Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_G04
(653 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40348| Best HMM Match : No HMM Matches (HMM E-Value=.) 136 2e-32
SB_26897| Best HMM Match : AAA (HMM E-Value=4.2e-12) 76 3e-14
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064) 33 0.15
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35) 32 0.47
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05) 31 0.82
SB_30634| Best HMM Match : Apolipoprotein (HMM E-Value=0.16) 30 1.4
SB_5515| Best HMM Match : PspA_IM30 (HMM E-Value=0.14) 30 1.4
SB_34997| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_14177| Best HMM Match : MMR_HSR1 (HMM E-Value=3) 29 2.5
SB_45954| Best HMM Match : VWA (HMM E-Value=4e-26) 29 3.3
SB_58300| Best HMM Match : AAA_5 (HMM E-Value=0) 29 3.3
SB_30515| Best HMM Match : Lyase_8 (HMM E-Value=1.2e-05) 29 4.4
SB_33729| Best HMM Match : SAM_1 (HMM E-Value=0.00081) 28 5.8
SB_19368| Best HMM Match : DEAD (HMM E-Value=4) 28 5.8
>SB_40348| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 136 bits (328), Expect = 2e-32
Identities = 61/90 (67%), Positives = 75/90 (83%)
Frame = +3
Query: 366 TDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVA 545
+DVGI+DRVV+ +L+KN AQ H ++ + R+FKVV+L EVD LTKDAQHALRRTMEKY +
Sbjct: 15 SDVGIYDRVVVQELLKNTAQAHSLELSAHRDFKVVVLTEVDRLTKDAQHALRRTMEKYTS 74
Query: 546 TCRLILIANSISRVIPAIRSRCLTISVPAP 635
TCRLIL NS S+VIPAIRSRCL + +PAP
Sbjct: 75 TCRLILCCNSTSKVIPAIRSRCLGVRIPAP 104
>SB_26897| Best HMM Match : AAA (HMM E-Value=4.2e-12)
Length = 230
Score = 75.8 bits (178), Expect = 3e-14
Identities = 50/153 (32%), Positives = 79/153 (51%)
Frame = +3
Query: 153 KNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSGVERLRQETMNFTTPSNKKIEIMT 332
+ + + PHLL YGP G GK + ++ + ++LY +K+ M
Sbjct: 2 QRFINEERLPHLLFYGPPGTGKTSTILAVAKQLY-----------------PDKQFGSMV 44
Query: 333 VSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLTKDAQH 512
+ N D GI ++ + + A T I +G FK+VIL+E D +T+DAQ+
Sbjct: 45 LELNAS-----DDRGIG---IVRGDILSFASTRTIFKSG---FKLVILDEADAMTQDAQN 93
Query: 513 ALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
ALRR MEK+ R LI N ++++IPA++SRC
Sbjct: 94 ALRRVMEKFTENTRFCLICNYLTKIIPALQSRC 126
>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
Length = 1064
Score = 33.5 bits (73), Expect = 0.15
Identities = 23/84 (27%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Frame = +3
Query: 114 MKLDYHKEQAVRLKNLVQQSDFPH-LLIYGPSGAGKKTRVMCLLREL---YGSGVERLRQ 281
+KL+ ++EQ + ++V+ + PH LI+GP G GK V+ ++++ + SG + R+
Sbjct: 529 VKLEDNQEQRQAVVSIVKGTSRPHPYLIFGPPGTGKTITVVESIKQVMINHESGNKVTRK 588
Query: 282 ETMNFTTPSNKKIEIMTVSSNYHI 353
+ T S +K+ I+ S + +
Sbjct: 589 DEGRVVT-SKEKLRILHESDVFQV 611
>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
Length = 2748
Score = 31.9 bits (69), Expect = 0.47
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 129 HKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLREL 251
+K QA L +++ P LLI+GP G GK + ++EL
Sbjct: 358 NKPQATALSHILDPRPRPPLLIFGPFGTGKTRTIAEAVKEL 398
>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
Length = 1104
Score = 31.1 bits (67), Expect = 0.82
Identities = 18/85 (21%), Positives = 37/85 (43%)
Frame = +3
Query: 198 GPSGAGKKTRVMCLLRELYGSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVG 377
GP G GK T ++CL R L G L+ + +++ I+++ + T
Sbjct: 871 GPPGTGKTTSILCLARALLGVS---LKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPK 927
Query: 378 IHDRVVIMDLVKNVAQTHQIDSNGQ 452
+++I+D ++ D++ Q
Sbjct: 928 GRHKIIILDEADSLLYPFTYDNSRQ 952
>SB_30634| Best HMM Match : Apolipoprotein (HMM E-Value=0.16)
Length = 558
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = +3
Query: 306 SNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEV