8QKY2 Cluster: EsV-1-87; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-87 - Ectocarpus siliculosus virus 1
Length = 324
Score = 67.7 bits (158), Expect = 2e-10
Identities = 55/177 (31%), Positives = 84/177 (47%), Gaps = 1/177 (0%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLV-QQSDFPHLLIYGPSGAGKKTRVMCLLRELYGS 260
WV+K+RP ++ +K+ L NL ++ PHLLI GPSG GK V L
Sbjct: 6 WVEKYRPLCFSEVVGNKKSISLLSNLAAKRVSIPHLLICGPSGCGKTVCVDILC------ 59
Query: 261 GVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQID 440
N P N+ ++ +SS + GI + + VKN A+
Sbjct: 60 ----------NTMIPENRGARMLRLSSF-------DERGIDN---VRTTVKNFARGRVGT 99
Query: 441 SNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
K+V+L+E D +T A ALRR M+ Y +T R I++ N+ +++I I+SRC
Sbjct: 100 EPTPTIAKIVVLDEADSMTPGAFQALRRIMDVYSSTTRFIIVCNNSTKIIEPIQSRC 156
>UniRef50_O57852 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) [Contains:
Pho RFC intein]; n=8; Euryarchaeota|Rep: Replication
factor C small subunit (RFC small subunit) (Clamp loader
small subunit) [Contains: Pho RFC intein] - Pyrococcus
horikoshii
Length = 855
Score = 66.1 bits (154), Expect = 7e-10
Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Frame = +3
Query: 351 IEVNPTDV-GIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRT 527
+E+N +D GI+ VI + VK A+T I G FK++ L+E D LT+DAQ ALRRT
Sbjct: 607 LELNASDERGIN---VIREKVKEFARTKPI---GGASFKIIFLDEADALTQDAQQALRRT 660
Query: 528 MEKYVATCRLILIANSISRVIPAIRSRC 611
ME + + R IL N S++I I+SRC
Sbjct: 661 MEMFSSNVRFILSCNYSSKIIEPIQSRC 688
Score = 43.2 bits (97), Expect = 0.006
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGK 218
WV+K+RP+ L ++ + RLK+ V+ PHLL GP G GK
Sbjct: 17 WVEKYRPQRLDEIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGK 61
>UniRef50_Q8QN66 Cluster: EsV-1-224; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-224 - Ectocarpus siliculosus virus 1
Length = 324
Score = 64.5 bits (150), Expect = 2e-09
Identities = 47/183 (25%), Positives = 77/183 (42%)
Frame = +3
Query: 75 MSLWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELY 254
M W +KHRP L + + L++ P+++++GP G+GK + ++ + + +
Sbjct: 1 MVSWTEKHRPTRLQDVSGNDHVIRALQSFTSMETTPNMILHGPPGSGKTSSIISMAKSFF 60
Query: 255 GSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQ 434
G I IMT+ N + +G + D + +
Sbjct: 61 G-----------------RTNISIMTLELNAG---DSRSIG-----TMRDQIHFFTRCSS 95
Query: 435 IDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCL 614
+ K+VIL+E D LT AQ ALR +E R L N ISR+ +RSRC
Sbjct: 96 VTDRSTNALKLVILDEADGLTSCAQRALRHLIETTSGRARFCLCCNYISRLSSGLRSRCT 155
Query: 615 TIS 623
+ S
Sbjct: 156 SFS 158
>UniRef50_A5YSV5 Cluster: Replication factor C small subunit II;
n=4; Halobacteriaceae|Rep: Replication factor C small
subunit II - uncultured haloarchaeon
Length = 375
Score = 63.7 bits (148), Expect = 4e-09
Identities = 54/197 (27%), Positives = 87/197 (44%), Gaps = 12/197 (6%)
Frame = +3
Query: 81 LWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFP-HLLIYGPSGAGKKTRVMCLLRELYG 257
LW+++H P L +L QA L Q +D P +L+I GP G GK V +E++
Sbjct: 6 LWIERHAPA-LTELP----QASARDRLTQITDEPMNLIIQGPPGVGKTAAVRAFTQEVHT 60
Query: 258 S-GVERLRQETMNFTTPSNKKI----------EIMTVSSNYHIEVNPTDVGIHDRVVIMD 404
+ + +F S K+I + T S + N + D D
Sbjct: 61 DPDADLIEINVADFFNRSKKQIREDPRFERFLQGQTAFSKQYRRGNKGNKYKRDWSK-RD 119
Query: 405 LVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISR 584
++ +V Q +K V+L+ + + +D Q ALRR ME+Y + I+ +
Sbjct: 120 MISHVMQELASYQPASGTYKTVLLDNAETIREDFQQALRRVMERYHKNTQFIIATRQPTT 179
Query: 585 VIPAIRSRCLTISVPAP 635
+IP IRSRC + + AP
Sbjct: 180 LIPPIRSRCFPVPIRAP 196
>UniRef50_UPI0000E4A8C8 Cluster: PREDICTED: similar to replication
factor C subunit RFC5; n=2; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to replication factor
C subunit RFC5 - Strongylocentrotus purpuratus
Length = 292
Score = 62.5 bits (145), Expect = 9e-09
Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 1/149 (0%)
Frame = +3
Query: 81 LW-VDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYG 257
+W V+K+RP L L H E ++ ++Q PHLL YGP G GK + ++ + ++LY
Sbjct: 1 MWLVEKYRPNSLDDLISHTEIINTIQKFIKQDRLPHLLFYGPPGTGKTSTILAVAKQLY- 59
Query: 258 SGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQI 437
+ K+ M + N D GI ++ + N A T I
Sbjct: 60 ----------------APKEFNSMVLELN-----ASDDRGIG---IVRGSILNFASTRTI 95
Query: 438 DSNGQREFKVVILNEVDDLTKDAQHALRR 524
+G FK+VIL+E D +T DAQ+ALRR
Sbjct: 96 FKSG---FKLVILDEADAMTNDAQNALRR 121
>UniRef50_Q8G0U2 Cluster: DNA polymerase III, delta prime subunit
domain protein; n=6; Brucellaceae|Rep: DNA polymerase
III, delta prime subunit domain protein - Brucella suis
Length = 360
Score = 62.5 bits (145), Expect = 9e-09
Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 7/172 (4%)
Frame = +3
Query: 129 HKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVERLRQETM---NF 296
H E A L + H L++ GP G GK T L + G ET+ +F
Sbjct: 29 HDEIARFLAQAYHEGRMHHALLFEGPQGIGKATLAFHLAGHMLSFGDRNEAPETLIAPDF 88
Query: 297 TTPSNKKIEIMTVSSNYHIEVNPTD--VGIHDRVVIMDLVKNVAQTHQIDSNGQ-REFKV 467
+ P ++I + HI P D G + ++ ++ V TH + +++
Sbjct: 89 SKPLWRQIAGGMHPAVLHI-TRPFDQKTGKFRTAITVEEIRRV--THFLTRTASDHAWRI 145
Query: 468 VILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTIS 623
VI++ DD+ ++A +AL +T+E+ A ILI++S R++P IRSRC +IS
Sbjct: 146 VIVDPADDMNRNAANALLKTLEEPPARALFILISHSSGRLLPTIRSRCQSIS 197
>UniRef50_Q5UZL1 Cluster: Replication factor C small subunit; n=2;
Halobacteriaceae|Rep: Replication factor C small subunit
- Haloarcula marismortui (Halobacterium marismortui)
Length = 335
Score = 62.5 bits (145), Expect = 9e-09
Identities = 49/185 (26%), Positives = 83/185 (44%)
Frame = +3
Query: 81 LWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGS 260
LW + H P +L + K + L+ +++ +LL++GP G+GK V RE++ +
Sbjct: 5 LWTETHAP-ELSDIRQPKARE-HLQGAIEEP--MNLLVHGPKGSGKTAAVRAFAREVHEN 60
Query: 261 GVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQID 440
+ M KK E+ SN + D DL+ +V +
Sbjct: 61 PDADFTELNMADVFGMTKK-EV----SNDPRFASFIDSKRRRESSKADLINHVLKESASY 115
Query: 441 SNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTI 620
S +K ++L+ + + +D Q ALRR ME+Y + ++ S VIP IRSRC +
Sbjct: 116 SPVSGSYKTILLDNAEGMREDFQQALRRVMEQYYEATQFVIATRQPSAVIPPIRSRCFPV 175
Query: 621 SVPAP 635
+ P
Sbjct: 176 VMREP 180
>UniRef50_Q9A7A2 Cluster: DNA polymerase III, delta prime subunit;
n=3; Caulobacter|Rep: DNA polymerase III, delta prime
subunit - Caulobacter crescentus (Caulobacter
vibrioides)
Length = 336
Score = 61.7 bits (143), Expect = 1e-08
Identities = 45/181 (24%), Positives = 89/181 (49%), Gaps = 3/181 (1%)
Frame = +3
Query: 102 PKDLMKLDYHKEQAVRLKNLVQQSDFPHL-LIYGPSGAGKKTRVMCLLRELYGSGVERLR 278
P+D+ LD + +++ H L+ GP G GK T + R L G+ +
Sbjct: 8 PRDVYGLDGQSAAEAAFIDALERGRLHHAWLLTGPEGVGKATLAYRMARRLLGARPDP-- 65
Query: 279 QETMNFTTPSNKKIEIMTVSSNYHIEV--NPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQ 452
+ + PS+ + S+ + V TD G + + +D + + + +S
Sbjct: 66 SQGLLGAAPSDVVSRQVAARSHPDLMVLERLTDDGKARKSIPVDEARKLPEFFA-NSPAV 124
Query: 453 REFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPA 632
++V I++ DDL +A +A+ +T+E+ A ++LI+++ +++P IRSRC +++PA
Sbjct: 125 SPYRVAIIDAADDLNVNAANAVLKTLEEPPARGVILLISHAPGKLLPTIRSRCRRLAIPA 184
Query: 633 P 635
P
Sbjct: 185 P 185
>UniRef50_Q7QWA3 Cluster: GLP_177_25642_24674; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_177_25642_24674 - Giardia lamblia
ATCC 50803
Length = 322
Score = 60.5 bits (140), Expect = 3e-08
Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 1/189 (0%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
+++++RP+ L L + E RL+ Q + P++L G G GK T +CL ++ G
Sbjct: 6 FIERYRPRTLDGLIGNPEILARLRYFAAQGNLPNILFAGGPGLGKTTIALCLANQMLG-- 63
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
+++ + + ++++ E N +D+ VK AQ
Sbjct: 64 --------------AHRSVAFLELNASD--ERNVSDIRAK--------VKTFAQKQVTLP 99
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTIS 623
G + K+V L+E D +T+ AQ LRR M+ + R L N+IS+VI ++SRC +
Sbjct: 100 AGIQ--KLVFLDECDAMTEAAQQVLRRIMDDETGSTRFCLACNNISKVIEPVQSRCCVLR 157
Query: 624 V-PAPPXNL 647
+ PA L
Sbjct: 158 IMPATQAEL 166
>UniRef50_A6R3U6 Cluster: Activator 1 37 kDa subunit; n=1;
Ajellomyces capsulatus NAm1|Rep: Activator 1 37 kDa
subunit - Ajellomyces capsulatus NAm1
Length = 231
Score = 58.4 bits (135), Expect = 1e-07
Identities = 44/136 (32%), Positives = 63/136 (46%), Gaps = 6/136 (4%)
Frame = +3
Query: 180 PHLLIYGPSGAGKKTRVMCLLRELYGSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEV 359
PH+L YGP G GK + ++ L + LYG + R R +N + + I I+
Sbjct: 5 PHMLFYGPPGTGKTSTILALAKSLYGPQLYRSRILELNAS--DERGISIV---------- 52
Query: 360 NPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQRE------FKVVILNEVDDLTKDAQHALR 521
R I D + + + RE FK++IL+E D +T+DAQ ALR
Sbjct: 53 ---------REKIKDFARMQLSHPPLSDSAYREKYPCPPFKIIILDEADSMTQDAQSALR 103
Query: 522 RTMEKYVATCRLILIA 569
RTME+Y R L A
Sbjct: 104 RTMERYSRITRFCLSA 119
>UniRef50_Q2RZH6 Cluster: DNA polymerase III, subunits gamma and
tau, putative; n=1; Salinibacter ruber DSM 13855|Rep:
DNA polymerase III, subunits gamma and tau, putative -
Salinibacter ruber (strain DSM 13855)
Length = 728
Score = 56.0 bits (129), Expect = 7e-07
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 1/174 (0%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVE 269
K+RP ++ + LKN ++ H ++ GP G GK T L + + E
Sbjct: 12 KYRPSLFTEVVAQEHVTETLKNAIRMERLAHAYLFSGPRGVGKTTAARILAKAI---NCE 68
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
R+E + P + + + + V D +++V D ++ + + +I G
Sbjct: 69 TPREEREDGAEPCCECDSCESFEAGRSLNVFEMDAASNNKV---DDIRELREKVRIPPQG 125
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
++ KV IL+EV L+K A +AL +T+E+ A I +V+P I SRC
Sbjct: 126 DQK-KVYILDEVHMLSKQAFNALLKTLEEPPAHALFIFATTEPHKVLPTILSRC 178
>UniRef50_Q1YNM8 Cluster: DNA polymerase III, delta prime subunit
domain protein, putative; n=2; Aurantimonadaceae|Rep:
DNA polymerase III, delta prime subunit domain protein,
putative - Aurantimonas sp. SI85-9A1
Length = 352
Score = 56.0 bits (129), Expect = 7e-07
Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 4/168 (2%)
Frame = +3
Query: 129 HKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVER-LRQETMNFTT 302
H+ + L + H ++ GP G GK T R L + +
Sbjct: 30 HRREFAELASAEAAGRLHHAWLFQGPRGVGKATTAFAFARHLLSPAYAKGTEPPVFDPAD 89
Query: 303 PSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQI-DSNGQR-EFKVVIL 476
P+ ++I + T H+ P + G R I V+ V + ++ + G R +++ I+
Sbjct: 90 PAMRQIALGTYPGLVHVTRPPVEKGTGFRTQIT--VEGVRKLNRFFQATGSRTSWRIAII 147
Query: 477 NEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTI 620
+ DD+ + A +AL + +E+ A +++ ++ R++P IRSRC T+
Sbjct: 148 DPADDMNRSAANALLKILEEPPARSVFLIMNHTPGRLLPTIRSRCRTL 195
>UniRef50_A3ABV4 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 389
Score = 55.6 bits (128), Expect = 1e-06
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 10/83 (12%)
Frame = +3
Query: 393 VIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRR----------TMEKYV 542
V+ +++ A + ++ K+V+L+E D +TKDAQ ALRR +EK+
Sbjct: 105 VVRQQIQDFASARSLSFGAKQSVKMVLLDEADAMTKDAQFALRRATSSNLPHLTVIEKHT 164
Query: 543 ATCRLILIANSISRVIPAIRSRC 611
+ R LI N ++++IPA++SRC
Sbjct: 165 RSTRFALICNHVNKIIPALQSRC 187
Score = 50.8 bits (116), Expect = 3e-05
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYG-- 257
WV+K+RP+ L + H++ + L ++ PHLL+YGP G GK + L G
Sbjct: 40 WVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKHRQYWPLQGSCMGHN 99
Query: 258 -SGVERLRQETMNFTT 302
G++ +RQ+ +F +
Sbjct: 100 ERGIDVVRQQIQDFAS 115
Score = 50.8 bits (116), Expect = 3e-05
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 10/64 (15%)
Frame = +3
Query: 450 QREFKVVILNEVDDLTKDAQHALRRT----------MEKYVATCRLILIANSISRVIPAI 599
++ K+V+L+E D +TKDAQ ALRR +EK+ + R LI N ++++IPA+
Sbjct: 214 KQSVKMVLLDEADAMTKDAQFALRRATSSNLPHLTVIEKHTRSTRFALICNHVNKIIPAL 273
Query: 600 RSRC 611
+SRC
Sbjct: 274 QSRC 277
>UniRef50_Q58817 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) [Contains:
Mja RFC-1 intein; Mja RFC-2 intein; Mja RFC- 3 intein];
n=1; Methanocaldococcus jannaschii|Rep: Replication
factor C small subunit (RFC small subunit) (Clamp loader
small subunit) [Contains: Mja RFC-1 intein; Mja RFC-2
intein; Mja RFC- 3 intein] - Methanococcus jannaschii
Length = 1847
Score = 55.6 bits (128), Expect = 1e-06
Identities = 31/57 (54%), Positives = 37/57 (64%)
Frame = +3
Query: 393 VIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLIL 563
VI VK+ A+T I G FK++ L+E D LT DAQ+ALRRTMEKY CR IL
Sbjct: 1070 VIRTKVKDFARTKPI---GDVPFKIIFLDESDALTADAQNALRRTMEKYSDVCRFIL 1123
Score = 48.0 bits (109), Expect = 2e-04
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGK------KTRVMCLLR 245
WV+K+RPK L + E RLK V++ PHLL GP G GK K V +R
Sbjct: 9 WVEKYRPKTLDDIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKCLTGDTKVIVNGEIR 68
Query: 246 ELYGSGVERLRQETMNFTTPSNKKI 320
E+ G +E + T +N K+
Sbjct: 69 EI-GEVIEEISNGKFGVTLTNNLKV 92
>UniRef50_Q4TFR9 Cluster: Chromosome undetermined SCAF4252, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF4252,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 331
Score = 55.2 bits (127), Expect = 1e-06
Identities = 28/107 (26%), Positives = 58/107 (54%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RP L ++ ++E RL+ ++ + P+++I GP G GK T ++CL R L G+
Sbjct: 20 WVEKYRPLKLDQIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGAS 79
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMD 404
++ E +N + ++ I+++ + T +++I+D
Sbjct: 80 MKDAVLE-LNASNDRHRGIDVVRNKIKMFAQQKVTLPKGRHKIIILD 125
>UniRef50_P50531 Cluster: Checkpoint protein rad17; n=1;
Schizosaccharomyces pombe|Rep: Checkpoint protein rad17
- Schizosaccharomyces pombe (Fission yeast)
Length = 606
Score = 55.2 bits (127), Expect = 1e-06
Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 2/145 (1%)
Frame = +3
Query: 72 KMSLWVDKHRPKDLMKLDYHKEQAVRLKN--LVQQSDFPHLLIYGPSGAGKKTRVMCLLR 245
+ LW +K+ P+ L HK + +K L + LLI GPSG GK T V L +
Sbjct: 68 RFQLWFEKYIPQKAADLAVHKSKISAIKQWMLTDSLESRLLLICGPSGCGKSTAVQVLAK 127
Query: 246 ELYGSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQ 425
EL S +E L MN PSN++ + ++++ + ++ + + + +MD N Q
Sbjct: 128 ELGYSLIEWL--NPMNLKEPSNQESDTLSLTEKFSRFMSLCET--YPELELMD--SNNIQ 181
Query: 426 THQIDSNGQREFKVVILNEVDDLTK 500
++ G+++F + L+E+ L+K
Sbjct: 182 KRGKNAQGKKKF--IFLDEIPHLSK 204
>UniRef50_Q1NDV9 Cluster: DNA polymerase III delta prime subunit;
n=1; Sphingomonas sp. SKA58|Rep: DNA polymerase III
delta prime subunit - Sphingomonas sp. SKA58
Length = 322
Score = 54.8 bits (126), Expect = 2e-06
Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 5/173 (2%)
Frame = +3
Query: 129 HKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCL-LRELYGSGVERLRQETMNFTT 302
H+ QA L Q H I+ GP G GK + L LR L G+ + + +
Sbjct: 7 HEAQARMLLAQAQSGRMHHGWIFAGPKGIGKASFARALALRLLAGAAGPAIDGDGLAVPE 66
Query: 303 --PSNKKIEIMTVSSNYHIEVNPTDV-GIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVI 473
P + IE T +Y E+ P + G+ R + +D V+ + + Q + ++V+
Sbjct: 67 DHPIRRLIEA-TAHPDY-AELAPIEKDGVTARNISVDQVRGLQRLIQ-SAPSLSPRRIVV 123
Query: 474 LNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPA 632
++ DDL + A +AL +T+E+ + +L++++ R++P IRSRC T+ A
Sbjct: 124 VDSADDLERGAANALLKTLEEPPSDMLFLLVSHAPGRLLPTIRSRCRTLRFDA 176
>UniRef50_UPI0001554DFB Cluster: PREDICTED: similar to olfactory
receptor Olr396, partial; n=1; Ornithorhynchus
anatinus|Rep: PREDICTED: similar to olfactory receptor
Olr396, partial - Ornithorhynchus anatinus
Length = 208
Score = 54.4 bits (125), Expect = 2e-06
Identities = 25/79 (31%), Positives = 43/79 (54%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSGVER 272
+ RPK + ++ Y +E L+ ++ +D P+LL YGP G GK + ++ RELYG E
Sbjct: 115 RDRPKRVDEVAYQEEVVAVLRRSLEGADLPNLLFYGPPGTGKTSTILAAARELYGP--EL 172
Query: 273 LRQETMNFTTPSNKKIEIM 329
RQ + + I+++
Sbjct: 173 FRQRVLELNASDERGIQVV 191
>UniRef50_Q1YTP5 Cluster: DNA polymerase III, delta prime subunit;
n=1; gamma proteobacterium HTCC2207|Rep: DNA polymerase
III, delta prime subunit - gamma proteobacterium
HTCC2207
Length = 311
Score = 54.0 bits (124), Expect = 3e-06
Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 2/182 (1%)
Frame = +3
Query: 114 MKLDYHKEQAVRLKNLVQQSDFPH-LLIYGPSGAGKKTRVMCLLRELYGSGVERLRQETM 290
+ L +H++ L + + PH +LI G G GK L + L S E +
Sbjct: 4 LPLPWHEDAWASLNSSIDSGRLPHAVLISGDQGIGKLRLATALAQRLICSA------EMV 57
Query: 291 NFTTPSNKKIEIMTVSSNYHIE-VNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKV 467
+ + K + + S+ I + P + G + + +D V+ + ++ + Q +KV
Sbjct: 58 KYACGTCKTCNLFSAGSHPDITYLEPEEKG---KAIKIDPVRKLCESLSKTAQ-QGGWKV 113
Query: 468 VILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAPPXNL 647
I+ + + +A +AL + +E+ + LIL+++ SR+ IRSRC +S+P P ++
Sbjct: 114 AIIAPAEAMNINAANALLKNLEEPQSKTLLILVSHRPSRLSATIRSRCQKLSMPTPEADI 173
Query: 648 KL 653
L
Sbjct: 174 AL 175
>UniRef50_Q9AYK3 Cluster: Putative replication factor; n=3; Oryza
sativa|Rep: Putative replication factor - Oryza sativa
(Rice)
Length = 286
Score = 54.0 bits (124), Expect = 3e-06
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Frame = +3
Query: 81 LWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGS 260
+W DK+RP L +K+ A+ L N V + H++ GP+ GK++ V L+ + + +
Sbjct: 178 IWADKYRPNFLNDFICNKDAALELYNQVTAQECNHIIFEGPTSVGKRSMVSALIWDAFAT 237
Query: 261 GVERLRQETMNFTTPSN--KKIEIMTVSSNYHIE 356
++ ++T F K I+I S++H+E
Sbjct: 238 DNLKIEEQTKRFELKGEIAKHIDIRVKISSHHVE 271
>UniRef50_Q176Y6 Cluster: Replication factor C, 37kD-subunit,
putative; n=5; Eukaryota|Rep: Replication factor C,
37kD-subunit, putative - Aedes aegypti (Yellowfever
mosquito)
Length = 147
Score = 52.8 bits (121), Expect = 7e-06
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Frame = +3
Query: 72 KMSL-WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRE 248
K SL W++K+RP+ ++ +++ RL Q + P+++I GP G GK T ++CL R
Sbjct: 24 KKSLPWIEKYRPQKFEEIVGNEDTVSRLGVFATQGNAPNIIIAGPPGVGKTTTILCLARI 83
Query: 249 LYGSGVERLRQETMNFTTPSNKKIEIM 329
L G E R+ + + + I+++
Sbjct: 84 LLG---ENFREAVLELNASNERGIDVV 107
>UniRef50_Q9V2G4 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) (PabRFC
small subunit) [Contains: Pab RFC-1 intein; Pab RFC-2
intein]; n=2; Euryarchaeota|Rep: Replication factor C
small subunit (RFC small subunit) (Clamp loader small
subunit) (PabRFC small subunit) [Contains: Pab RFC-1
intein; Pab RFC-2 intein] - Pyrococcus abyssi
Length = 1437
Score = 52.4 bits (120), Expect = 9e-06
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Frame = +3
Query: 351 IEVNPTDV-GIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRT 527
+E+N +D GI+ VI + VK A+T I G FK++ L+E D LT+DAQ ALRRT
Sbjct: 581 LELNASDERGIN---VIREKVKEFARTKPI---GGASFKIIFLDEADALTQDAQQALRRT 634
Query: 528 MEKYVATCRLIL 563
ME + + R IL
Sbjct: 635 MEMFSSNVRFIL 646
Score = 44.0 bits (99), Expect = 0.003
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGK 218
WV+K+RP+ L ++ + RLK+ V+ PHLL GP G GK
Sbjct: 17 WVEKYRPQKLEEIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGK 61
>UniRef50_A7HJR0 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Fervidobacterium nodosum Rt17-B1|Rep: DNA
polymerase III, subunits gamma and tau -
Fervidobacterium nodosum Rt17-B1
Length = 517
Score = 51.6 bits (118), Expect = 2e-05
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 1/174 (0%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVE 269
K+RPK+ + + L N ++ H I+ GP G GK T L + L
Sbjct: 7 KYRPKNFYDIVGQEHIKKLLTNALKLQKINHAYIFAGPRGTGKTTTARILAKSL------ 60
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
E F P N+ + + H++V D + + + +K +
Sbjct: 61 --NCEKNQFGEPCNECTSCQAIDNGSHLDVIELDAASNRGIDEIRKIKEGVNFTPV---- 114
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
++KV I++EV LT++A +AL +T+E+ IL + ++ P I SRC
Sbjct: 115 MGKYKVYIIDEVHMLTREAFNALLKTLEEPPQHIVFILATTNPEKIPPTIMSRC 168
>UniRef50_Q6FZU9 Cluster: DNA polymerase III, delta prime subunit;
n=3; Bartonella|Rep: DNA polymerase III, delta prime
subunit - Bartonella quintana (Rochalimaea quintana)
Length = 351
Score = 51.2 bits (117), Expect = 2e-05
Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 5/164 (3%)
Frame = +3
Query: 150 LKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVERLRQETMNFTT----PSNK 314
L + Q+ H LI+ G G GK T L + S Q N T
Sbjct: 35 LAQMRQEGRLHHALIFEGEHGIGKATLAFHLAWNILSSQKGDFLQPESNSITWRQITQGS 94
Query: 315 KIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDL 494
++ +S + ++ GI I D++ + +T Q NG R +VI++ DD+
Sbjct: 95 HPCLLHISRRFDVKTQKFKTGILIDD-IRDIMHFLHKTSQ--DNGWR---IVIIDPADDM 148
Query: 495 TKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISV 626
+ A +A+ +T+E+ A I+I +S +++P IRSRC IS+
Sbjct: 149 NRSAANAILKTLEEPPAKTLFIIITHSSGKLLPTIRSRCQQISL 192
>UniRef50_Q0BT78 Cluster: DNA polymerase III, delta' subunit; n=2;
Acetobacteraceae|Rep: DNA polymerase III, delta' subunit
- Granulobacter bethesdensis (strain ATCC BAA-1260 /
CGDNIH1)
Length = 342
Score = 50.8 bits (116), Expect = 3e-05
Identities = 47/191 (24%), Positives = 88/191 (46%), Gaps = 14/191 (7%)
Frame = +3
Query: 102 PKDLMKLDYHKEQAVRLKNLVQQSDFPHL-LIYGPSGAGKKTRVMCLLRELY------GS 260
P+ +L H+ L + V+ H L+ GP+G GK T R L GS
Sbjct: 6 PRQTSRLYGHEAAEATLASSVRSGRLHHAWLLTGPAGIGKATLAYRFARWLLAGAPEGGS 65
Query: 261 GVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDR------VVIMDLVKNVA 422
+ ++ + +P + V+++ H ++ + G +R +++D V+ +A
Sbjct: 66 SQHEKKADSPLWLSPEHPVFR--RVAADTHADLLSIEAGWDERRKRQRTEIVVDDVREIA 123
Query: 423 Q-THQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAI 599
H + G ++VVI++ D L + A +AL + +E+ L+L +S R++P I
Sbjct: 124 SFLHLTPAEGG--WRVVIVDGADTLNRHAANALLKVLEEPPPRAILLLSCSSPGRLLPTI 181
Query: 600 RSRCLTISVPA 632
RSRC + + A
Sbjct: 182 RSRCRMLRLQA 192
>UniRef50_A1U0Y9 Cluster: DNA-directed DNA polymerase; n=3;
Marinobacter|Rep: DNA-directed DNA polymerase -
Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 /
VT8)(Marinobacter hydrocarbonoclasticus (strain DSM
11845))
Length = 343
Score = 50.8 bits (116), Expect = 3e-05
Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 1/157 (0%)
Frame = +3
Query: 168 QSDFPH-LLIYGPSGAGKKTRVMCLLRELYGSGVERLRQETMNFTTPSNKKIEIMTVSSN 344
Q PH LL+ G G GK+ + L L + ++ +++ +S+
Sbjct: 24 QDRLPHALLVVGEQGVGKRAWAEAVAGLLLCDQQVGL-DDGAPIACGQCRQCQLIAANSH 82
Query: 345 YHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRR 524
+ V + R+V +D ++ ++ T + S KV I++ D L +A +AL +
Sbjct: 83 PDVRVYSPE---KSRMVKVDQIRALS-TFAVASPQVAHRKVAIVDRADQLNINAANALLK 138
Query: 525 TMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAP 635
T+E+ + L+L+ S V+P IRSRC +++P P
Sbjct: 139 TLEEPLPDVTLLLLQESGRPVLPTIRSRCQALTIPLP 175
>UniRef50_Q4FLY1 Cluster: Probable DNA polymerase III; n=2;
Candidatus Pelagibacter ubique|Rep: Probable DNA
polymerase III - Pelagibacter ubique
Length = 310
Score = 50.4 bits (115), Expect = 4e-05
Identities = 37/161 (22%), Positives = 74/161 (45%), Gaps = 2/161 (1%)
Frame = +3
Query: 150 LKNLVQQSDFPH-LLIYGPSGAGKKTRVMCLLRELYGSGVERLRQETMNFTTPSNKKIEI 326
L L + P+ +L+ G G GK T L+ + E + NF + K
Sbjct: 21 LSGLYKHKKLPNKILLSGKKGLGKSTLAYHLINYILSEN-EDYKYNLENFCIHKDNK-SY 78
Query: 327 MTVSSNYHIEVNPTDVGIHDRVVIMDLVKN-VAQTHQIDSNGQREFKVVILNEVDDLTKD 503
+ +N H D+ + + + ++ ++ T++ N F ++++ V++L K+
Sbjct: 79 KLLQNNSHPNFYLIDLLTEKKSIDVGQIREMISYTNKSTFNNMARF--ILIDNVENLNKN 136
Query: 504 AQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISV 626
+ +AL + +E+ ILI NS ++P ++SRCLT +
Sbjct: 137 SVNALLKIIEEPNENVFFILINNSEKNILPTLKSRCLTFKI 177
>UniRef50_Q1GTQ0 Cluster: DNA-directed DNA polymerase; n=1;
Sphingopyxis alaskensis|Rep: DNA-directed DNA polymerase
- Sphingopyxis alaskensis (Sphingomonas alaskensis)
Length = 326
Score = 50.4 bits (115), Expect = 4e-05
Identities = 26/75 (34%), Positives = 47/75 (62%)
Frame = +3
Query: 387 RVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILI 566
R + +D V+ V + + S +++V+I++ VDDL D +AL +T+E+ A +L+
Sbjct: 95 RNITIDQVRQVIRRLHL-SLSLGDWRVIIVDAVDDLESDGANALLKTLEEPPARTLFLLV 153
Query: 567 ANSISRVIPAIRSRC 611
++S R++P IRSRC
Sbjct: 154 SHSPGRLLPTIRSRC 168
>UniRef50_A5V2B2 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Sphingomonas wittichii RW1|Rep: DNA polymerase
III, subunits gamma and tau - Sphingomonas wittichii RW1
Length = 582
Score = 50.4 bits (115), Expect = 4e-05
Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 1/174 (0%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPH-LLIYGPSGAGKKTRVMCLLRELYGSGVE 269
K+RP++ +L L N +++ H L+ G G GK + + + L G +
Sbjct: 14 KYRPQNFNELIGQDAMVTTLANAIRRGRLAHAFLLTGVRGVGKTSTARLIAKALNCIGPD 73
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
T++ P + ++ HI+V D H + D V+ + + + S
Sbjct: 74 GQGGPTID---PCGVCEPCVAIAEGRHIDVVEMDAASHTSI---DDVREIIEAVRYASVS 127
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
R +K+ I++EV L+K A + L +T+E+ A + + +++V + SRC
Sbjct: 128 AR-YKIYIIDEVHMLSKSAFNGLLKTLEEPPAHVKFLFATTEVNKVPITVLSRC 180
>UniRef50_Q8SSG6 Cluster: DNA REPLICATION FACTOR (ACTIVATOR 1) 36
kDa SUBUNIT; n=1; Encephalitozoon cuniculi|Rep: DNA
REPLICATION FACTOR (ACTIVATOR 1) 36 kDa SUBUNIT -
Encephalitozoon cuniculi
Length = 283
Score = 50.4 bits (115), Expect = 4e-05
Identities = 30/64 (46%), Positives = 39/64 (60%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAPPX 641
K VIL+E ++LT DAQH LRR +E V T R I I N S++I +RSR +SV P
Sbjct: 86 KTVILDECENLTSDAQHCLRRVIEDSVNT-RFIFITNYPSKIIGPLRSR--LVSVKFTPT 142
Query: 642 NLKL 653
K+
Sbjct: 143 ESKI 146
Score = 37.9 bits (84), Expect = 0.21
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +3
Query: 81 LWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSD---FPHLLIYGPSGAGKKT 224
LW +K+RPK E LKN+++ S P+LL+YGP G GK T
Sbjct: 2 LWTEKYRPKSTDAF----EGPEHLKNILRNSSGRGHPNLLLYGPPGTGKTT 48
>UniRef50_Q9QXI2 Cluster: Replication factor C subunit 2; n=8;
Eutheria|Rep: Replication factor C subunit 2 - Rattus
norvegicus (Rat)
Length = 216
Score = 50.0 bits (114), Expect = 5e-05
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +3
Query: 471 ILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
IL+E D +T AQ ALRRTME Y T R L N+ ++I I+SRC
Sbjct: 1 ILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRC 47
>UniRef50_Q9PFI1 Cluster: DNA polymerase III, delta subunit; n=15;
Xanthomonadaceae|Rep: DNA polymerase III, delta subunit
- Xylella fastidiosa
Length = 330
Score = 50.0 bits (114), Expect = 5e-05
Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 2/153 (1%)
Frame = +3
Query: 186 LLIYGPSGAGKKTRVMCLLRELYGSGVERLRQETMN--FTTPSNKKIEIMTVSSNYHIEV 359
LL+ GP G G++ + L + G G+ + ++ T ++ +++++ +
Sbjct: 40 LLLCGPEGLGQRAVALALADTVLGKGLTEVARQRCRKLITAGTHPDLQLVSFIPMKTADK 99
Query: 360 NPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKY 539
T++ I I DL + + T Q GQ + VVI++ D + A +AL +T+E+
Sbjct: 100 LRTEIVIEQ---IRDLSEKLVLTPQY---GQAQ--VVIIDPADAINPAACNALLKTLEEP 151
Query: 540 VATCRLILIANSISRVIPAIRSRCLTISVPAPP 638
+ C L LI+ +R+ IRSRC + PP
Sbjct: 152 ASGCYLWLISPQPARLPVTIRSRCQRLEFKLPP 184
>UniRef50_Q7UK75 Cluster: DNA polymerase III, tau/gamma subunit;
n=1; Pirellula sp.|Rep: DNA polymerase III, tau/gamma
subunit - Rhodopirellula baltica
Length = 376
Score = 50.0 bits (114), Expect = 5e-05
Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 5/156 (3%)
Frame = +3
Query: 186 LLIYGPSGAGKKTRVMCLLRELYGSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVN- 362
LL GP+G GK + + L + L ER M +++ + I+V
Sbjct: 56 LLFVGPNGVGKTSAAILLTQTLL---CERSTARDMAPCGECPSCVQVRVGTHPDFIQVRK 112
Query: 363 PTDVGIHDRVVIMDLVKNVAQT---HQIDSNG-QREFKVVILNEVDDLTKDAQHALRRTM 530
P D + +++ V Q H + Q + KV IL++ D L ++ + L +T+
Sbjct: 113 PDDKTLIPLELLIGPVDARLQEGFCHDVHLRPMQAQRKVAILHDADFLNEEGANCLLKTL 172
Query: 531 EKYVATCRLILIANSISRVIPAIRSRCLTISVPAPP 638
E+ A +ILI +S R +P IRSRC + PP
Sbjct: 173 EEPPANALIILIGSSEQRQLPTIRSRCQVLRFQTPP 208
>UniRef50_UPI0000F31775 Cluster: Cell cycle checkpoint protein RAD17
(hRad17) (RF-C/activator 1 homolog).; n=1; Bos
taurus|Rep: Cell cycle checkpoint protein RAD17 (hRad17)
(RF-C/activator 1 homolog). - Bos Taurus
Length = 611
Score = 49.6 bits (113), Expect = 6e-05
Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 14/180 (7%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPH--------LLIYGPSGAGKKTRVMCL 239
WVDK++P+ +L HK++ ++ ++ LLI GP G GK T + L
Sbjct: 91 WVDKYKPETQHELAVHKKKIEEVETWLKAEVLERQPKQGGSILLITGPPGCGKTTTIKIL 150
Query: 240 LRELYGSGVERLRQETMNFTTPSNKK---IEIMTVSSNYHIEVNPTDVGIHDRVVIMDLV 410
+E +G V QE +N P +K EI+ S++HI + + + ++
Sbjct: 151 AKE-HGIQV----QEWINPVLPEFQKDDFKEILNPESSFHIFPYQSQIAVFKEFLLRATK 205
Query: 411 KNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYV--ATCRLI-LIANSIS 581
N Q + + + + K++++ ++ + H L + KYV C LI +I++S+S
Sbjct: 206 YN--QLQMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVQIGRCPLIFIISDSLS 263
>UniRef50_Q3AG11 Cluster: Putative DNA polymerase III, delta prime
subunit; n=1; Carboxydothermus hydrogenoformans
Z-2901|Rep: Putative DNA polymerase III, delta prime
subunit - Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008)
Length = 267
Score = 49.6 bits (113), Expect = 6e-05
Identities = 24/57 (42%), Positives = 35/57 (61%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPA 632
KV++L EVD +T DA +A +T+E+ A +LIA +V+P I SRC + V A
Sbjct: 95 KVIVLEEVDKMTLDAANAFLKTLEEPPAGVTYLLIATMPEKVLPTIHSRCQKVKVSA 151
>UniRef50_Q5GQL5 Cluster: Sliding clamp loader gp44; n=5; root|Rep:
Sliding clamp loader gp44 - Cyanophage phage S-PM2
Length = 315
Score = 49.6 bits (113), Expect = 6e-05
Identities = 29/91 (31%), Positives = 47/91 (51%)
Frame = +3
Query: 348 HIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRT 527
+I +N +D G + + V+ A T + S KVVI++E D+ T D Q +LR
Sbjct: 67 YIVINGSDEG-RFLDTVRNRVRQFATTVSLTSGAPH--KVVIIDEADNTTHDVQLSLRTA 123
Query: 528 MEKYVATCRLILIANSISRVIPAIRSRCLTI 620
+E++ CR I N +++I + SRC I
Sbjct: 124 VEEFHGNCRFIFTCNFQNKIIEPLHSRCTVI 154
>UniRef50_Q9KQI3 Cluster: DNA polymerase III, delta prime subunit;
n=16; Vibrio cholerae|Rep: DNA polymerase III, delta
prime subunit - Vibrio cholerae
Length = 324
Score = 49.2 bits (112), Expect = 9e-05
Identities = 26/102 (25%), Positives = 54/102 (52%)
Frame = +3
Query: 342 NYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALR 521
++H+ V P +G V + + +AQ +S+ ++++++ D + + + +AL
Sbjct: 78 DFHV-VKPEKIGKSITVEQIRQMNRIAQ----ESSQLSGYRLIVIEPADAMNESSANALL 132
Query: 522 RTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAPPXNL 647
+T+E+ C IL+ + I ++P I SRC + +PAP L
Sbjct: 133 KTLEEPAPNCLFILVTSRIKHLLPTIVSRCQRLVLPAPTTAL 174
>UniRef50_A6LMU3 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Thermosipho melanesiensis BI429|Rep: DNA
polymerase III, subunits gamma and tau - Thermosipho
melanesiensis BI429
Length = 460
Score = 49.2 bits (112), Expect = 9e-05
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 1/177 (0%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVE 269
K+RPK ++L N ++ + H I+ GP G GK T L + L +
Sbjct: 7 KYRPKKFLELVGQSHVKKLFVNSLKNKEISHAYIFAGPRGTGKTTVARILAKSLNCENPQ 66
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
+ P N +++ ++V D + + D ++ + +T +
Sbjct: 67 EIE--------PCNMCNACISIDKGNFMDVLELDAASNRGI---DEIRKIRETVNYHT-A 114
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTI 620
Q ++KV I++E LTK+A +AL +T+E+ + IL + ++ I SRC I
Sbjct: 115 QGKYKVYIIDEAHMLTKEAFNALLKTLEEPPSNVVFILATTNPEKIPQTIISRCQVI 171
>UniRef50_A3VTZ3 Cluster: DNA polymerase III, delta prime subunit;
n=1; Parvularcula bermudensis HTCC2503|Rep: DNA
polymerase III, delta prime subunit - Parvularcula
bermudensis HTCC2503
Length = 331
Score = 49.2 bits (112), Expect = 9e-05
Identities = 24/83 (28%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Frame = +3
Query: 390 VVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIA 569
+++ D+ + +A+ +Q +G+R VV+++ D++ A +AL +++E+ L+L+A
Sbjct: 95 ILVNDIREMIARFYQTSVSGRR---VVVIDAADEMNASAANALLKSLEEPPQGATLLLLA 151
Query: 570 NSISRVIPAIRSRCLTISV-PAP 635
++ R++P IRSRC + + P+P
Sbjct: 152 SAPGRLLPTIRSRCRRLDLGPSP 174
>UniRef50_A3IWH2 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Cyanothece sp. CCY 0110|Rep: DNA polymerase III
gamma and tau subunits - Cyanothece sp. CCY 0110
Length = 373
Score = 49.2 bits (112), Expect = 9e-05
Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 1/180 (0%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPH-LLIYGPSGAGKKTRVMCLLRELYGS 260
W K+RP+ + L L L+ + P LL+ GP G GK + + L
Sbjct: 13 WHLKYRPQSINDLTGQDSVQKVLTRLIAEDSVPQALLLSGPKGTGKTSTARIIAMSL--- 69
Query: 261 GVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQID 440
E TTP + + + ++V D H+ V D+ K VA
Sbjct: 70 -----NCEKGVTTTPCGECKNCQAIQNGNSLDVVELDAASHNGVD--DIRKLVADASYAP 122
Query: 441 SNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTI 620
+ + +V I++E L+ AQ+A +T+E+ + +L +++ +RSRCL +
Sbjct: 123 FSART--RVFIIDEAHQLSNSAQNAFLKTLEEPNNHTKFLLATTEPHKMLETVRSRCLPL 180
>UniRef50_Q6MDZ7 Cluster: Probable DNA-directed DNA polymerase III
subunits gamma/tau dnaX; n=1; Candidatus Protochlamydia
amoebophila UWE25|Rep: Probable DNA-directed DNA
polymerase III subunits gamma/tau dnaX - Protochlamydia
amoebophila (strain UWE25)
Length = 522
Score = 48.4 bits (110), Expect = 1e-04
Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 2/184 (1%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVE 269
K RP+ ++ + LKN ++ ++ G G GK T L ++ +
Sbjct: 10 KFRPQTFKEVFGQEAVVTTLKNAIKFKRLAQAYLFCGSRGTGKTT-----LARIFAKAIN 64
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQT-HQIDSN 446
+ T +F P N+ ++S ++V D H + + ++ + +T ++
Sbjct: 65 -CQNSTEDFE-PCNQCTSCREITSGSSLDVLEIDGASHRGI---EDIRQINETVGYAATS 119
Query: 447 GQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISV 626
GQ +KV I++EV LTK+A +AL +T+E+ + I +V+P I SRC ++
Sbjct: 120 GQ--YKVYIIDEVHMLTKEAFNALLKTLEEPPPKVKFIFATTEAHKVLPTILSRCQRFNL 177
Query: 627 PAPP 638
P
Sbjct: 178 SRIP 181
>UniRef50_A7HD56 Cluster: DNA polymerase III, delta prime subunit;
n=2; Anaeromyxobacter|Rep: DNA polymerase III, delta
prime subunit - Anaeromyxobacter sp. Fw109-5
Length = 347
Score = 48.4 bits (110), Expect = 1e-04
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +3
Query: 393 VIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIAN 572
+++D V++V + + VIL+ D + AQ+AL +T+E+ L+L+A
Sbjct: 110 IVVDQVRDVVDRRLAMKRFEGRRRFVILDPADAMNPQAQNALLKTLEEPPEATTLVLVAA 169
Query: 573 SISRVIPAIRSRCLTIS-VPAP 635
S ++P IRSRCL + P P
Sbjct: 170 SPDALLPTIRSRCLRVPFAPLP 191
>UniRef50_A4E9Y5 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 825
Score = 48.4 bits (110), Expect = 1e-04
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 1/174 (0%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVE 269
K+RP + + L++ + + H ++ GP G GK T L + L E
Sbjct: 7 KYRPLTFDSVVGQQHIVSTLEHAITEGRLSHAYLFCGPRGTGKTTMARILAKALLCRNAE 66
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
R E + P E ++ H +V D V D V+ +
Sbjct: 67 AARAEGASGCLPDGACEECELIAEGNHPDVYELDAASRTGV---DNVREEIINSVNFAPV 123
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
+ ++K+ I++EV LT A +AL +T+E+ A +L +++ I SRC
Sbjct: 124 RGKYKIYIIDEVHMLTTAAFNALLKTLEEPPAHVIFVLCTTDPQKILETILSRC 177
>UniRef50_A3UCJ6 Cluster: DNA polymerase III, delta prime subunit;
n=1; Oceanicaulis alexandrii HTCC2633|Rep: DNA
polymerase III, delta prime subunit - Oceanicaulis
alexandrii HTCC2633
Length = 346
Score = 48.4 bits (110), Expect = 1e-04
Identities = 37/150 (24%), Positives = 71/150 (47%), Gaps = 1/150 (0%)
Frame = +3
Query: 189 LIYGPSGAGKKTRVMCLLRELYGSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPT 368
++ GP G GK + L R L G+ + P +++E ++ I
Sbjct: 48 MVSGPKGVGKASFAYRLARRLLGARATDEAGLASDPDDPVCRRLEALSHPDFLLIRRPYN 107
Query: 369 D-VGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVA 545
D G + ++ + + ++G + ++V I++ D+L ++ +AL +T+E+
Sbjct: 108 DKTGKLKGEIPVEEARRAPEFFSKSASG-KGWRVCIVDSADELNVNSANALLKTLEEPPQ 166
Query: 546 TCRLILIANSISRVIPAIRSRCLTISVPAP 635
LILI N+ R++P IRSRC + + AP
Sbjct: 167 RGLLILIVNTPGRLLPTIRSRCRRLILRAP 196
>UniRef50_Q7CZ44 Cluster: AGR_C_2759p; n=6; Rhizobiaceae|Rep:
AGR_C_2759p - Agrobacterium tumefaciens (strain C58 /
ATCC 33970)
Length = 350
Score = 48.0 bits (109), Expect = 2e-04
Identities = 36/178 (20%), Positives = 79/178 (44%), Gaps = 5/178 (2%)
Frame = +3
Query: 102 PKDLMKLDYHKEQAVRLKNLVQQSDFPH-LLIYGPSGAGKKTRVMCLLRELYGSGVERLR 278
P+ +L H+E L + H +LI GP G GK T +
Sbjct: 23 PQQNTRLFGHEEAEAFLAQSYRSGKGHHAILIEGPEGIGKATLAFRFANHVLTHPDPASA 82
Query: 279 QETMNFTTPSNKKIEIMTVSSNYHIE--VNPTD--VGIHDRVVIMDLVKNVAQTHQIDSN 446
+ + P + +T +++++ P D G + +D V+ ++
Sbjct: 83 PDFLADPDPQSLVSRQITAGASHNLLHLTRPVDEKTGRVKSAITVDEVRRAGHFFS-QTS 141
Query: 447 GQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTI 620
G +++VI++ DDL ++A +A+ + +E+ ++++++ +++P IRSRC+ +
Sbjct: 142 GTGNWRIVIIDPADDLNRNAANAILKILEEPPKRAMFLVLSHAPGKLLPTIRSRCMPL 199
>UniRef50_A4M5U6 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Petrotoga mobilis SJ95|Rep: DNA polymerase
III, subunits gamma and tau - Petrotoga mobilis SJ95
Length = 467
Score = 48.0 bits (109), Expect = 2e-04
Identities = 43/178 (24%), Positives = 80/178 (44%), Gaps = 1/178 (0%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVE 269
K+RPKD ++ KN + + + H I+ GP G GK T L + L +
Sbjct: 8 KYRPKDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCKDPQ 67
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
P NK +++++N ++V D + + D ++N+ +
Sbjct: 68 GYN--------PCNKCENCVSINNNSFLDVIEMDAASNRGI---DEIRNIRDSSNYRPV- 115
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTIS 623
++KV I++E LT++A +AL +T+E+ + IL ++ +V I SR I+
Sbjct: 116 YGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVIFILATTNLEKVPDTIISRAQIIN 173
>UniRef50_A0UX52 Cluster: DNA-directed DNA polymerase; n=1;
Clostridium cellulolyticum H10|Rep: DNA-directed DNA
polymerase - Clostridium cellulolyticum H10
Length = 322
Score = 48.0 bits (109), Expect = 2e-04
Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 1/165 (0%)
Frame = +3
Query: 129 HKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVERLRQETMNFTTP 305
H+ L+ +Q+ + H I+ GP G GK+ + L R++ F
Sbjct: 4 HQRIISALRTAIQKDNVSHAYIFEGPDGVGKRATALKFASMLM------CRED--QFPCG 55
Query: 306 SNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEV 485
K ++ +SN + ++ D+ + ++ ++N+ + I ++KV+I+N+
Sbjct: 56 ECKSCQLYREASNPDFQ----EIIQKDKSISVEEIRNILKGLVIRPL-YSDYKVIIINDA 110
Query: 486 DDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTI 620
D +T AQ+AL +++E+ IL S++ V IRSRC I
Sbjct: 111 DTMTIQAQNALLKSLEEPPPYVVFILTVQSLAAVAQTIRSRCQRI 155
>UniRef50_Q98RV1 Cluster: Replication factor C 37 KD subunit; n=1;
Guillardia theta|Rep: Replication factor C 37 KD subunit
- Guillardia theta (Cryptomonas phi)
Length = 290
Score = 48.0 bits (109), Expect = 2e-04
Identities = 24/76 (31%), Positives = 45/76 (59%)
Frame = +3
Query: 399 MDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSI 578
+ +++N + S ++ KVV+++E D L+ +Q ALRR +EK+ + R ILI N
Sbjct: 66 ISIIRNKIKIFCRSSIQSKKLKVVVIDEADLLSVISQEALRRIIEKFSLSSRFILICNYP 125
Query: 579 SRVIPAIRSRCLTISV 626
+R+I ++SR + +
Sbjct: 126 TRIIEPLQSRFILFKI 141
>UniRef50_Q6WI74 Cluster: Gp44; n=1; Vibrio phage KVP40|Rep: Gp44 -
Bacteriophage KVP40
Length = 318
Score = 48.0 bits (109), Expect = 2e-04
Identities = 23/49 (46%), Positives = 31/49 (63%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSR 608
K VIL+E D+LT DAQ ALR +E+Y R +L N +++ IRSR
Sbjct: 104 KAVILDEADNLTPDAQKALRGLIEQYSKNVRFVLTCNYAQKILTPIRSR 152
>UniRef50_P52024 Cluster: DNA polymerase III subunit delta'; n=19;
Pseudomonadaceae|Rep: DNA polymerase III subunit delta'
- Pseudomonas aeruginosa
Length = 328
Score = 48.0 bits (109), Expect = 2e-04
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 2/151 (1%)
Frame = +3
Query: 189 LIYGPSGAGKKTRVMCLLRELYGSGVERLRQETMNFTTPSNKKIEIMTVSSNY-HIEVNP 365
L+YGP+G GK+ L E + + + R K +++ ++ + + P
Sbjct: 26 LLYGPAGIGKRA-----LAEHWAAQLLCQRPAAAG-ACGECKACQLLAAGTHPDYFVLEP 79
Query: 366 TDVGIHDRV-VIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYV 542
+ RV + DLV V QT Q+ G R KVV+L + + +A +AL +++E+
Sbjct: 80 EEAEKPIRVDQVRDLVGFVVQTAQL---GGR--KVVLLEPAEAMNVNAANALLKSLEEPS 134
Query: 543 ATCRLILIANSISRVIPAIRSRCLTISVPAP 635
L+LI++ SR++P I+SRC+ + P P
Sbjct: 135 GDTVLLLISHQPSRLLPTIKSRCVQQACPLP 165
>UniRef50_UPI0000DAE388 Cluster: hypothetical protein
Rgryl_01000133; n=1; Rickettsiella grylli|Rep:
hypothetical protein Rgryl_01000133 - Rickettsiella
grylli
Length = 324
Score = 47.6 bits (108), Expect = 3e-04
Identities = 37/179 (20%), Positives = 80/179 (44%), Gaps = 1/179 (0%)
Frame = +3
Query: 120 LDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVERLRQETMNF 296
L +H +Q +L Q+ H L++ G G GK + + L +Q +
Sbjct: 8 LPWHTQQWQQLYRSHQEGRLSHALLFAGQMGLGKSLFALHFAKTLL------CKQPKQSR 61
Query: 297 TTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVIL 476
+ + + + V++ H +++ + + +D ++++ T +++ Q +K++++
Sbjct: 62 ACQACR--DCILVAAGTHPDLSLLTTEKSTQGIKIDQIRDI--TDKLNHTSQATYKIIVI 117
Query: 477 NEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAPPXNLKL 653
N D L A AL +++E+ IL+ ++P IRSRC I P +L +
Sbjct: 118 NPADSLLVAASQALLKSLEEPSCRSLFILLTEKREHLLPTIRSRCQLIRFNPPKKSLAM 176
>UniRef50_Q0A8S3 Cluster: DNA polymerase III, delta prime subunit;
n=1; Alkalilimnicola ehrlichei MLHE-1|Rep: DNA
polymerase III, delta prime subunit - Alkalilimnicola
ehrlichei (strain MLHE-1)
Length = 337
Score = 47.6 bits (108), Expect = 3e-04
Identities = 20/65 (30%), Positives = 42/65 (64%)
Frame = +3
Query: 459 FKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAPP 638
+++ +++ D LT +A ++L +T+E+ AT L+L+++ +++ IRSRC +++P PP
Sbjct: 127 WRIALIDPADTLTVNAANSLLKTLEEPPATTLLVLVSSRPAQLPATIRSRCRHLTIPVPP 186
Query: 639 XNLKL 653
L
Sbjct: 187 AERAL 191
>UniRef50_A7HK43 Cluster: DNA polymerase III gamma/tau subunits-like
protein; n=1; Fervidobacterium nodosum Rt17-B1|Rep: DNA
polymerase III gamma/tau subunits-like protein -
Fervidobacterium nodosum Rt17-B1
Length = 272
Score = 47.6 bits (108), Expect = 3e-04
Identities = 20/67 (29%), Positives = 41/67 (61%)
Frame = +3
Query: 435 IDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCL 614
+D + K+V++ E D +T++A +A +T+E+ ++IL+ + S ++P I+SR
Sbjct: 60 LDFRSNDKAKIVVVYEADKMTQEAANAFLKTLEEPPQYAKIILVTSRWSSILPTIKSRVQ 119
Query: 615 TISVPAP 635
I++P P
Sbjct: 120 RINIPFP 126
>UniRef50_Q9RMF0 Cluster: DNA polymerase III subunits tau and gamma;
n=1; Zymomonas mobilis|Rep: DNA polymerase III subunits
tau and gamma - Zymomonas mobilis
Length = 597
Score = 47.2 bits (107), Expect = 3e-04
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 1/155 (0%)
Frame = +3
Query: 150 LKNLVQQSDFPH-LLIYGPSGAGKKTRVMCLLRELYGSGVERLRQETMNFTTPSNKKIEI 326
L N + + H L+ G G GK + + + L G + T++ P +
Sbjct: 5 LGNAIARDRLAHAFLLTGVRGVGKTSTARLIAKALNCVGKDGHGGMTID---PCGECEAC 61
Query: 327 MTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDA 506
++ HI+V D H V D ++++ ++ + S R FKV I++EV L+K A
Sbjct: 62 RAIAEGRHIDVVEMDAASHTGV---DDIRDIVESVRYASVSAR-FKVYIIDEVHMLSKSA 117
Query: 507 QHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
+AL +T+E+ A + + I++V + SRC
Sbjct: 118 FNALLKTLEEPPAHVKFLFATTEINKVPITVLSRC 152
>UniRef50_Q7P6U1 Cluster: DNA polymerase III subunit gamma/tau; n=3;
Fusobacterium nucleatum|Rep: DNA polymerase III subunit
gamma/tau - Fusobacterium nucleatum subsp. vincentii
ATCC 49256
Length = 490
Score = 47.2 bits (107), Expect = 3e-04
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 1/174 (0%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVE 269
K+RP ++ E LK ++ H ++ GP G GK T + L GV
Sbjct: 14 KYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTT-----IARLIAKGVN 68
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
L + P N+ ++ ++ D + + + +K ++ G
Sbjct: 69 CLNLKENG--EPCNECKNCKAINEGRFSDLIEIDAASNRSIDEIRSLKEKINYQPVE--G 124
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
+ KV I++E LTK+A +AL +T+E+ A IL + +++P I SRC
Sbjct: 125 LK--KVYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISRC 176
>UniRef50_A5FRM9 Cluster: DNA polymerase III, subunits gamma and
tau; n=3; Dehalococcoides|Rep: DNA polymerase III,
subunits gamma and tau - Dehalococcoides sp. BAV1
Length = 570
Score = 47.2 bits (107), Expect = 3e-04
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 2/175 (1%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVE 269
K RP+ L L + A LKN + ++ GP G GK T +L +
Sbjct: 12 KWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGK-TSTGRILAKAVNCTTN 70
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNP-TDVGIHDRVVIMDLVKNVAQTHQIDSN 446
+ + E N T P + I SS IE++ ++ G+ D I +L + V + + +
Sbjct: 71 QGKGEPCN-TCPMC--LSITEGSSMDIIEIDAASNTGVDD---IRELKEKVQYSPSLAN- 123
Query: 447 GQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
+KV I++EV L+ A +AL +T+E+ IL I +V+P I SRC
Sbjct: 124 ----YKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRC 174
>UniRef50_A4CAL1 Cluster: Putative DNA polymerase III delta'
subunit; n=1; Pseudoalteromonas tunicata D2|Rep:
Putative DNA polymerase III delta' subunit -
Pseudoalteromonas tunicata D2
Length = 302
Score = 47.2 bits (107), Expect = 3e-04
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 3/150 (2%)
Frame = +3
Query: 186 LLIYGPSGAGKKTRVMCLLRELYGSGVERLRQETMNFTTPSN-KKIEIMTVSSNYHIEVN 362
LL+ G G GK+T + L L L N T K ++ S+ V
Sbjct: 26 LLLQGVQGIGKQTMAVHLAGAL-------LCPNQQNLTACGQCKSCHLLAAQSHPDYLV- 77
Query: 363 PTDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYV 542
+G + + +D V+ +A Q S GQR KVV++N+ D +T A +AL +T+E+
Sbjct: 78 ---LGHEQKTIGVDEVRKIADFCQT-SAGQRGAKVVVVNDADLMTTAAANALLKTLEEPA 133
Query: 543 ATCRLILIANSISRVIPAIRSRC--LTISV 626
LIL++ R+ + SRC +T+SV
Sbjct: 134 NNRFLILVSAQAERLPATVLSRCSQVTLSV 163
>UniRef50_Q5NNJ5 Cluster: DNA polymerase III delta prime subunit;
n=2; Sphingomonadaceae|Rep: DNA polymerase III delta
prime subunit - Zymomonas mobilis
Length = 330
Score = 46.8 bits (106), Expect = 5e-04
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAPPX 641
+VVI++ +DDL + A +AL + +E+ A LI+++ R++P IRSRC +S
Sbjct: 127 RVVIIDSIDDLERSAANALLKNLEEPPAGTIFFLISHAAGRLLPTIRSRCRILSFHLLED 186
Query: 642 NL 647
NL
Sbjct: 187 NL 188
>UniRef50_Q47DZ6 Cluster: DNA polymerase III delta prime subunit;
n=1; Dechloromonas aromatica RCB|Rep: DNA polymerase III
delta prime subunit - Dechloromonas aromatica (strain
RCB)
Length = 339
Score = 46.8 bits (106), Expect = 5e-04
Identities = 19/62 (30%), Positives = 37/62 (59%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAPPX 641
++VI+N + + + ++L +T+E+ A +L+++ R++P IRSRC + VP P
Sbjct: 122 RIVIVNPTEAMNRSTANSLLKTLEEPSADTLFLLVSSEPMRLLPTIRSRCQVVPVPVPSA 181
Query: 642 NL 647
L
Sbjct: 182 KL 183
>UniRef50_Q11HZ8 Cluster: DNA polymerase III, delta prime subunit;
n=2; Mesorhizobium|Rep: DNA polymerase III, delta prime
subunit - Mesorhizobium sp. (strain BNC1)
Length = 354
Score = 46.8 bits (106), Expect = 5e-04
Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 7/168 (4%)
Frame = +3
Query: 129 HKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVERLRQETMNFTTP 305
H+ L + + H L++ G G GK T L L+ + RL ++F+
Sbjct: 28 HENARSMLASAYRAGKLHHALLFAGRPGIGKATLAFHLAHHLFTNPDHRLGP--LDFSDI 85
Query: 306 SNKKIEIMTVSSNYHIEVNPTDVGIHDR------VVIMDLVKNVAQTHQIDSNGQREFKV 467
+ + H V +R V+ +D ++ VA+ + + ++V
Sbjct: 86 DTNSQDFRLAAQGAHPGVLHLTRPFVERDKKFKTVITVDEIRRVARFLSL-TPPDGGYRV 144
Query: 468 VILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
VI++ DD+ +A +AL + +E+ ILI +S R++P IRSRC
Sbjct: 145 VIVDPADDMNANAANALLKNLEEPPPRTIFILITHSFGRLLPTIRSRC 192
>UniRef50_A7D8N2 Cluster: DNA-directed DNA polymerase; n=2;
Methylobacterium extorquens PA1|Rep: DNA-directed DNA
polymerase - Methylobacterium extorquens PA1
Length = 360
Score = 46.8 bits (106), Expect = 5e-04
Identities = 37/185 (20%), Positives = 80/185 (43%), Gaps = 5/185 (2%)
Frame = +3
Query: 99 RPKDLMKLDYHKEQAVRLKNLVQQSDFPHL-LIYGPSGAGKKTRVMCLLRELYGSGVERL 275
RP++ +L H + H LI GP+G GK T + R L
Sbjct: 26 RPREQTRLFGHGHAEAAFAGALAAGRLHHAWLIGGPAGIGKATLAYRVARRLVADPRTLP 85
Query: 276 RQETMNFTTPSNKKIEIMTVSSNYHIEVN----PTDVGIHDRVVIMDLVKNVAQTHQIDS 443
++++ ++M +S + + P + R+ + D + +
Sbjct: 86 SPDSLDVPEDHPAARQVMALSHPNLVALRRVQAPGAKTLPTRISV-DAAREALALFGATA 144
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTIS 623
G+ ++V I++ +DL ++ +AL + +E+ ++++++ R++P IRSRC ++
Sbjct: 145 GGEGGWRVCIVDSAEDLNANSANALLKMIEEPPPRAIFLIVSHAPGRLLPTIRSRCRALT 204
Query: 624 VPAPP 638
+ A P
Sbjct: 205 LRALP 209
>UniRef50_A6VXK9 Cluster: DNA polymerase III, delta prime subunit;
n=1; Marinomonas sp. MWYL1|Rep: DNA polymerase III,
delta prime subunit - Marinomonas sp. MWYL1
Length = 312
Score = 46.8 bits (106), Expect = 5e-04
Identities = 24/80 (30%), Positives = 44/80 (55%)
Frame = +3
Query: 405 LVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISR 584
LV+ ++Q Q+ N KVV++ + +A +A+ + +E+ +L ++ S
Sbjct: 94 LVRQISQKPQVGQN-----KVVLITHAQAMNINAANAVLKALEEPADRTFFVLTSSQSSS 148
Query: 585 VIPAIRSRCLTISVPAPPXN 644
++P IRSRCL ++VP P N
Sbjct: 149 LMPTIRSRCLLVNVPTPSMN 168
>UniRef50_A0KKI0 Cluster: DNA polymerase III, delta' subunit; n=2;
Aeromonas|Rep: DNA polymerase III, delta' subunit -
Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966
/ NCIB 9240)
Length = 315
Score = 46.8 bits (106), Expect = 5e-04
Identities = 21/50 (42%), Positives = 35/50 (70%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
KVVI+ + + +T+ A +AL +T+E+ L+LIA+ +SR++P I SRC
Sbjct: 106 KVVIIPDAERMTESAANALLKTLEEPAGDSLLLLIASQVSRLLPTILSRC 155
>UniRef50_Q9WZF2 Cluster: DNA polymerase III, gamma and tau subunit;
n=2; Thermotoga|Rep: DNA polymerase III, gamma and tau
subunit - Thermotoga maritima
Length = 478
Score = 46.4 bits (105), Expect = 6e-04
Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 1/180 (0%)
Frame = +3
Query: 75 MSLWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLREL 251
M + K+RPK ++ + +Q++ H I+ GP G GK T L + L
Sbjct: 1 MEVLYRKYRPKTFSEVVNQDHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSL 60
Query: 252 YGSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTH 431
E P N + ++V D + + + +++
Sbjct: 61 --------NCENRKGVEPCNSCRACREIDEGTFMDVIELDAASNRGIDEIRRIRDAVGYR 112
Query: 432 QIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
++ ++KV I++EV LTK+A +AL +T+E+ + +L ++ +V P I SRC
Sbjct: 113 PMEG----KYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRC 168
>UniRef50_Q8YMK1 Cluster: DNA polymerase III gamma and tau subunits;
n=3; Nostocaceae|Rep: DNA polymerase III gamma and tau
subunits - Anabaena sp. (strain PCC 7120)
Length = 655
Score = 46.4 bits (105), Expect = 6e-04
Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 1/174 (0%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDF-PHLLIYGPSGAGKKTRVMCLLRELYGSGVE 269
K+RPK+ +L + A L N ++ + P L GP G GK + L + L +
Sbjct: 9 KYRPKNFAELVGQEAIATTLTNAIRTAKIAPAYLFTGPRGTGKTSSARILAKSLNCLNSD 68
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
+ E P ++ Y ++V D + V D ++ + + Q +
Sbjct: 69 KPTAE------PCGVCDVCQGITKGYSLDVIEIDAASNTGV---DNIRELIEKAQF-APV 118
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
Q +KV +++E L+ A +AL +T+E+ +L RV+P I SRC
Sbjct: 119 QCRYKVYVIDECHMLSSAAFNALLKTLEEPPRHVVFVLATTDPQRVLPTIISRC 172
>UniRef50_Q82X62 Cluster: DnaX; DNA polymerase III (Subunits tau and
gamma) protein; n=3; Betaproteobacteria|Rep: DnaX; DNA
polymerase III (Subunits tau and gamma) protein -
Nitrosomonas europaea
Length = 525
Score = 46.0 bits (104), Expect = 8e-04
Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 2/187 (1%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVR-LKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGV 266
K RPKD +L +E VR L N ++Q+ H ++ G G GK T L + L
Sbjct: 10 KWRPKDFSEL-VGQEHVVRALINSMEQNRLHHAYLFTGTRGVGKTTVARILAKAL----- 63
Query: 267 ERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSN 446
E P K M + I++ D + +V M + + AQ + +
Sbjct: 64 ---NCEQGVTAAPCGKCAACMAIDQGNFIDLIELDAASNTQVDAMRELLDNAQYAPVAAR 120
Query: 447 GQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISV 626
+KV +++EV L++ A +A+ +T+E+ + IL ++ + SRCL ++
Sbjct: 121 ----YKVYLIDEVHMLSRSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNL 176
Query: 627 PAPPXNL 647
P +L
Sbjct: 177 KQIPPSL 183
>UniRef50_A5IZC5 Cluster: DNA polymerase III subunit; n=1;
Mycoplasma agalactiae|Rep: DNA polymerase III subunit -
Mycoplasma agalactiae
Length = 300
Score = 46.0 bits (104), Expect = 8e-04
Identities = 23/91 (25%), Positives = 49/91 (53%)
Frame = +3
Query: 363 PTDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYV 542
P +V + + + +V + + S Q +K++IL E+D + + +AL + +E+
Sbjct: 58 PANVMFFNEDLSKSKIVSVMENSTLASFVQNAYKIIILKEIDKASNASLNALLKNIEEPS 117
Query: 543 ATCRLILIANSISRVIPAIRSRCLTISVPAP 635
+ +L +I+ V+P I+SR + I++ AP
Sbjct: 118 SDTIFLLTTRNINSVLPTIQSRSIVINIKAP 148
>UniRef50_Q5E417 Cluster: DNA polymerase III, delta' subunit; n=1;
Vibrio fischeri ES114|Rep: DNA polymerase III, delta'
subunit - Vibrio fischeri (strain ATCC 700601 / ES114)
Length = 268
Score = 45.6 bits (103), Expect = 0.001
Identities = 18/50 (36%), Positives = 35/50 (70%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
+V+I++ + +T+ A +AL +T+E C+ +L+A+S +++P IRSRC
Sbjct: 52 RVIIIDPAEKMTESAANALLKTLEAPPKNCQFVLLADSPHQLLPTIRSRC 101
>UniRef50_Q2STA6 Cluster: DNA polymerase III gamma-tau subunits;
n=2; Mycoplasma|Rep: DNA polymerase III gamma-tau
subunits - Mycoplasma capricolum subsp. capricolum
(strain California kid / ATCC27343 / NCTC 10154)
Length = 669
Score = 45.6 bits (103), Expect = 0.001
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 1/181 (0%)
Frame = +3
Query: 72 KMSLWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRE 248
K SL+ +RPKD + H L+ ++ + H L++ G G GK + +
Sbjct: 5 KQSLY-RAYRPKDFNSVAGHNSIKEILEKQIKDNRINHALLFSGQRGTGKTS-----VAR 58
Query: 249 LYGSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQT 428
++ V L N + N I++ D ++ V + +KN T
Sbjct: 59 IFAKTVNCLNLTGSKACEQCNN---CKLANENQLIDIIEIDAASNNGVDEIREIKNSVST 115
Query: 429 HQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSR 608
I+S ++KV I++EV LTK A +AL +T+E+ IL +++ I SR
Sbjct: 116 LPINS----KYKVYIIDEVHMLTKQAFNALLKTLEEPPVYTIFILATTEFNKIPQTILSR 171
Query: 609 C 611
C
Sbjct: 172 C 172
>UniRef50_A0L8F3 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Magnetococcus sp. MC-1|Rep: DNA polymerase
III, subunits gamma and tau - Magnetococcus sp. (strain
MC-1)
Length = 605
Score = 45.6 bits (103), Expect = 0.001
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 3/176 (1%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELY-GSGV 266
K RP+ L + L++ ++Q PH ++ G G GK T L L G+GV
Sbjct: 13 KWRPRRFEDLIGQEHTVQALRHALEQGRIPHAFLFTGIRGIGKTTLSRLLAMCLNCGTGV 72
Query: 267 ERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIM-DLVKNVAQTHQIDS 443
T N P + H +V D +V M +L+ VA T +
Sbjct: 73 ------TAN---PCGACDSCRAIVRGEHPDVFEVDAASRTKVEQMRELLDGVAYTPSLS- 122
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
+K+ IL+EV L+ + +AL +T+E+ + I + +++P I SRC
Sbjct: 123 ----RYKIYILDEVHMLSASSFNALLKTLEEPPTHVKFIFATTEVRKILPTILSRC 174
>UniRef50_UPI0000DAE674 Cluster: hypothetical protein
Rgryl_01000912; n=1; Rickettsiella grylli|Rep:
hypothetical protein Rgryl_01000912 - Rickettsiella
grylli
Length = 523
Score = 45.2 bits (102), Expect = 0.001
Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 1/175 (0%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVE 269
K+RP+ +L + LKN ++ H ++ G G GK T L +
Sbjct: 9 KYRPQSFDELIGQESTCRILKNALRTQRIHHAYLFTGTRGVGKTTLARLLAK-------- 60
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
L +T P N+ I + +N ++ D R + D +A H S G
Sbjct: 61 CLNCQTQITPEPCNQCISCQAIHANRFTDLIEVDAA--SRTKVEDTRDLLADVHYTPSQG 118
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCL 614
+ +K+ +++EV L+ + +AL +T+E+ +L R+ I SRCL
Sbjct: 119 R--YKIYLIDEVHMLSSHSFNALLKTLEEPPPHVIFLLATTDTQRLPATILSRCL 171
>UniRef50_Q1N4U3 Cluster: DNA polymerase III subunit delta; n=1;
Oceanobacter sp. RED65|Rep: DNA polymerase III subunit
delta - Oceanobacter sp. RED65
Length = 328
Score = 45.2 bits (102), Expect = 0.001
Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Frame = +3
Query: 351 IEVNPTDVGIHDRVVIMDLVKNVAQ-THQIDSNGQREFKVVILNEVDDLTKDAQHALRRT 527
I V P + G + + +D ++ V + S GQR KVV+L + + +A +AL ++
Sbjct: 80 ITVEPEETG---KAIKIDQIRRVTDFVNTTASQGQR--KVVLLGPAEVMNINASNALLKS 134
Query: 528 MEKYVATCRLILIANSISRVIPAIRSRCLTISVPAP 635
+E+ + ++L ++ SR++ I+SRC S P P
Sbjct: 135 LEEPSSQVTMLLYSHQPSRLLATIKSRCQQYSAPTP 170
>UniRef50_A6FHN9 Cluster: HolB; n=1; Moritella sp. PE36|Rep: HolB -
Moritella sp. PE36
Length = 323
Score = 45.2 bits (102), Expect = 0.001
Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Frame = +3
Query: 387 RVVIMDLVKNVAQTHQIDSNGQREF-KVVILNEVDDLTKDAQHALRRTMEKYVATCRLIL 563
+V+ +D +++++Q +++ + Q KVVI+ + + +AL +T+E+ LIL
Sbjct: 84 KVIGVDRIRHISQ--KLNEHSQLGGNKVVIIEHAESFNLASANALLKTLEEPSNGSYLIL 141
Query: 564 IANSISRVIPAIRSRCLTISVPAP 635
+A + S+V+P I SRC + +PAP
Sbjct: 142 LAENKSQVLPTIYSRCQKLHLPAP 165
>UniRef50_A4SXG7 Cluster: DNA-directed DNA polymerase; n=1;
Polynucleobacter sp. QLW-P1DMWA-1|Rep: DNA-directed DNA
polymerase - Polynucleobacter sp. QLW-P1DMWA-1
Length = 377
Score = 45.2 bits (102), Expect = 0.001
Identities = 19/58 (32%), Positives = 37/58 (63%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAP 635
+V+++ ++ L D+ + L +++E+ A IL+A+ + RV+P IRSRC ++ P P
Sbjct: 148 RVILIYPLEMLRHDSANTLLKSLEEPPANTIFILLADRVDRVLPTIRSRCRLLTAPRP 205
>UniRef50_Q4AHZ6 Cluster: DNA-directed DNA polymerase; n=1;
Chlorobium phaeobacteroides BS1|Rep: DNA-directed DNA
polymerase - Chlorobium phaeobacteroides BS1
Length = 613
Score = 44.8 bits (101), Expect = 0.002
Identities = 40/175 (22%), Positives = 79/175 (45%), Gaps = 2/175 (1%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVE 269
K+RP ++ + L+N ++ + ++ GP G GK T L + + + +
Sbjct: 10 KYRPMTFKQVVGQQSITSTLQNAIKNNHLAQAFLFTGPRGVGKTTCARILAKTINCTNLN 69
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVV-IMDLVKNVAQTHQIDSN 446
+ P ++ + +S+ ++ D ++ V I LV+ V Q+
Sbjct: 70 EQLE-------PCDQCESCRSFNSSSSFNIHELDAASNNSVDDIRSLVEQVRIPPQVG-- 120
Query: 447 GQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
++KV I++EV L++ A +A +T+E+ A + IL ++IP I SRC
Sbjct: 121 ---KYKVYIIDEVHMLSQAAFNAFLKTLEEPPAYAKFILATTEKHKIIPTILSRC 172
>UniRef50_Q18U88 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Desulfitobacterium hafniense|Rep: DNA
polymerase III, subunits gamma and tau -
Desulfitobacterium hafniense (strain DCB-2)
Length = 554
Score = 44.8 bits (101), Expect = 0.002
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 1/171 (0%)
Frame = +3
Query: 99 RPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVERL 275
RPK+ + L N + QS H ++ GP G GK T L + L
Sbjct: 11 RPKNFKDMVGQDHVTKTLTNALMQSKVAHAYLFSGPRGTGKTTTAKVLAKAL-------- 62
Query: 276 RQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQR 455
E P N+ +++ +EV D + + D ++++ ++ S G+
Sbjct: 63 NCEHREGVEPCNQCAFCLSIDQGSAMEVFEIDAASNRGI---DEIRDLRDKVRL-SAGES 118
Query: 456 EFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSR 608
++KV I++EV LT +A +AL +T+E+ IL + ++ I SR
Sbjct: 119 KYKVYIIDEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSR 169
>UniRef50_Q181E8 Cluster: Putative DNA polymerase III, delta'
subunit; n=1; Clostridium difficile 630|Rep: Putative
DNA polymerase III, delta' subunit - Clostridium
difficile (strain 630)
Length = 311
Score = 44.8 bits (101), Expect = 0.002
Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +3
Query: 453 REFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISV-P 629
+++K+ I+N + +T +AQ+AL +T+E+ +IL+ N+ ++ I+SRC I P
Sbjct: 90 KDYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIKFSP 149
Query: 630 APPXNLK 650
P +LK
Sbjct: 150 IPIEDLK 156
>UniRef50_A0YGP8 Cluster: DNA polymerase III subunit delta; n=1;
marine gamma proteobacterium HTCC2143|Rep: DNA
polymerase III subunit delta - marine gamma
proteobacterium HTCC2143
Length = 334
Score = 44.8 bits (101), Expect = 0.002
Identities = 24/84 (28%), Positives = 47/84 (55%)
Frame = +3
Query: 387 RVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILI 566
R + +D V+ V + S Q +K+ ++ + + +A +AL +++E+ L L+
Sbjct: 94 RQIKVDQVRAVVEFLSHTSQ-QGGYKIGVITPAEAMNINAANALLKSLEEPSDKTLLFLV 152
Query: 567 ANSISRVIPAIRSRCLTISVPAPP 638
++S +++P IRSRC +S P PP
Sbjct: 153 SDSPGQLLPTIRSRCQQVSFPVPP 176
>UniRef50_Q7NXL6 Cluster: DNA polymerase subunits gamma and tau;
n=1; Chromobacterium violaceum|Rep: DNA polymerase
subunits gamma and tau - Chromobacterium violaceum
Length = 639
Score = 44.4 bits (100), Expect = 0.002
Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 2/180 (1%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVR-LKNLVQQSDFPHL-LIYGPSGAGKKTRVMCLLRELYGSGV 266
K RPK L +E VR L N +++ H L+ G G GK T L + L
Sbjct: 9 KWRPKRFADL-VGQEHVVRALSNALKEQRLHHAYLLTGTRGVGKTTIARILAKSL----- 62
Query: 267 ERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSN 446
ET P + + S +++ D + + D ++ V + Q
Sbjct: 63 ---NCETGTTAEPCGECQACRQIDSGRFVDLLEIDAASNTGI---DNIREVLENAQYAPT 116
Query: 447 GQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISV 626
R FKV I++EV L+K A +A+ +T+E+ + IL +V + SRCL S+
Sbjct: 117 MGR-FKVYIIDEVHMLSKSAFNAMLKTLEEPPGHVKFILATTDPQKVPVTVLSRCLQFSL 175
>UniRef50_Q6MH32 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Bdellovibrio bacteriovorus|Rep: DNA polymerase III
gamma and tau subunits - Bdellovibrio bacteriovorus
Length = 621
Score = 44.4 bits (100), Expect = 0.002
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 2/175 (1%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVE 269
K RP+ + L N ++ PH L++ GP G GK + L + L +
Sbjct: 25 KWRPQSFTDVVGQNHITQTLSNALKNGRLPHALLFTGPRGTGKTSSARILAKALRCPNAQ 84
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQ-IDSN 446
NF P N ++ I+V D ++ V D ++ + T + S+
Sbjct: 85 -------NFV-PCNDCYSCNEIAGGSSIDVIEIDGASNNGV---DAIRELRDTVAFMPSS 133
Query: 447 GQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
G+ +K+ I++EV L+ A +AL +T+E+ A I+ + ++ I SRC
Sbjct: 134 GK--YKIYIIDEVHMLSTSAFNALLKTLEEPPAHVVFIMATTEVHKIPQTILSRC 186
>UniRef50_Q2J4Y9 Cluster: DNA-directed DNA polymerase precursor;
n=3; Frankia|Rep: DNA-directed DNA polymerase precursor
- Frankia sp. (strain CcI3)
Length = 414
Score = 44.4 bits (100), Expect = 0.002
Identities = 19/59 (32%), Positives = 37/59 (62%)
Frame = +3
Query: 459 FKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAP 635
++++++ + D LT+ A +AL + +E+ +L A S+ V+P IRSRC T+++ P
Sbjct: 124 WRILLITDADRLTEAAANALLKALEEPADRAVFLLCAPSVEDVLPTIRSRCRTVALRLP 182
>UniRef50_A7BV86 Cluster: DNA polymerase III, delta prime subunit;
n=1; Beggiatoa sp. PS|Rep: DNA polymerase III, delta
prime subunit - Beggiatoa sp. PS
Length = 334
Score = 44.4 bits (100), Expect = 0.002
Identities = 36/174 (20%), Positives = 83/174 (47%), Gaps = 2/174 (1%)
Frame = +3
Query: 120 LDYHKEQAVRLKNLVQQSDFPH-LLIYGPSGAGKKTRVMCLLRELYGSGVERLRQETMNF 296
L +H ++++ V Q+ PH LL+ GP G GK L L + Q
Sbjct: 5 LPWHDALWQQIQSRVMQNRLPHALLLSGPQGMGKALFAQRLAENLLCEQPQADGQ----- 59
Query: 297 TTPSNKKIEIMTVSSNYHI-EVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVI 473
T K ++ +++ + +V P + G + + ++ ++ + Q + ++ R +++I
Sbjct: 60 TCGHCKPCHLLLANTHPDLFKVEPVEAG---KQISVNQIRELIQFSTLTASYNRH-QIII 115
Query: 474 LNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAP 635
+N + + ++A ++L + +E+ + ++L+++ ++ IRSRC I P
Sbjct: 116 VNPAEAMNRNAANSLLKLLEEPSSDTVIMLVSHQYQALLATIRSRCQRIDFSHP 169
>UniRef50_A6D7X6 Cluster: DNA polymerase III subunit delta'; n=1;
Vibrio shilonii AK1|Rep: DNA polymerase III subunit
delta' - Vibrio shilonii AK1
Length = 318
Score = 44.4 bits (100), Expect = 0.002
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Frame = +3
Query: 408 VKNVAQTHQ--IDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSIS 581
V+ + Q ++ ++S+ ++V+++ + D + A +AL +T+E+ A C IL +
Sbjct: 89 VEQIRQANKWALESSQFGHYRVIVIPQADRMNASAANALLKTLEEPPAQCLFILSTENTK 148
Query: 582 RVIPAIRSRCLTISVPAP 635
++P IRSRC V +P
Sbjct: 149 LLLPTIRSRCEVWHVSSP 166
>UniRef50_A4SWQ4 Cluster: DNA polymerase III, subunits gamma and
tau; n=20; Burkholderiaceae|Rep: DNA polymerase III,
subunits gamma and tau - Polynucleobacter sp.
QLW-P1DMWA-1
Length = 553
Score = 44.4 bits (100), Expect = 0.002
Identities = 43/184 (23%), Positives = 77/184 (41%), Gaps = 1/184 (0%)
Frame = +3
Query: 99 RPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVERL 275
RPK +L L + + Q H ++ G G GK T + + L +G +
Sbjct: 11 RPKTFSELVGQDHVVKALTHALDQGRLHHAWLFTGTRGVGKTTIARIMAKALNCTGADGS 70
Query: 276 RQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQR 455
+ T + P K M + + ++ D + V D+ + + SNG+
Sbjct: 71 GKMT---SEPCGKCPACMEIDAGRFVDYIEMDAASNRGVD--DIAALLEKAAYAPSNGR- 124
Query: 456 EFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAP 635
+KV +++EV LT A +A+ +T+E+ + IL ++ I SRCL ++
Sbjct: 125 -YKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTILSRCLQFNLKQM 183
Query: 636 PXNL 647
P L
Sbjct: 184 PVPL 187
>UniRef50_A3VPV6 Cluster: DNA polymerase III subunits gamma and tau;
n=1; Parvularcula bermudensis HTCC2503|Rep: DNA
polymerase III subunits gamma and tau - Parvularcula
bermudensis HTCC2503
Length = 607
Score = 44.4 bits (100), Expect = 0.002
Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 1/174 (0%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVE 269
K+RP+ L H+ L+N H I G G GK T + R L E
Sbjct: 20 KYRPQSFDDLLGHEAMVRTLRNAFAADRIAHAFILTGVRGVGKTTTARIIARAL-NYETE 78
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
+ + T++ ++ + H +V D R + D+ + + G
Sbjct: 79 TIDRPTVDMPVEGR---HCRAIAESRHPDVYEMDAA--SRTGVGDIRELIEGVRYAPIEG 133
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
+ +KV I++EV L+ +A +AL +T+E+ A + I I +V + SRC
Sbjct: 134 R--YKVYIIDEVHMLSTNAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRC 185
>UniRef50_Q2RTP3 Cluster: DNA-directed DNA polymerase; n=1;
Rhodospirillum rubrum ATCC 11170|Rep: DNA-directed DNA
polymerase - Rhodospirillum rubrum (strain ATCC 11170 /
NCIB 8255)
Length = 374
Score = 44.0 bits (99), Expect = 0.003
Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 14/167 (8%)
Frame = +3
Query: 189 LIYGPSGAGKKTRVMCLLRELYGSGVERLRQETMNFTTPSNKKIE-----IMTVSSNYHI 353
LI GP G GK T R G+E P++ ++ V++ H
Sbjct: 45 LISGPRGIGKATLAFRFARFALAGGLEGGEGGLFGALAPASLAMDPAHPVFRRVAAGSHG 104
Query: 354 EVNPTDVGIHD--------RVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQ 509
++ + G+ + +VI D+ S G ++VVI++ +D+ ++A
Sbjct: 105 DLRVIERGLAEGTGGRRRGEIVIGDVRDLGGFMRMTPSEGG--WRVVIVDGAEDMNRNAA 162
Query: 510 HALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISV-PAPPXNL 647
+AL + +E+ L+L++++ +R++P IRSRC +++ P P L
Sbjct: 163 NALLKGLEEPPGRALLLLVSHNPARLLPTIRSRCRRLALRPLEPAVL 209
>UniRef50_Q2NU34 Cluster: DNA polymerase III delta prime subunit;
n=2; Gammaproteobacteria|Rep: DNA polymerase III delta
prime subunit - Sodalis glossinidius (strain morsitans)
Length = 332
Score = 44.0 bits (99), Expect = 0.003
Identities = 25/64 (39%), Positives = 37/64 (57%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAPPX 641
KVV L + LT+ A +AL +T+E+ +L + SR++P +RSRCL +PAP
Sbjct: 110 KVVWLPHAELLTEQAANALLKTLEEPPTDTYFLLGCQTPSRLLPTLRSRCLYWPLPAPDE 169
Query: 642 NLKL 653
L L
Sbjct: 170 ALGL 173
>UniRef50_Q28SW9 Cluster: DNA-directed DNA polymerase; n=25;
Rhodobacterales|Rep: DNA-directed DNA polymerase -
Jannaschia sp. (strain CCS1)
Length = 374
Score = 44.0 bits (99), Expect = 0.003
Identities = 24/77 (31%), Positives = 44/77 (57%)
Frame = +3
Query: 390 VVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIA 569
V+ +D V+ + + + G R +VVI++ D++ A +AL + +E+ L LI+
Sbjct: 127 VITVDEVRGLKGFFHLSAGGHR--RVVIVDSADEMNPSAANALLKELEEPPEGAVLFLIS 184
Query: 570 NSISRVIPAIRSRCLTI 620
+ S ++P IRSRC T+
Sbjct: 185 HRPSGLLPTIRSRCRTL 201
>UniRef50_Q0VQM5 Cluster: DNA polymerase III, delta prime subunit;
n=1; Alcanivorax borkumensis SK2|Rep: DNA polymerase
III, delta prime subunit - Alcanivorax borkumensis
(strain SK2 / ATCC 700651 / DSM 11573)
Length = 335
Score = 44.0 bits (99), Expect = 0.003
Identities = 42/173 (24%), Positives = 79/173 (45%), Gaps = 3/173 (1%)
Frame = +3
Query: 126 YHKEQAVRLKNLVQQSDFPH-LLIYGPSGAGKKTRVMCLLRELYGSGVERLRQETMNFTT 302
+H + +L + + PH LL+ GP G GK LR L S + L E +
Sbjct: 14 WHSDAMAQLLDQHARGRLPHALLLSGPKGIGK-------LR-LAESLAQTLLCEKPSAGL 65
Query: 303 PSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQ--THQIDSNGQREFKVVIL 476
P ++ H ++ + + +D V+ + T +G ++V I+
Sbjct: 66 PCGHCQGCQLSTAGTHPDLYRLSPEEKSKTIKIDQVRKLVAFATRTAQYSG---YRVAII 122
Query: 477 NEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAP 635
+ + L ++AQ+AL +T+E+ L+L+++ + ++P IRSRC +P P
Sbjct: 123 SPAEALNRNAQNALLKTLEEPGTQTLLLLVSDQPTLLLPTIRSRCQQRILPLP 175
>UniRef50_A6BZZ4 Cluster: DNA polymerase III, tau/gamma subunit;
n=1; Planctomyces maris DSM 8797|Rep: DNA polymerase
III, tau/gamma subunit - Planctomyces maris DSM 8797
Length = 353
Score = 44.0 bits (99), Expect = 0.003
Identities = 18/53 (33%), Positives = 35/53 (66%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTI 620
++ I+++ D + ++ +AL +T+E+ A +ILIA+ + ++P IRSRC I
Sbjct: 125 RIAIIDDADKMNAESANALLKTLEEPSANYLMILIASELDAILPTIRSRCQLI 177
>UniRef50_O75943 Cluster: Cell cycle checkpoint protein RAD17; n=34;
Euteleostomi|Rep: Cell cycle checkpoint protein RAD17 -
Homo sapiens (Human)
Length = 681
Score = 44.0 bits (99), Expect = 0.003
Identities = 42/180 (23%), Positives = 83/180 (46%), Gaps = 14/180 (7%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPH--------LLIYGPSGAGKKTRVMCL 239
WVDK++P+ +L HK++ ++ ++ LLI GP G GK T + L
Sbjct: 91 WVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKIL 150
Query: 240 LRELYGSGVERLRQETMNFTTPSNKKIE---IMTVSSNYHIEVNPTDVGIHDRVVIMDLV 410
+E +G V QE +N P +K + + S++H+ + + + ++
Sbjct: 151 SKE-HGIQV----QEWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQIAVFKEFLLRATK 205
Query: 411 KNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYV--ATCRLI-LIANSIS 581
N Q + + + + K++++ ++ + H L + KYV C LI +I++S+S
Sbjct: 206 YNKLQ--MLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLIFIISDSLS 263
>UniRef50_A6GP69 Cluster: DNA-directed DNA polymerase; n=1;
Limnobacter sp. MED105|Rep: DNA-directed DNA polymerase
- Limnobacter sp. MED105
Length = 318
Score = 43.6 bits (98), Expect = 0.004
Identities = 16/58 (27%), Positives = 36/58 (62%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAP 635
+ V++ D++ + +AL +T+E+ R +L+ + + +++P IRSRC +++P P
Sbjct: 124 RYVVVYPFDNMNANTANALLKTLEEPANGLRFVLVGSRVDKLLPTIRSRCQELTMPMP 181
>UniRef50_A0Z287 Cluster: DNA polymerase III subunit delta; n=1;
marine gamma proteobacterium HTCC2080|Rep: DNA
polymerase III subunit delta - marine gamma
proteobacterium HTCC2080
Length = 322
Score = 43.6 bits (98), Expect = 0.004
Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 1/164 (0%)
Frame = +3
Query: 147 RLKNLVQQSDFPH-LLIYGPSGAGKKTRVMCLLRELYGSGVERLRQETMNFTTPSNKKIE 323
RL +L QQ PH +L+ G G GK +L S L E P
Sbjct: 24 RLSSLEQQEKLPHAILLTGARGLGKT--------QLAASFATGLLCEARG-VEPCGSCAS 74
Query: 324 IMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKD 503
H + R + +D +++ A T ++G KV+++ + +T
Sbjct: 75 CQLAGGGAHGDFRWIAPEEGKRAIGVDAIRS-AVTFMQQTSGYGSHKVLVIEPAEAMTAA 133
Query: 504 AQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAP 635
A +AL +T+E+ LIL+++ + +RSRC ++P P
Sbjct: 134 AANALLKTLEEPPGKALLILVSHRSGELPATVRSRCQRYNLPHP 177
>UniRef50_Q8XHN4 Cluster: DNA polymerase III delta' subunit; n=3;
Clostridium perfringens|Rep: DNA polymerase III delta'
subunit - Clostridium perfringens
Length = 307
Score = 43.2 bits (97), Expect = 0.006
Identities = 24/72 (33%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Frame = +3
Query: 399 MDLVKNV-AQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANS 575
+DLV+N+ A+ ++ R KV+I++ + LT AQ+AL +T+E+ + +I+++++
Sbjct: 69 VDLVRNIIAEANKKPYECDR--KVIIIHNGEKLTVAAQNALLKTIEEPLTGIFIIILSSN 126
Query: 576 ISRVIPAIRSRC 611
I ++ IRSRC
Sbjct: 127 IDSILETIRSRC 138
>UniRef50_Q2GE30 Cluster: Putative uncharacterized protein; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: Putative
uncharacterized protein - Neorickettsia sennetsu (strain
Miyayama)
Length = 266
Score = 43.2 bits (97), Expect = 0.006
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Frame = +3
Query: 321 EIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS--NGQREF---KVVILNEV 485
++ ++ Y + +D I D ++I + VA +I N F K++I++
Sbjct: 28 DMFEIAIRYAKWILKSDEAIGDLMIIQERSIKVAHIQRIHDFLNLTSNFSNQKIIIISHF 87
Query: 486 DDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAPPXNLKL 653
+ +T A +AL + +E+ T LILIA + ++ +RSRC + P N ++
Sbjct: 88 EIMTAGAANALLKVLEEGKQTATLILIARYLQQITNTVRSRCFHLYFPPLKENTEI 143
>UniRef50_A6LPM5 Cluster: DNA polymerase III delta' subunit; n=1;
Clostridium beijerinckii NCIMB 8052|Rep: DNA polymerase
III delta' subunit - Clostridium beijerinckii NCIMB 8052
Length = 310
Score = 43.2 bits (97), Expect = 0.006
Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Frame = +3
Query: 399 MDLVKNV-AQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANS 575
+D V+N+ ++ ++ G + KV+IL + D LT AQ+AL +T+E+ LIL+++S
Sbjct: 72 VDDVRNIISEVNKKPYEGDK--KVLILYKCDKLTVQAQNALLKTIEEPPRGVHLILLSDS 129
Query: 576 ISRVIPAIRSRC 611
+ ++ I+SRC
Sbjct: 130 LEVILDTIKSRC 141
>UniRef50_A4BMM6 Cluster: DNA polymerase III, delta prime subunit;
n=1; Nitrococcus mobilis Nb-231|Rep: DNA polymerase III,
delta prime subunit - Nitrococcus mobilis Nb-231
Length = 357
Score = 43.2 bits (97), Expect = 0.006
Identities = 20/63 (31%), Positives = 37/63 (58%)
Frame = +3
Query: 459 FKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAPP 638
++V +++ D +T A ++L +T+E+ A LIL+A S++ +RSRC + + PP
Sbjct: 116 YRVTLVDPADRMTLAAANSLLKTLEEPPAAAVLILVARQFSQLPATLRSRCRLVQLQPPP 175
Query: 639 XNL 647
L
Sbjct: 176 AVL 178
>UniRef50_A4B798 Cluster: DNA polymerase III subunit delta; n=1;
Alteromonas macleodii 'Deep ecotype'|Rep: DNA polymerase
III subunit delta - Alteromonas macleodii 'Deep ecotype'
Length = 295
Score = 43.2 bits (97), Expect = 0.006
Identities = 29/104 (27%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
Frame = +3
Query: 342 NYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALR 521
++HI + +G+ D+ I + + ++ T Q+ N KV+++ + D +T+ A +AL
Sbjct: 75 DFHILESEKQLGV-DK--IREGIAKLSGTAQMGGN-----KVLLIPKADTMTEAAANALL 126
Query: 522 RTMEKYVATCRLILIANSISRVIPAIRSRC--LTISVPAPPXNL 647
+T+E+ L+LI +S+++++P I SRC +S+P+ +L
Sbjct: 127 KTLEEPTNNTFLLLITDSVNKLMPTILSRCERQVLSLPSVSESL 170
>UniRef50_A3ISF6 Cluster: DNA-directed DNA polymerase; n=3;
Cyanobacteria|Rep: DNA-directed DNA polymerase -
Cyanothece sp. CCY 0110
Length = 692
Score = 43.2 bits (97), Expect = 0.006
Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 1/174 (0%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLV-QQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSGVE 269
K+RP+ L + A L N + Q P L GP G GK + L + L VE
Sbjct: 16 KYRPQTFADLVGQEAIATTLSNAIASQRIAPAYLFTGPRGTGKTSSARILAKSLNCLAVE 75
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
+ P + ++ ++V D + V D ++ + + Q +
Sbjct: 76 ------VPTAAPCGQCEVCRAITRGSALDVIEIDAASNTGV---DNIREIIERSQF-APV 125
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
Q +KV +++E L+ A +AL +T+E+ +L RV+P I SRC
Sbjct: 126 QCRYKVYVIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTILSRC 179
>UniRef50_A2BZ44 Cluster: DNA polymerase, gamma and tau subunits;
n=5; Prochlorococcus marinus|Rep: DNA polymerase, gamma
and tau subunits - Prochlorococcus marinus (strain MIT
9515)
Length = 595
Score = 43.2 bits (97), Expect = 0.006
Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 1/174 (0%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKN-LVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSGVE 269
K+RP +L +L + ++ LK L+ + P L GP G GK + + L E
Sbjct: 11 KYRPSNLDELVGQEFISITLKQALISKKIAPAYLFNGPRGTGKTSSARIFAKSLNCLSCE 70
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
Q T N P K ++ +++ D + V D ++ + +
Sbjct: 71 ---QPTAN---PCGKCELCKQIADGNALDIIEIDAASNTGV---DNIREIIDGARFTPT- 120
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
Q +KV +++E L+ A +AL +T+E+ IL + RVI I+SRC
Sbjct: 121 QARWKVYVIDECHMLSTAASNALLKTIEEPPERVVFILATTNPERVINTIQSRC 174
>UniRef50_A1AWB5 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; sulfur-oxidizing symbionts|Rep: DNA polymerase
III, subunits gamma and tau - Ruthia magnifica subsp.
Calyptogena magnifica
Length = 529
Score = 43.2 bits (97), Expect = 0.006
Identities = 39/179 (21%), Positives = 78/179 (43%), Gaps = 1/179 (0%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPH-LLIYGPSGAGKKTRVMCLLRELYGSGVE 269
K+RP +KL L N + ++ H L G G GK T L + +
Sbjct: 11 KYRPHSFVKLVGQTHTKKTLINALDANNLHHGFLFTGTRGVGKTTIARILAKSI------ 64
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
E + P +K + + I++ D H V D ++++ + Q +
Sbjct: 65 --NCEQGISSKPCDKCATCVEIDKGQSIDLIELDAASHTGV---DNMRDILENAQYMPSK 119
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISV 626
R +K+ +++EV L+K++ +AL +T+E+ + +L+ ++ + SRCL ++
Sbjct: 120 NR-YKIYLIDEVHMLSKNSFNALLKTLEEPPEHVKFLLVTTDPQKLPVTVLSRCLQFTL 177
>UniRef50_UPI0000E0FA0C Cluster: DNA polymerase III subunit delta;
n=1; alpha proteobacterium HTCC2255|Rep: DNA polymerase
III subunit delta - alpha proteobacterium HTCC2255
Length = 298
Score = 42.7 bits (96), Expect = 0.007
Identities = 19/53 (35%), Positives = 33/53 (62%)
Frame = +3
Query: 453 REFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
R+ K++I+ D +T+ A +AL +T+E+ L+L + I R++P I SRC
Sbjct: 105 RQRKILIIEHADTMTESAANALLKTLEEPSLNTFLLLTVSDIQRLLPTILSRC 157
>UniRef50_Q2Y982 Cluster: DNA polymerase III, delta prime subunit;
n=1; Nitrosospira multiformis ATCC 25196|Rep: DNA
polymerase III, delta prime subunit - Nitrosospira
multiformis (strain ATCC 25196 / NCIMB 11849)
Length = 368
Score = 42.7 bits (96), Expect = 0.007
Identities = 22/83 (26%), Positives = 44/83 (53%)
Frame = +3
Query: 387 RVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILI 566
R + + ++ + I S+ Q +K+++++ + ++ A AL + +E+ ILI
Sbjct: 126 RQISISQIRELGDFVNITSH-QNGYKIILIHPAETMSTAAASALLKNLEEPPLQTLFILI 184
Query: 567 ANSISRVIPAIRSRCLTISVPAP 635
+ ++P IRSRC I +PAP
Sbjct: 185 THQAQYLLPTIRSRCRQIIMPAP 207
>UniRef50_Q1Q394 Cluster: Similar to DNA polymerase III subunit
gamma/tau; n=1; Candidatus Kuenenia stuttgartiensis|Rep:
Similar to DNA polymerase III subunit gamma/tau -
Candidatus Kuenenia stuttgartiensis
Length = 558
Score = 42.7 bits (96), Expect = 0.007
Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 1/174 (0%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVE 269
++RP+ + L N ++ H ++ GP G GK + L + L
Sbjct: 9 RYRPQTFSDIVGQAPIVKTLGNAIRTDRVAHAYLFAGPRGVGKTSTARILSKAL-----N 63
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
+ T TP N ++S I+V D G +R + D ++N+ Q +
Sbjct: 64 CVNGPT---DTPCNVCNICQSISEGSDIDVLEID-GASNRGI--DEIRNIRQNVGFAPSR 117
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
R +++ I++EV LT++A +AL +T+E+ + + I + +R+ ++SRC
Sbjct: 118 AR-YRIYIIDEVHMLTREAFNALLKTLEEPPSHVKFIFATTAANRLPETVQSRC 170
>UniRef50_Q0B0W5 Cluster: DNA-directed DNA polymerase; n=1;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
DNA-directed DNA polymerase - Syntrophomonas wolfei
subsp. wolfei (strain Goettingen)
Length = 499
Score = 42.7 bits (96), Expect = 0.007
Identities = 41/173 (23%), Positives = 85/173 (49%), Gaps = 2/173 (1%)
Frame = +3
Query: 99 RPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVERL 275
RP+ ++ ++ L+N V++ H ++ GP G GK T + ++ + +
Sbjct: 11 RPRRFAEVVGQEKTVTALRNAVREGKLSHAYLFSGPRGTGK-TSIAKII-------AKAV 62
Query: 276 RQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQR 455
E ++ P N+ +++ ++V D + + D ++++ + ++ Q
Sbjct: 63 NCENLSEGEPCNQCSSCQDINNGNFMDVIEIDAASNRGI---DEIRDLREKVRV-LPAQG 118
Query: 456 EFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPA-IRSRC 611
+ KV I++EV LT +A +AL +T+E+ + ++A + S IPA IRSRC
Sbjct: 119 KNKVYIIDEVHMLTTEAFNALLKTIEE-PPDAVIFILATTESHKIPATIRSRC 170
>UniRef50_A7INF3 Cluster: DNA-directed DNA polymerase; n=1;
Xanthobacter autotrophicus Py2|Rep: DNA-directed DNA
polymerase - Xanthobacter sp. (strain Py2)
Length = 347
Score = 42.7 bits (96), Expect = 0.007
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 4/173 (2%)
Frame = +3
Query: 102 PKDLMKLDYHKEQAVRLKNLVQQSDFPH-LLIYGPSGAGKKTRVMCLLRELYGSGVERLR 278
P+D +L H L + PH LLI GP G GK T L R + G E
Sbjct: 20 PRDQARLFGHGVVEADLIGDFRAGRLPHALLIGGPEGIGKATLAYRLARMVLSGGPEAGS 79
Query: 279 QET-MNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHD--RVVIMDLVKNVAQTHQIDSNG 449
+ T P +++ + + P + G V+ ++V+ V +
Sbjct: 80 HSLDLPVTHPVFRQVASQSHPDLLVLHRVP-EAGEEKIPTVIPAEMVRRVRSFFGATA-A 137
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSR 608
++V I++ VD+L +AL +T+E+ +LI+++ RV+P IRSR
Sbjct: 138 AGGWRVCIVDAVDELNPFGANALLKTLEEPPPRALFLLISHAPGRVLPTIRSR 190
>UniRef50_A4XJ39 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Caldicellulosiruptor saccharolyticus DSM
8903|Rep: DNA polymerase III, subunits gamma and tau -
Caldicellulosiruptor saccharolyticus (strain ATCC 43494
/ DSM 8903)
Length = 535
Score = 42.7 bits (96), Expect = 0.007
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 1/174 (0%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVE 269
K+RPK + + LKN ++Q H I+ GP G GK T + R V
Sbjct: 8 KYRPKVFEDVVAQEHITKTLKNQIKQDKVAHAYIFTGPRGTGKTTTAKIMAR-----AVN 62
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
L + N P N+ ++ + ++V D + V + +++ + S
Sbjct: 63 CLNPKDGN---PCNECEVCQSILNEKTLDVLEIDAASNTSVNDVRQIRD--EVRYPPSMC 117
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
+R +V I++EV L+ A +AL +T+E+ A IL I +V I SRC
Sbjct: 118 KR--RVYIIDEVHMLSTGAFNALLKTLEEPPAHALFILATTDIQKVPATILSRC 169
>UniRef50_Q601S8 Cluster: DNA polymerase III gamma-tau subunits;
n=5; Mycoplasma hyopneumoniae|Rep: DNA polymerase III
gamma-tau subunits - Mycoplasma hyopneumoniae (strain
232)
Length = 726
Score = 42.3 bits (95), Expect = 0.010
Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 1/173 (0%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVE 269
K+RPK + K LKN+++ +F H ++ GP G GK T + +
Sbjct: 18 KYRPKKFSDIVGQKFLLESLKNIIKSGNFFHAYLFSGPHGTGKTTVAKIFANAINCTHKT 77
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
L + N N ++I+ + + H V I ++++N QI
Sbjct: 78 DLIEPCQNCIKNFNNSLDIIEMDAASHNGVKE----------IREIIENSINFPQIS--- 124
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSR 608
+K+ IL+EV L+ A +A +T+E+ IL + ++ I SR
Sbjct: 125 --PYKIYILDEVHMLSTSAFNAFLKTLEEPPKHMIFILATTEVHKIPLTILSR 175
>UniRef50_Q1H170 Cluster: DNA polymerase III, delta prime subunit;
n=1; Methylobacillus flagellatus KT|Rep: DNA polymerase
III, delta prime subunit - Methylobacillus flagellatus
(strain KT / ATCC 51484 / DSM 6875)
Length = 334
Score = 42.3 bits (95), Expect = 0.010
Identities = 19/76 (25%), Positives = 41/76 (53%)
Frame = +3
Query: 408 VKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRV 587
++ +A ++ S+ +VV+++ D L + + +AL + +E+ A IL+ + +
Sbjct: 109 IRELAGFLELSSHQSHGMRVVVIHPADALNQTSANALLKMLEEPPADVMFILVTSHPQSL 168
Query: 588 IPAIRSRCLTISVPAP 635
+P I SRC + +P P
Sbjct: 169 LPTIMSRCQQLEMPVP 184
>UniRef50_A3YHR7 Cluster: DNA polymerase III subunit delta; n=1;
Marinomonas sp. MED121|Rep: DNA polymerase III subunit
delta - Marinomonas sp. MED121
Length = 322
Score = 42.3 bits (95), Expect = 0.010
Identities = 21/58 (36%), Positives = 37/58 (63%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAP 635
KVVIL + + +A +A+ + +E+ + IL A++ S++I +RSRCL I++P P
Sbjct: 114 KVVILAQAASMNINAANAVLKALEEPPSGTYFILTADASSQLIATVRSRCLLINLPEP 171
>UniRef50_A3Y409 Cluster: DNA polymerase III subunit delta; n=3;
Vibrionales|Rep: DNA polymerase III subunit delta -
Vibrio sp. MED222
Length = 321
Score = 42.3 bits (95), Expect = 0.010
Identities = 18/58 (31%), Positives = 35/58 (60%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAP 635
+V++L+ + + + A +AL +T+E+ + C IL + +R++P I SRC +V P
Sbjct: 110 RVILLSPAEAMNESASNALLKTLEEPASNCIFILSTRNSNRLMPTILSRCQQFNVVCP 167
>UniRef50_Q1GV06 Cluster: DNA polymerase III, subunits gamma and
tau; n=6; Sphingomonadales|Rep: DNA polymerase III,
subunits gamma and tau - Sphingopyxis alaskensis
(Sphingomonas alaskensis)
Length = 565
Score = 41.9 bits (94), Expect = 0.013
Identities = 38/174 (21%), Positives = 76/174 (43%), Gaps = 1/174 (0%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPH-LLIYGPSGAGKKTRVMCLLRELYGSGVE 269
K+RP+ +L L N + + H L+ G G GK + + + L G +
Sbjct: 35 KYRPQTFAELIGQDAMVKTLGNAIARDRLAHAFLMTGVRGVGKTSTARLIAKALNCIGPD 94
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
T++ P ++ HI+V D + V D V+ + + + +
Sbjct: 95 GQGGPTID---PCGVCEPCRAITEGRHIDVIEMDAASNTGV---DDVREIIEAVRYAAVS 148
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
R +K+ I++EV L+++A +AL +T+E+ + + +++V + SRC
Sbjct: 149 AR-YKIYIIDEVHMLSRNAFNALLKTLEEPPPHVKFLFATTEVNKVPVTVLSRC 201
>UniRef50_Q1D8K6 Cluster: DNA polymerase III, delta' subunit; n=2;
Cystobacterineae|Rep: DNA polymerase III, delta' subunit
- Myxococcus xanthus (strain DK 1622)
Length = 344
Score = 41.9 bits (94), Expect = 0.013
Identities = 18/50 (36%), Positives = 32/50 (64%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
KV ++ + AQ+A +T+E+ + +IL+A++I R++P IRSRC
Sbjct: 127 KVALIVSAQTMNVQAQNAFLKTLEEPPSDTTIILVASAIDRLLPTIRSRC 176
>UniRef50_A7CST5 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Opitutaceae bacterium TAV2|Rep: DNA polymerase
III, subunits gamma and tau - Opitutaceae bacterium TAV2
Length = 388
Score = 41.9 bits (94), Expect = 0.013
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 3/175 (1%)
Frame = +3
Query: 132 KEQAVR-LKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVERLRQETMNFTTP 305
++ VR LKN + ++ H ++ GP G GK + ++ + +F P
Sbjct: 24 QDHVVRTLKNAIARNRIAHAYLFVGPRGTGKTSTA-----RIFAKALNCTDGPKADFD-P 77
Query: 306 SNKKIEIMTVSSNYH-IEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNE 482
++ ++ +T ++ IE++ D+ I DL +V Q +FK+ I++E
Sbjct: 78 ADPAVKSITDGTSMDVIEIDGASNNSVDQ--IRDLRDDVRYAPT-----QGKFKIYIIDE 130
Query: 483 VDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAPPXNL 647
V L+ A +AL +T+E+ + + + +V+P I SRC + P +L
Sbjct: 131 VHMLSTAAFNALLKTLEEPPEHVKFVFATTDVQKVLPTILSRCQRFDLKPIPDDL 185
>UniRef50_A6DLE8 Cluster: DNA polymerase III, gamma and tau
subunits; n=1; Lentisphaera araneosa HTCC2155|Rep: DNA
polymerase III, gamma and tau subunits - Lentisphaera
araneosa HTCC2155
Length = 890
Score = 41.9 bits (94), Expect = 0.013
Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 1/186 (0%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVE 269
K RP+ L L N ++ H I+ G G GK T + L E
Sbjct: 9 KWRPQTFDDLAGQDHITSTLTNAIRNQRVGHAYIFVGTRGIGKTTSARIFAKAL---NCE 65
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
R + P + ++ I+V D ++ V D ++ + + Q +
Sbjct: 66 TPRADL----NPCGQCTNCTEITQGSSIDVIEIDGASNNSV---DDIRQIREGAQY-TPA 117
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVP 629
+ +K+ I++EV L+ A +AL +T+E+ + + + RV+P I SRC + +
Sbjct: 118 RCPYKIFIIDEVHMLSNAAWNALLKTLEEPPPHIKFLFATTEVHRVLPTILSRCQRLELK 177
Query: 630 APPXNL 647
P N+
Sbjct: 178 PIPRNV 183
>UniRef50_UPI0000E87FCE Cluster: DNA-directed DNA polymerase; n=1;
Methylophilales bacterium HTCC2181|Rep: DNA-directed DNA
polymerase - Methylophilales bacterium HTCC2181
Length = 544
Score = 41.5 bits (93), Expect = 0.017
Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 1/179 (0%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVE 269
K RPK L + + N + Q+ H ++ G G GK T L + L E
Sbjct: 9 KWRPKSFDTLIGQESAVQAIANALDQNRLHHAYLFNGTRGIGKTTIARILAKSL---NCE 65
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
+ T + ++I++ ++ ++ G+ + + DL++N S+G
Sbjct: 66 QGISSKPCLTCSACQEIDVGRYVDLIELDA-ASNTGVDNMI---DLLENAQYA---PSSG 118
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISV 626
+ FKV I++EV L+K A +A+ +T+E+ + IL +V + SRCL ++
Sbjct: 119 R--FKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTEPQKVPITVLSRCLQFNL 175
>UniRef50_Q3SIN0 Cluster: DNA polymerase III delta prime subunit;
n=1; Thiobacillus denitrificans ATCC 25259|Rep: DNA
polymerase III delta prime subunit - Thiobacillus
denitrificans (strain ATCC 25259)
Length = 327
Score = 41.5 bits (93), Expect = 0.017
Identities = 19/59 (32%), Positives = 34/59 (57%)
Frame = +3
Query: 459 FKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAP 635
++VV+++ D L A +AL + +E+ +L+A+ R++P IRSRC + V P
Sbjct: 118 YRVVLVDPADSLNLAAANALLKVLEEPPLNTVFVLVADQPRRLLPTIRSRCTRLDVGLP 176
>UniRef50_Q3A8S0 Cluster: Putative DNA polymerase III, gamma/tau
subunits; n=1; Carboxydothermus hydrogenoformans
Z-2901|Rep: Putative DNA polymerase III, gamma/tau
subunits - Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008)
Length = 511
Score = 41.5 bits (93), Expect = 0.017
Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 1/174 (0%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVE 269
K RPK ++ + LKN V H ++ GP G GK T L + + +
Sbjct: 8 KWRPKTFSEIVGQETIVKILKNAVATMQVAHAYLFSGPRGTGKTTTAKVLAKAV--NCEH 65
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
+ E N PS I ++ + + I+ ++ GI + + + +K V
Sbjct: 66 PVEGEPCN-QCPSCIGINNQSLLNVFEIDA-ASNRGIDEIRELRESIKLVP--------A 115
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
Q ++KV I++EV LT +A +AL +T+E+ IL ++V I SRC
Sbjct: 116 QGKYKVYIIDEVHMLTNEAFNALLKTLEEPPEHVIFILATTEFNKVPVTIVSRC 169
>UniRef50_Q2RMH2 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Clostridia|Rep: DNA polymerase III, subunits
gamma and tau - Moorella thermoacetica (strain ATCC
39073)
Length = 589
Score = 41.5 bits (93), Expect = 0.017
Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 1/172 (0%)
Frame = +3
Query: 99 RPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVERL 275
RP+ ++ + L+N ++ H ++ GP G GK + L R +
Sbjct: 12 RPRTFAEVVGQEHITRTLRNALRTGRLVHAYLFCGPRGTGKTSTAKILARAINCLAPRE- 70
Query: 276 RQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQR 455
P N+ + + ++V D + + D ++N+ + + R
Sbjct: 71 -------GEPCNECANCRRILAGNSLDVLEMDAASNRGI---DEIRNLIEKIPLGPVEGR 120
Query: 456 EFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
+KV I++EV LT++A +AL +T+E+ A IL +V+P I SRC
Sbjct: 121 -YKVYIIDEVHMLTQEAFNALLKTLEEPPAHAVFILATTEPRKVLPTILSRC 171
>UniRef50_A5D6B1 Cluster: DNA polymerase III, gamma/tau subunits;
n=2; Peptococcaceae|Rep: DNA polymerase III, gamma/tau
subunits - Pelotomaculum thermopropionicum SI
Length = 558
Score = 41.5 bits (93), Expect = 0.017
Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 1/172 (0%)
Frame = +3
Query: 99 RPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVERL 275
RP+ ++ + LKN V+ H I+ G G GK T L + L +G E
Sbjct: 11 RPRTFGEIIGQEHITRTLKNAVEAGRVGHAYIFCGARGTGKTTAAKVLAKALNCTGREGA 70
Query: 276 RQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQR 455
P N+ V+ ++V D + + D ++++ + + R
Sbjct: 71 E--------PCNRCESCRAVNEGISVDVIEIDAASNRGI---DEIRDLREKIRFAPAAGR 119
Query: 456 EFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
++V I++EV LT +A +AL +T+E+ LIL RV I SRC
Sbjct: 120 -YRVYIIDEVHMLTSEAFNALLKTLEEPPRHAVLILATTEPHRVPLTILSRC 170
>UniRef50_Q87N27 Cluster: DNA polymerase III, delta prime subunit;
n=8; Vibrio|Rep: DNA polymerase III, delta prime subunit
- Vibrio parahaemolyticus
Length = 320
Score = 41.1 bits (92), Expect = 0.023
Identities = 16/58 (27%), Positives = 35/58 (60%)
Frame = +3
Query: 438 DSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
+S+ +++ ++ D + + A +AL +T+E+ C +L+ ++ R++P IRSRC
Sbjct: 102 ESSQLNGYRLFVIEPADAMNESASNALLKTLEEPGEKCLFLLVTHNQERLLPTIRSRC 159
>UniRef50_Q4FNB0 Cluster: DNA-directed DNA polymerase gamma/tau
subunit; n=2; Candidatus Pelagibacter ubique|Rep:
DNA-directed DNA polymerase gamma/tau subunit -
Pelagibacter ubique
Length = 557
Score = 41.1 bits (92), Expect = 0.023
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 2/175 (1%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGS-GV 266
K+RP+ L A + N ++ + P+ ++ G G GK T + + L S G+
Sbjct: 11 KYRPQTFNDLIGQDVVAETISNSIKANKVPNAYLFTGIRGIGKTTTARIVAKSLNCSNGI 70
Query: 267 ERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSN 446
+ L +E + + +S++ HI+V D V D V+++ + +
Sbjct: 71 DNLCKEELCENCNA--------ISNSNHIDVLEMDAASKTGV---DDVRDLIEFSRYGPT 119
Query: 447 GQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
+ +K+ I++EV L+K A +AL +T+E+ + I I ++ + SRC
Sbjct: 120 TAK-YKIFIIDEVHMLSKQAFNALLKTLEEPPEYLKFIFATTEIKKIPITVVSRC 173
>UniRef50_O67707 Cluster: DNA polymerase III gamma subunit; n=3;
Aquifex aeolicus|Rep: DNA polymerase III gamma subunit -
Aquifex aeolicus
Length = 473
Score = 41.1 bits (92), Expect = 0.023
Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 2/178 (1%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVR-LKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGV 266
K+RPK ++ +E VR LKN ++ H ++ GP G GK T L + L
Sbjct: 9 KYRPKFFREV-IGQEAPVRILKNAIKNDRVAHAYLFAGPRGVGKTTIARILAKALNCKNP 67
Query: 267 ERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSN 446
+ P + + ++ D + + + +K I
Sbjct: 68 SK--------GEPCGECENCREIDRGVFPDLIEMDAASNRGIDDVRALKEAVNYKPIKG- 118
Query: 447 GQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTI 620
++KV I++E LTK+A +AL +T+E+ +L +++P I SRC I
Sbjct: 119 ---KYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTVFVLCTTEYDKILPTILSRCQRI 173
>UniRef50_Q0C177 Cluster: Putative DNA polymerase III, delta prime
subunit; n=1; Hyphomonas neptunium ATCC 15444|Rep:
Putative DNA polymerase III, delta prime subunit -
Hyphomonas neptunium (strain ATCC 15444)
Length = 311
Score = 41.1 bits (92), Expect = 0.023
Identities = 36/150 (24%), Positives = 72/150 (48%), Gaps = 4/150 (2%)
Frame = +3
Query: 189 LIYGPSGAGKKTRVMCLLRELYGSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPT 368
LI GPSG GK + L G+ F P++ + ++ N H ++N
Sbjct: 31 LIEGPSGVGKARVAERIAAYLLGAR----GPAAAPFDAPADDPVMRAILAGN-HPDMNVQ 85
Query: 369 DVGIHDR-VVIMDL-VKNVAQTHQIDSN--GQREFKVVILNEVDDLTKDAQHALRRTMEK 536
++D+ + D+ V+ + Q S ++V I++ +D+ +++ +AL +T+E+
Sbjct: 86 RRELNDKGKLTQDITVEQIRQVGHFFSMKPAMGGWRVGIVDAIDEANRNSANALLKTLEE 145
Query: 537 YVATCRLILIANSISRVIPAIRSRCLTISV 626
A L+L+ + ++P IRSRC + +
Sbjct: 146 PPAQSILLLVNHRSRPILPTIRSRCRVLQL 175
>UniRef50_Q6J2Q0 Cluster: Gp44; n=1; Acinetobacter phage 133|Rep:
Gp44 - Acinetobacter phage 133
Length = 319
Score = 41.1 bits (92), Expect = 0.023
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +3
Query: 399 MDLVKNVAQTHQIDSNGQREFKVVILNEVD-DLTKDAQHALRRTMEKYVATCRLILIANS 575
+D V+ T + KV++++E D + +DAQ +R ME Y C +I+ AN+
Sbjct: 82 IDFVRGPLTTFASSLSNDGRPKVIVIDEFDRNGLQDAQLHMRTFMEAYGDNCSVIITANN 141
Query: 576 ISRVIPAIRSRCLTISVPAP 635
+ ++ +RSR I P
Sbjct: 142 LEGIVKPLRSRSRVIKFGTP 161
>UniRef50_Q98RF6 Cluster: DNA POLYMERASE III SUBUNITS GAMMA AND TAU;
n=1; Mycoplasma pulmonis|Rep: DNA POLYMERASE III
SUBUNITS GAMMA AND TAU - Mycoplasma pulmonis
Length = 297
Score = 40.7 bits (91), Expect = 0.030
Identities = 18/58 (31%), Positives = 34/58 (58%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAP 635
K++I+ +++ +K +AL +T+E+ ++L+ N+ +I IRSRC I V P
Sbjct: 90 KILIIKDIEKSSKQMINALLKTLEEPSPNVVILLVTNNFHSIISTIRSRCQIIGVNQP 147
>UniRef50_Q899F8 Cluster: DNA polymerase III delta subunit; n=1;
Clostridium tetani|Rep: DNA polymerase III delta subunit
- Clostridium tetani
Length = 322
Score = 40.7 bits (91), Expect = 0.030
Identities = 17/54 (31%), Positives = 34/54 (62%)
Frame = +3
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
+ + KV+I+ D +TK+AQ+A +T+E+ +++I S+ ++ I+SRC
Sbjct: 97 EEDKKVIIIYNSDLMTKEAQNAFLKTIEEPPENVFILMICESLDNILETIKSRC 150
>UniRef50_Q6F0E2 Cluster: DNA polymerase III delta' subunit; n=1;
Mesoplasma florum|Rep: DNA polymerase III delta' subunit
- Mesoplasma florum (Acholeplasma florum)
Length = 247
Score = 40.7 bits (91), Expect = 0.030
Identities = 20/71 (28%), Positives = 40/71 (56%)
Frame = +3
Query: 408 VKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRV 587
V + Q + +N +FKV +L+ ++L ++ ++L + +E+ IL+ + S+V
Sbjct: 85 VVELMQKFSLTTNEVNKFKVYVLSNAENLKNESANSLLKFIEEPPENTIAILLTKNKSQV 144
Query: 588 IPAIRSRCLTI 620
+P I+SRC I
Sbjct: 145 LPTIKSRCKLI 155
>UniRef50_Q5P0G2 Cluster: DNA-directed DNA polymerase III, delta
subunit; n=2; Azoarcus|Rep: DNA-directed DNA polymerase
III, delta subunit - Azoarcus sp. (strain EbN1)
(Aromatoleum aromaticum (strain EbN1))
Length = 353
Score = 40.7 bits (91), Expect = 0.030
Identities = 18/85 (21%), Positives = 49/85 (57%)
Frame = +3
Query: 393 VIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIAN 572
++++ ++++ Q+ + + Q +V++++ + + +AL + +E+ A C +L+++
Sbjct: 109 IVIEQIRDLQQSLSVTGH-QSGRRVIVVDPAEAMNPYTANALLKLLEEPPAGCLFVLVSS 167
Query: 573 SISRVIPAIRSRCLTISVPAPPXNL 647
+ R++P IRSRC S P ++
Sbjct: 168 APRRLLPTIRSRCQQWSFSQPATDV 192
>UniRef50_Q5FHH2 Cluster: DNA polymerase III subunit gamma; n=5;
canis group|Rep: DNA polymerase III subunit gamma -
Ehrlichia ruminantium (strain Gardel)
Length = 296
Score = 40.7 bits (91), Expect = 0.030
Identities = 20/85 (23%), Positives = 50/85 (58%)
Frame = +3
Query: 372 VGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATC 551
+G ++ ++ ++ ++N+ + S + K+VI++ +D+L +A +A+ + +E+
Sbjct: 60 IGDNEGIIGIEKIRNIKNFLYL-STARSHNKIVIIDSIDNLNINATNAILKILEEPPNNS 118
Query: 552 RLILIANSISRVIPAIRSRCLTISV 626
+ILI++++ V IRSRC + +
Sbjct: 119 IIILISHNLHAVPVVIRSRCFLLGL 143
>UniRef50_Q2BG76 Cluster: DNA polymerase III subunit delta; n=1;
Neptuniibacter caesariensis|Rep: DNA polymerase III
subunit delta - Neptuniibacter caesariensis
Length = 295
Score = 40.7 bits (91), Expect = 0.030
Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 3/176 (1%)
Frame = +3
Query: 135 EQAVRLKNLVQQSDFPH-LLIYGPSGAGKKTRVMCLLRELYGSGVERLRQETMNFTTPSN 311
E+ L L +Q PH LLI+G G GK + L +Q
Sbjct: 13 ERNKHLAELHRQKRLPHALLIHGMQGIGKALFAKSFAQMLL------CQQPESGKACGVC 66
Query: 312 KKIEIMTVSSNYHIEV-NPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQRE-FKVVILNEV 485
K E+ S+ + + P + G +V D V+ + + I S Q+ ++VV+++
Sbjct: 67 KSCELNAAGSHPDLFILQPEEAGKQLKV---DQVRALGEF--IYSTAQQGGYRVVVIDPA 121
Query: 486 DDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAPPXNLKL 653
D + + +AL + +E+ + L+L+ + + +V+P I+SRC I P + +
Sbjct: 122 DSMNIASANALLKMLEEPGSDTLLLLVTSKMGQVLPTIKSRCQHIECVTPDTEVAI 177
>UniRef50_Q21K67 Cluster: DNA polymerase III, delta prime subunit;
n=1; Saccharophagus degradans 2-40|Rep: DNA polymerase
III, delta prime subunit - Saccharophagus degradans
(strain 2-40 / ATCC 43961 / DSM 17024)
Length = 331
Score = 40.7 bits (91), Expect = 0.030
Identities = 19/58 (32%), Positives = 34/58 (58%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAP 635
KVV++ + + ++ +AL +++E+ LILI S+++P IRSRC I + P
Sbjct: 115 KVVVVTPTEAMNNNSSNALLKSLEEPAGDTVLILITFQESQILPTIRSRCARIVLTTP 172
>UniRef50_A7HXT6 Cluster: ATPase involved in DNA replication; n=5;
Alphaproteobacteria|Rep: ATPase involved in DNA
replication - Parvibaculum lavamentivorans DS-1
Length = 387
Score = 40.7 bits (91), Expect = 0.030
Identities = 17/77 (22%), Positives = 45/77 (58%)
Frame = +3
Query: 390 VVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIA 569
V+ +D V+ + + + + ++VVI++ D++ ++ +AL + +E+ ++++
Sbjct: 122 VIPVDEVRRIGHFFGLTATERGAWRVVIIDSADEMNANSANALLKALEEPPPNGLFLVLS 181
Query: 570 NSISRVIPAIRSRCLTI 620
+ +++P IRSRC T+
Sbjct: 182 HQPGQLLPTIRSRCRTL 198
>UniRef50_A7CWL2 Cluster: DNA polymerase III gamma/tau subunits-like
protein; n=1; Opitutaceae bacterium TAV2|Rep: DNA
polymerase III gamma/tau subunits-like protein -
Opitutaceae bacterium TAV2
Length = 336
Score = 40.7 bits (91), Expect = 0.030
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAP 635
KV I++E D + A + +T+E+ A L+L+ ++P IRSRCL P P
Sbjct: 113 KVAIIHECDRMHVSAANIFLKTLEEPPANTTLLLLTTRPYALLPTIRSRCLNFRFPDP 170
>UniRef50_A3ZPF5 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Blastopirellula marina DSM 3645|Rep: DNA polymerase
III gamma and tau subunits - Blastopirellula marina DSM
3645
Length = 618
Score = 40.7 bits (91), Expect = 0.030
Identities = 40/174 (22%), Positives = 77/174 (44%), Gaps = 1/174 (0%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVE 269
++RP+ +L + A LKN +++ H ++ G G GK + L + L
Sbjct: 24 RYRPQSFEELVGQSQVAQALKNAIERGRVGHAYLFTGARGVGKTSSARILAKAL------ 77
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
+ TP N+ +V+ ++V D G +R + + ++ + I +
Sbjct: 78 --NCQRGPSATPCNECDICRSVTVGEDVDVLEID-GASNRGI--EEIRQLRSNVNIRPSR 132
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
R FK+ I++EV TK+A +AL +T+E+ + I ++ + SRC
Sbjct: 133 AR-FKIYIIDEVHMFTKEAFNALLKTLEEPPEHVKFIFCTTDPEKIPITVLSRC 185
>UniRef50_A2SGX8 Cluster: DNA-directed DNA polymerase; n=1;
Methylibium petroleiphilum PM1|Rep: DNA-directed DNA
polymerase - Methylibium petroleiphilum (strain PM1)
Length = 357
Score = 40.7 bits (91), Expect = 0.030
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +3
Query: 417 VAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPA 596
VA Q S G KV ++ + + + + L +T+E+ R +L + + R++P
Sbjct: 128 VAFAQQTSSRGGA--KVTVIYPAERMNPASANTLLKTLEEPPGRARFVLASAAPQRLLPT 185
Query: 597 IRSRCLTISVPAP 635
+RSRC ++ VP P
Sbjct: 186 VRSRCQSLRVPLP 198
>UniRef50_A1W8D6 Cluster: DNA polymerase III, subunits gamma and
tau; n=13; cellular organisms|Rep: DNA polymerase III,
subunits gamma and tau - Acidovorax sp. (strain JS42)
Length = 679
Score = 40.7 bits (91), Expect = 0.030
Identities = 44/184 (23%), Positives = 74/184 (40%), Gaps = 2/184 (1%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVE 269
K+RPK ++ + L N + Q H ++ G G GK T L + L G +
Sbjct: 9 KYRPKTFSEMVGQEHVVQALSNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPD 68
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
T TP + S + D + V D V+ + + +
Sbjct: 69 GQGGIT---ATPCGVCPACTDIDSGRFPDYTELDAASNRGV---DEVQGLLE-QAVYKPV 121
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISV- 626
Q FKV +++EV LT A +A+ +T+E+ + +L +V + SRCL ++
Sbjct: 122 QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLR 181
Query: 627 PAPP 638
P P
Sbjct: 182 PMAP 185
>UniRef50_Q5UQ47 Cluster: Putative replication factor C small
subunit R395; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit R395 -
Mimivirus
Length = 319
Score = 40.7 bits (91), Expect = 0.030
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
W++K+RP ++ + + ++ +Q + HL+I G G GK + V C+ +EL G
Sbjct: 7 WIEKYRPVNIDDVIIDDNISKQINIFLQDRENVHLIITGSPGVGKTSTVRCIAKELLGED 66
Query: 264 VER 272
+ +
Sbjct: 67 MSQ 69
>UniRef50_UPI00015BD213 Cluster: UPI00015BD213 related cluster; n=1;
unknown|Rep: UPI00015BD213 UniRef100 entry - unknown
Length = 246
Score = 40.3 bits (90), Expect = 0.039
Identities = 17/55 (30%), Positives = 35/55 (63%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISV 626
KV ++ ++ K+A +AL +T+E+ + + I+ A+S+S +IP I SR + + +
Sbjct: 97 KVCLITNAQNMLKEASNALLKTLEEPPSYLKFIITADSLSNIIPTIVSRSIVLEL 151
>UniRef50_Q8DJU0 Cluster: DNA polymerase III gamma and tau subunits;
n=4; Cyanobacteria|Rep: DNA polymerase III gamma and tau
subunits - Synechococcus elongatus (Thermosynechococcus
elongatus)
Length = 603
Score = 40.3 bits (90), Expect = 0.039
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 1/174 (0%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKN-LVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSGVE 269
K+RP+ L A L L+++ P L GP G GK + L + L
Sbjct: 9 KYRPQRFSDLVGQGAIATTLTQALLKERIAPAYLFCGPRGTGKTSSARILAKSL---NCL 65
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
R + T + P + V++ ++V D H V D ++ + + Q +
Sbjct: 66 RSSKPTPD---PCGQCEVCRQVANGTSLDVIEIDAASHTGV---DNIRELIEKAQF-APV 118
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
Q +KV +++E L+ A +AL +T+E+ IL RV+P I SRC
Sbjct: 119 QCRYKVYVIDECHMLSVSAFNALLKTLEEPPPQVVFILATTDPQRVLPTIISRC 172
>UniRef50_Q0AIK8 Cluster: DNA polymerase III, delta prime subunit;
n=2; Nitrosomonas|Rep: DNA polymerase III, delta prime
subunit - Nitrosomonas eutropha (strain C71)
Length = 354
Score = 40.3 bits (90), Expect = 0.039
Identities = 21/66 (31%), Positives = 35/66 (53%)
Frame = +3
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVP 629
Q +KVV+++ + + A +AL + +E+ ILIA+ S + I SRC I++P
Sbjct: 136 QNRYKVVLIHPAEAMNAAAANALLKKLEEPPPEVLFILIAHGTSMIPATILSRCRQIAMP 195
Query: 630 APPXNL 647
P L
Sbjct: 196 TPDRKL 201
>UniRef50_A7HGU5 Cluster: DNA polymerase III, subunits gamma and
tau; n=3; Cystobacterineae|Rep: DNA polymerase III,
subunits gamma and tau - Anaeromyxobacter sp. Fw109-5
Length = 606
Score = 40.3 bits (90), Expect = 0.039
Identities = 37/174 (21%), Positives = 73/174 (41%), Gaps = 1/174 (0%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVE 269
K+RP+ ++ + L N ++ H ++ GP G GK T + + L
Sbjct: 9 KYRPQQFGEMSGQQHVVRTLSNALKTGQLAHAFLFTGPRGVGKTTTARLVAKAL------ 62
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
E P + ++ ++V D ++ V D V+++ + +
Sbjct: 63 --NCEKGPTAEPCGACTPCVEIAEGRAVDVVEIDAASNNGV---DNVRDIVEAVKYRPAR 117
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
R +KV +++EV L+ A +AL +T+E+ + +L + +V I SRC
Sbjct: 118 DR-YKVFVVDEVHMLSTGAFNALLKTLEEPPEHVKFVLATTDVHKVPETILSRC 170
>UniRef50_A3JQW8 Cluster: DNA polymerase III subunits gamma and tau;
n=1; Rhodobacterales bacterium HTCC2150|Rep: DNA
polymerase III subunits gamma and tau - Rhodobacterales
bacterium HTCC2150
Length = 596
Score = 40.3 bits (90), Expect = 0.039
Identities = 38/181 (20%), Positives = 72/181 (39%), Gaps = 1/181 (0%)
Frame = +3
Query: 72 KMSLWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRE 248
K + K+RP+ L LKN + G G GK + + +
Sbjct: 8 KYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFVLTGIRGTGKTSTARIIAKG 67
Query: 249 LYGSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQT 428
L G + T T P + + +S H+++ D R + D+ + +
Sbjct: 68 LNCIGPDGNGGPT---TEPCGQCEHCVAISEGRHVDIMEMDAA--SRTGVGDIREIIESV 122
Query: 429 HQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSR 608
H ++ + +K+ I++EV L+ A +AL +T+E+ + + I +V + SR
Sbjct: 123 HYRAASAR--YKIYIIDEVHMLSNSAFNALLKTLEEPPEHVKFVFATTEIRKVPVTVLSR 180
Query: 609 C 611
C
Sbjct: 181 C 181
>UniRef50_A0Q3M3 Cluster: DNA polymerase III, delta subunit,
putative; n=6; Clostridium|Rep: DNA polymerase III,
delta subunit, putative - Clostridium novyi (strain NT)
Length = 314
Score = 40.3 bits (90), Expect = 0.039
Identities = 26/89 (29%), Positives = 49/89 (55%)
Frame = +3
Query: 345 YHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRR 524
+ IE N +G+ I D++K V ++ G + KVVI+ + +T +AQ+A +
Sbjct: 65 WKIEKNKQSIGVDS---IRDIIKEV---NKKPYEGDK--KVVIVYNAEKMTTEAQNAFLK 116
Query: 525 TMEKYVATCRLILIANSISRVIPAIRSRC 611
T+E+ +IL++ ++ ++ IRSRC
Sbjct: 117 TIEEPPNGVLIILLSQNLEMMLETIRSRC 145
>UniRef50_Q9ABG0 Cluster: DNA polymerase III, gamma and tau
subunits; n=5; Alphaproteobacteria|Rep: DNA polymerase
III, gamma and tau subunits - Caulobacter crescentus
(Caulobacter vibrioides)
Length = 608
Score = 39.9 bits (89), Expect = 0.052
Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 1/174 (0%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPH-LLIYGPSGAGKKTRVMCLLRELYGSGVE 269
K+RP+ L + L N H ++ G G GK T L R L +
Sbjct: 62 KYRPRTFEDLIGQEAMVRTLANAFSTGRIAHAFMLTGVRGVGKTTTARLLARAL-NYETD 120
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
++ +++ TT ++ H++V D +V M + + + +++
Sbjct: 121 TVKGPSVDLTTEG---YHCRSIIEGRHMDVLELDAASRTKVDEMRELLDGVRYAPVEAR- 176
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
+KV I++EV L+ A +AL +T+E+ + I I +V I SRC
Sbjct: 177 ---YKVYIIDEVHMLSTAAFNALLKTLEEPPPHAKFIFATTEIRKVPVTILSRC 227
>UniRef50_Q8A7B5 Cluster: DNA polymerase III subunit gamma/tau; n=6;
Bacteroidales|Rep: DNA polymerase III subunit gamma/tau
- Bacteroides thetaiotaomicron
Length = 619
Score = 39.9 bits (89), Expect = 0.052
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 8/181 (4%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVE 269
K+RP + + LKN + H ++ GP G GK T C
Sbjct: 10 KYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTT---CA---------- 56
Query: 270 RLRQETMNFTTPS------NKKIEIMTVSSNYHIEVNPTDVGIHDRVV-IMDLVKNVAQT 428
R+ +T+N TP+ N+ + + ++ D ++ V I LV+ V
Sbjct: 57 RIFAKTINCMTPTTDGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIP 116
Query: 429 HQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSR 608
QI ++KV I++EV L+ A +A +T+E+ IL +++P I SR
Sbjct: 117 PQIG-----KYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSR 171
Query: 609 C 611
C
Sbjct: 172 C 172
>UniRef50_O83970 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Treponema pallidum|Rep: DNA polymerase III,
subunits gamma and tau - Treponema pallidum
Length = 572
Score = 39.9 bits (89), Expect = 0.052
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 1/154 (0%)
Frame = +3
Query: 153 KNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSGVERLRQETMNFTTPSNKKIEIMT 332
K+L + P L GP G GK + L + L + V+R E PS + EI T
Sbjct: 30 KSLEENKVSPAYLFSGPHGCGKTSCARILAKAL--NCVQREASEPCG-ECPSCR--EIAT 84
Query: 333 VSSNYHIEVN-PTDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQ 509
++ IE++ + G+ D V+ + + +G R +KV I++EV L+ A
Sbjct: 85 GTNLNVIEIDGASHTGVGD-------VRQIKEEILFPPHGTR-YKVFIIDEVHMLSNSAF 136
Query: 510 HALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
+AL +T+E+ I + R+ ++SRC
Sbjct: 137 NALLKTIEEPPPYVVFIFATTEVHRIPATVKSRC 170
>UniRef50_Q1GKB7 Cluster: DNA polymerase III subunits gamma and tau;
n=27; Bacteria|Rep: DNA polymerase III subunits gamma
and tau - Silicibacter sp. (strain TM1040)
Length = 608
Score = 39.9 bits (89), Expect = 0.052
Identities = 42/175 (24%), Positives = 67/175 (38%), Gaps = 2/175 (1%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVE 269
K+RP+ L LKN I G G GK T + + + G +
Sbjct: 23 KYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNCIGED 82
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVV-IMDLVKNVAQTHQIDSN 446
T T P K + H++V D V I +++ +VA
Sbjct: 83 GQGGPT---TEPCGKCEHCTAIMEGRHVDVMEMDAASRTGVGDIREIIDSVAYRA----- 134
Query: 447 GQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
+K+ I++EV L+ A +AL +T+E+ A + I I +V + SRC
Sbjct: 135 ASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRC 189
>UniRef50_Q0APP2 Cluster: DNA-directed DNA polymerase; n=1;
Maricaulis maris MCS10|Rep: DNA-directed DNA polymerase
- Maricaulis maris (strain MCS10)
Length = 349
Score = 39.9 bits (89), Expect = 0.052
Identities = 21/65 (32%), Positives = 39/65 (60%)
Frame = +3
Query: 441 SNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTI 620
S+G ++V I++ DD+ +A +AL +T+E+ L L+ ++ R+ IRSRC +
Sbjct: 133 SSGGGGWRVCIVDCADDMNNNAANALLKTLEEPPKQGVLFLVTHTPGRLPATIRSRCRRL 192
Query: 621 SVPAP 635
++ AP
Sbjct: 193 ALRAP 197
>UniRef50_A7M2L2 Cluster: Putative uncharacterized protein; n=2;
Bacteroides|Rep: Putative uncharacterized protein -
Bacteroides ovatus ATCC 8483
Length = 621
Score = 39.9 bits (89), Expect = 0.052
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 8/181 (4%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVE 269
K+RP + + LKN + H ++ GP G GK T C
Sbjct: 10 KYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTT---CA---------- 56
Query: 270 RLRQETMNFTTPS------NKKIEIMTVSSNYHIEVNPTDVGIHDRVV-IMDLVKNVAQT 428
R+ +T+N TP+ N+ + + ++ D ++ V I LV+ V
Sbjct: 57 RIFAKTINCMTPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIP 116
Query: 429 HQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSR 608
QI ++KV I++EV L+ A +A +T+E+ IL +++P I SR
Sbjct: 117 PQIG-----KYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSR 171
Query: 609 C 611
C
Sbjct: 172 C 172
>UniRef50_A5KMD2 Cluster: Putative uncharacterized protein; n=3;
Clostridiales|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 331
Score = 39.9 bits (89), Expect = 0.052
Identities = 16/57 (28%), Positives = 37/57 (64%)
Frame = +3
Query: 456 EFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISV 626
++K+ I+ + D ++ +AQ+AL +T+E+ ++L+ + ++P IRSRC+ + +
Sbjct: 112 KYKIYIIADADMMSVEAQNALLKTIEEPPEYAVIMLLTENAETLLPTIRSRCVMMKL 168
>UniRef50_A3WC72 Cluster: DNA polymerase III delta prime subunit;
n=4; Sphingomonadales|Rep: DNA polymerase III delta
prime subunit - Erythrobacter sp. NAP1
Length = 324
Score = 39.9 bits (89), Expect = 0.052
Identities = 19/56 (33%), Positives = 34/56 (60%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVP 629
+VVI++ DD+ A +AL +++E+ +L+ + SR++P IRSRC + P
Sbjct: 114 RVVIIDPADDMEVAAANALLKSLEEPPQGTFFMLVTHRPSRLLPTIRSRCRILRFP 169
>UniRef50_Q5CYE3 Cluster: RAD24/Rf-C activator 1 AAA+ ATpase; n=2;
Cryptosporidium|Rep: RAD24/Rf-C activator 1 AAA+ ATpase
- Cryptosporidium parvum Iowa II
Length = 701
Score = 39.9 bits (89), Expect = 0.052
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Frame = +3
Query: 75 MSLWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPH----------LLIYGPSGAGKKT 224
MSLW +K PK +L +K + + +K+ ++ S L+I+GP+GAGK T
Sbjct: 1 MSLWANKFEPKTAQELLVNKHKIIEVKSFLENSFISANSINGSKKNILIIFGPNGAGKTT 60
Query: 225 RVMCL 239
+ CL
Sbjct: 61 ILRCL 65
>UniRef50_Q55AK2 Cluster: AN1-type Zn finger-containing protein;
n=2; Dictyostelium discoideum|Rep: AN1-type Zn
finger-containing protein - Dictyostelium discoideum AX4
Length = 1024
Score = 39.9 bits (89), Expect = 0.052
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 6/130 (4%)
Frame = +3
Query: 192 IYGPSGAGKKTRVMCLLRELYGSGVERLRQETMNFTTPS--NKKIEIMTVSSNYHIEVNP 365
I+GP G GK T V+ + +L SG + L N + + K +E SS +N
Sbjct: 255 IHGPPGTGKTTTVVEFIVQLIKSGKKVLACGPSNLSVDNMLEKLLEYSNSSSCNGFLINA 314
Query: 366 TDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKD----AQHALRRTME 533
T +G H ++ L+K+ +S G + K I +E+ L+K QH+ RR ++
Sbjct: 315 TRIG-HPTRILPQLLKHTLDHKTKNSEGGQIIK-GIKDEIKSLSKQLLKVKQHSERRVIQ 372
Query: 534 KYVATCRLIL 563
+ R+ L
Sbjct: 373 SSIKELRIDL 382
>UniRef50_Q89BN2 Cluster: DNA polymerase III tau subunit; n=22;
Alphaproteobacteria|Rep: DNA polymerase III tau subunit
- Bradyrhizobium japonicum
Length = 613
Score = 39.5 bits (88), Expect = 0.069
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 3/176 (1%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVR-LKNLVQQSDFPHL-LIYGPSGAGKKTRVMCLLREL-YGSG 263
K+RP L +E VR + N + P ++ G G GK T L R L Y
Sbjct: 27 KYRPSSFDDL-IGQEAVVRTVSNAFETGRIPQAWILTGVRGVGKTTTARILARALNYEMP 85
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
++ T++ N + + + H++V D H V D V+ + + +
Sbjct: 86 DGSVKGPTIHMP---NLGVHCQAIMESRHMDVLEMDAASHTGV---DDVRQINDSVRYAP 139
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
R +KV I++EV L+ A +A +T+E+ + + I +V + SRC
Sbjct: 140 ASAR-YKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFATTEIRKVPVTVLSRC 194
>UniRef50_Q830L8 Cluster: DNA polymerase III, delta prime subunit;
n=2; Enterococcus|Rep: DNA polymerase III, delta prime
subunit - Enterococcus faecalis (Streptococcus faecalis)
Length = 316
Score = 39.5 bits (88), Expect = 0.069
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTI 620
KV ++ E D ++ A ++L + +E+ IL S+SR++P I+SRC T+
Sbjct: 112 KVFLIQEADKMSTGAANSLLKFLEEPEGQILAILETTSLSRILPTIQSRCQTL 164
>UniRef50_Q7MUS1 Cluster: DNA polymerase III, gamma and tau
subunits; n=1; Porphyromonas gingivalis|Rep: DNA
polymerase III, gamma and tau subunits - Porphyromonas
gingivalis (Bacteroides gingivalis)
Length = 602
Score = 39.5 bits (88), Expect = 0.069
Identities = 40/174 (22%), Positives = 75/174 (43%), Gaps = 1/174 (0%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVE 269
K+RP + + + LK+ + Q H ++ GP G GK + R + + +E
Sbjct: 11 KYRPDSFASMVGQEALSATLKSSIVQQKTAHAYLFCGPRGVGKTSCARIFARAI--NCLE 68
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
RL S K + + Y ++ + + D I L++ QI
Sbjct: 69 RLPDGEACGRCESCKAFDEQRSMNIYELDAASNN-SVDD---IRLLIEQANVPPQIG--- 121
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
++K+ I++EV L++ A +A +T+E+ + IL +++P I SRC
Sbjct: 122 --KYKIYIIDEVHMLSQQAFNAFLKTLEEPPSYVIFILATTEKHKILPTILSRC 173
>UniRef50_Q1QX48 Cluster: DNA polymerase III, delta prime subunit;
n=1; Chromohalobacter salexigens DSM 3043|Rep: DNA
polymerase III, delta prime subunit - Chromohalobacter
salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB13768)
Length = 323
Score = 39.5 bits (88), Expect = 0.069
Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 6/165 (3%)
Frame = +3
Query: 159 LVQQSD---FPH-LLIYGPSGAGKKTRVMCLL-RELYGSGVERLRQETMNFTTPSNKKIE 323
LV+Q D PH LLI GP G GK L+ R L + E T +
Sbjct: 14 LVRQQDAQRLPHALLISGPHGVGKHDLADALIARTLCHAPGE----------TACGECHA 63
Query: 324 IMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNV-AQTHQIDSNGQREFKVVILNEVDDLTK 500
++S YH ++ R + +D ++ V A Q G +V+ L+ + +
Sbjct: 64 CHMLASGYHPDLLDISPAEKRRQIRIDPIRQVNAFVSQTAQQGGH--RVIRLHPAEAMNV 121
Query: 501 DAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAP 635
A +AL +++E+ +L+A+ SR++P IRSRC S+ P
Sbjct: 122 AASNALLKSLEEPGERTLFVLLADIPSRMLPTIRSRCQHWSLGVP 166
>UniRef50_A6PRZ6 Cluster: ATPase involved in DNA replication-like
protein; n=1; Victivallis vadensis ATCC BAA-548|Rep:
ATPase involved in DNA replication-like protein -
Victivallis vadensis ATCC BAA-548
Length = 353
Score = 39.5 bits (88), Expect = 0.069
Identities = 20/64 (31%), Positives = 36/64 (56%)
Frame = +3
Query: 435 IDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCL 614
+ S G KV ++ + D + ++Q+AL +T+E+ LIL + + ++P RSRC
Sbjct: 114 LTSTGGANRKVGVIYDADRMNDESQNALLKTLEEPPPETLLILTTGNPASLLPTTRSRCQ 173
Query: 615 TISV 626
IS+
Sbjct: 174 QISL 177
>UniRef50_A6GQQ4 Cluster: AAA ATPase, central region; n=1;
Limnobacter sp. MED105|Rep: AAA ATPase, central region -
Limnobacter sp. MED105
Length = 586
Score = 39.5 bits (88), Expect = 0.069
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 3/188 (1%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELY-GSGV 266
K RP+D L L + + H ++ G G GK T L R + G+
Sbjct: 12 KWRPRDFDSLVGQAHVVKALSHALDNQRLHHAYLFTGTRGVGKTTIARILARAVNCEQGI 71
Query: 267 ERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSN 446
R TP K + +S +++ D + RV D ++ + +
Sbjct: 72 SR---------TPCGKCQACVEISQGRFVDLLEVDAATNTRV---DEMRALLENAMYAPT 119
Query: 447 GQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISV 626
R +KV +++EV L+ A +A+ +T+E+ IL ++ + SRCL ++
Sbjct: 120 AGR-YKVYVIDEVHMLSTSAFNAMLKTLEEPPGHVLFILATTDPQKIPATVLSRCLQFAL 178
Query: 627 -PAPPXNL 647
PP L
Sbjct: 179 RQLPPDQL 186
>UniRef50_A4BDY7 Cluster: DNA polymerase III subunit delta; n=1;
Reinekea sp. MED297|Rep: DNA polymerase III subunit
delta - Reinekea sp. MED297
Length = 320
Score = 39.5 bits (88), Expect = 0.069
Identities = 22/111 (19%), Positives = 55/111 (49%)
Frame = +3
Query: 303 PSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNE 482
P + + ++S +H ++ + + + ++ ++ V + ++ Q KVV L
Sbjct: 58 PCGRCKSCLLIASGHHPDLKVVEPEGKSQTIKVEAIREVIR-RATETAQQGGNKVVWLKS 116
Query: 483 VDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAP 635
+ + +A +AL + +E+ L++ A ++R++P +RSRC + + P
Sbjct: 117 AETMNVNAANALLKVLEEPPENTFLLVQAAQMARLLPTVRSRCRIVQLAQP 167
>UniRef50_Q3LVV8 Cluster: DNA replication factor C; n=1;
Bigelowiella natans|Rep: DNA replication factor C -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 313
Score = 39.5 bits (88), Expect = 0.069
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +3
Query: 402 DLVK-NVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSI 578
DL+K + Q D + ++ ++IL++++++ + LRR +E CR N I
Sbjct: 81 DLLKYRIKLFSQNDVSSKKAKNLLILSDIENVAPSSIFFLRRIIELSSFNCRFFFHCNQI 140
Query: 579 SRVIPAIRSRCLTISVPAPP 638
S+ I I SRCL + +P P
Sbjct: 141 SKKIIPIASRCLKV-IPQHP 159
>UniRef50_Q54RM2 Cluster: Origin recognition complex subunit 1; n=1;
Dictyostelium discoideum AX4|Rep: Origin recognition
complex subunit 1 - Dictyostelium discoideum AX4
Length = 631
Score = 39.5 bits (88), Expect = 0.069
Identities = 36/165 (21%), Positives = 76/165 (46%), Gaps = 10/165 (6%)
Frame = +3
Query: 186 LLIYGPSGAGKKTRVMCLLRELYGSGVERLRQETMNFTTPSNKKIEIMTVSSNYHI---E 356
L I G G GK V +++EL ++ +NF +++ YHI +
Sbjct: 261 LYIAGMPGTGKTATVKEIIKELQAKKKQQGGGGGLNFQFIEINGMQLSDPHQLYHILYNK 320
Query: 357 VNPTDVGIH-DRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTME 533
+ T + ++ D ++ + + ++ N +++F+V++++E D L Q + E
Sbjct: 321 MQKTRKSLEPKKISSQDALRLIQRNFEL-KNKKKQFRVILVDEFDSLITKKQTVIYNLFE 379
Query: 534 ---KYVATCRLILIANSIS---RVIPAIRSRCLTISVPAPPXNLK 650
K + +I IAN+++ ++P ++SR VP P N++
Sbjct: 380 WPNKPNSKLIIIAIANTMNLPDTLLPRVKSRMGLQKVPFTPYNIE 424
>UniRef50_Q9PCH3 Cluster: DNA polymerase III subunit; n=12;
Xanthomonadaceae|Rep: DNA polymerase III subunit -
Xylella fastidiosa
Length = 608
Score = 39.1 bits (87), Expect = 0.091
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 2/180 (1%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVR-LKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGV 266
K RPK +L +E VR L N ++ H ++ G G GK T + L
Sbjct: 9 KWRPKRFAEL-VGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSL----- 62
Query: 267 ERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSN 446
Q T P + + + +I++ D + V D+ + + + S
Sbjct: 63 -NCEQGTS--ADPCGRCTACLDIDVGRYIDLLEIDAASNTGVD--DVREMIENAQYMPSR 117
Query: 447 GQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISV 626
G+ FKV +++EV L+K A +AL +T+E+ + +L ++ + SRCL ++
Sbjct: 118 GK--FKVYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNL 175
>UniRef50_Q2SIR6 Cluster: DNA polymerase III delta prime subunit;
n=1; Hahella chejuensis KCTC 2396|Rep: DNA polymerase
III delta prime subunit - Hahella chejuensis (strain
KCTC 2396)
Length = 335
Score = 39.1 bits (87), Expect = 0.091
Identities = 16/58 (27%), Positives = 36/58 (62%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAP 635
++ +L + + + +A+ +T+E+ A+ ++L++ IS ++P IRSRC ++ AP
Sbjct: 119 RICVLTPAEAMNAYSANAILKTLEEPPASVVILLVSQQISLLLPTIRSRCQIYTLAAP 176
>UniRef50_Q2LYB8 Cluster: DNA polymerase III subunit gamma/tau; n=1;
Syntrophus aciditrophicus SB|Rep: DNA polymerase III
subunit gamma/tau - Syntrophus aciditrophicus (strain
SB)
Length = 588
Score = 39.1 bits (87), Expect = 0.091
Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 1/174 (0%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGVE 269
K RP+ + + LKN ++Q H ++ GP G GK T + +L +
Sbjct: 9 KWRPQVFEDVVGQQHVVQTLKNAIRQERIAHAFLFSGPRGVGK-TSIARIL-------AK 60
Query: 270 RLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNG 449
+ E TP N ++ ++V D G +R + D ++ + + +
Sbjct: 61 AINCEQGPAGTPCNVCTNCREITEGISMDVREID-GASNRGI--DEIRELRERIRFLPVS 117
Query: 450 QREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
R +KV I++EV LT++A +AL +T+E+ I +V I SRC
Sbjct: 118 CR-YKVYIIDEVHMLTREAFNALLKTLEEPPPHVVFIFATTETHKVPATILSRC 170
>UniRef50_Q1F0S1 Cluster: DNA polymerase III delta prime subunit;
n=2; Clostridiaceae|Rep: DNA polymerase III delta prime
subunit - Clostridium oremlandii OhILAs
Length = 329
Score = 39.1 bits (87), Expect = 0.091
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISV 626
KV I+ + D + Q+AL +T+E+ A LIL+ S ++P I SRC +I +
Sbjct: 108 KVYIICDADKMNIQGQNALLKTLEEPPAYATLILLTTKKSSLLPTIISRCQSIKL 162
>UniRef50_Q15U04 Cluster: DNA-directed DNA polymerase; n=1;
Pseudoalteromonas atlantica T6c|Rep: DNA-directed DNA
polymerase - Pseudoalteromonas atlantica (strain T6c /
BAA-1087)
Length = 300
Score = 39.1 bits (87), Expect = 0.091
Identities = 20/80 (25%), Positives = 47/80 (58%)
Frame = +3
Query: 396 IMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANS 575
I D +K ++ + Q+ KV+++++ +T+ + +AL +T+E+ L+L+++
Sbjct: 93 IRDAIKKLSGSAQLSGA-----KVLLIHDAHTMTESSANALLKTLEEPTNNTFLLLLSSH 147
Query: 576 ISRVIPAIRSRCLTISVPAP 635
R++P I SRC +++ +P
Sbjct: 148 PERLLPTILSRCEKVALFSP 167
>UniRef50_Q58294 Cluster: Replication factor C large subunit; n=6;
Methanococcales|Rep: Replication factor C large subunit
- Methanococcus jannaschii
Length = 516
Score = 39.1 bits (87), Expect = 0.091
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Frame = +3
Query: 75 MSLWVDKHRPKDLMKLDYHKEQAVRLKNLVQ---QSDFPH-LLIYGPSGAGKKTRVMCLL 242
M WV+K+RPK L + H++ +LK ++ + + P +L+ GP G GK T L
Sbjct: 1 MLSWVEKYRPKSLKDVAGHEKVKEKLKTWIESYLKGETPKPILLVGPPGCGKTTLAYALA 60
Query: 243 RELYGSGVERLRQETMNFTTPSNKKIEIMTVSSN 344
+ YG V L ++ K + SS+
Sbjct: 61 ND-YGFEVIELNASDKRNSSAIKKVVGHAATSSS 93
>UniRef50_Q8EY86 Cluster: DNA polymerase III subunit gamma; n=4;
Leptospira|Rep: DNA polymerase III subunit gamma -
Leptospira interrogans
Length = 503
Score = 38.7 bits (86), Expect = 0.12
Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 3/176 (1%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAV-RLKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGV 266
K+RP+ + H++ A+ L+N ++ H I+ GP G GK T L + L +
Sbjct: 35 KYRPQKFRDV-IHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL--NCQ 91
Query: 267 ERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNP-TDVGIHDRVVIMDLVKNVAQTHQIDS 443
+ E N N EI S+ +E++ ++ GI + + D VK
Sbjct: 92 NPIDNEPCN---ECNSCSEITRGISSDVLEIDAASNRGIENIRELRDNVKFAPM------ 142
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
G+ +KV I++EV LT + +AL +T+E+ A +L ++ I SRC
Sbjct: 143 GGK--YKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFVLATTEFHKIPETILSRC 196
>UniRef50_Q73G99 Cluster: DNA polymerase III, gamma and tau
subunits; n=14; Wolbachia|Rep: DNA polymerase III, gamma
and tau subunits - Wolbachia pipientis wMel
Length = 533
Score = 38.7 bits (86), Expect = 0.12
Identities = 45/177 (25%), Positives = 76/177 (42%), Gaps = 4/177 (2%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVR-LKNLVQQSDFPH-LLIYGPSGAGKKT--RVMCLLRELYGS 260
KHRP L ++ VR L+N + P +L+ G SG GK T R++ L
Sbjct: 6 KHRPSSFKDL-VGQDILVRVLENAFILNKIPQSILLSGSSGVGKTTTARIIALC------ 58
Query: 261 GVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQID 440
L P + + ++ H +V D H + + ++ I
Sbjct: 59 ----LNCSLGPIFEPCGSCENCLAIKNSSHPDVIEIDAASHTSIDDIKVILGDICYSPIS 114
Query: 441 SNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
S +FKV I++EV L+ A +AL +T+E+ ++ + IL I ++ I +RC
Sbjct: 115 S----KFKVYIIDEVHMLSSSAFNALLKTLEEPPSSVKFILATTEIKKIPITIIARC 167
>UniRef50_Q5FUU7 Cluster: DNA polymerase III delta prime subunit
DnaC; n=1; Gluconobacter oxydans|Rep: DNA polymerase III
delta prime subunit DnaC - Gluconobacter oxydans
(Gluconobacter suboxydans)
Length = 280
Score = 38.7 bits (86), Expect = 0.12
Identities = 19/58 (32%), Positives = 36/58 (62%)
Frame = +3
Query: 459 FKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPA 632
++VVI++ + L + A +AL + +E+ C L+L +S ++P IRSRC +++ A
Sbjct: 88 WRVVIVDGAEYLNRFAANALLKILEEPPPRCVLLLTTSSPGALLPTIRSRCRMLTLSA 145
>UniRef50_Q5F9P6 Cluster: Putative DNA polymerase III, delta'
subunit; n=4; Neisseria|Rep: Putative DNA polymerase
III, delta' subunit - Neisseria gonorrhoeae (strain ATCC
700825 / FA 1090)
Length = 325
Score = 38.7 bits (86), Expect = 0.12
Identities = 14/58 (24%), Positives = 36/58 (62%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISVPAP 635
+V++++ + + A ++L + +E+ +L++++ +V+P I+SRC + +PAP
Sbjct: 115 RVILIHPAESMNVQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAP 172
>UniRef50_Q3J800 Cluster: DNA-directed DNA polymerase; n=1;
Nitrosococcus oceani ATCC 19707|Rep: DNA-directed DNA
polymerase - Nitrosococcus oceani (strain ATCC 19707 /
NCIMB 11848)
Length = 529
Score = 38.7 bits (86), Expect = 0.12
Identities = 41/180 (22%), Positives = 77/180 (42%), Gaps = 2/180 (1%)
Frame = +3
Query: 93 KHRPKDLMKLDYHKEQAVR-LKNLVQQSDFPHLLIY-GPSGAGKKTRVMCLLRELYGSGV 266
K RP+D ++ +E VR L N + + H ++ G G GK T L + L +
Sbjct: 9 KWRPRDFTQV-VGQEHVVRALTNGLDKGRLHHAFLFTGTRGVGKTTLARILAKSL--NCK 65
Query: 267 ERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSN 446
E +R +TP K + +++ D R + D + + H S
Sbjct: 66 EGVR------STPCGKCQNCQAIDGGNFVDLIEVDAA--SRTGVDDTRELLENVHYAPSR 117
Query: 447 GQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCLTISV 626
G +KV +++EV + + +AL +T+E+ + +L ++ + SRCL ++
Sbjct: 118 GH--YKVYLIDEVHMFSTSSFNALLKTLEEPPPHIKFLLATTEPKKLPVTVLSRCLQFNL 175
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 588,720,211
Number of Sequences: 1657284
Number of extensions: 11370909
Number of successful extensions: 36422
Number of sequences better than 10.0: 452
Number of HSP's better than 10.0 without gapping: 34927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36344
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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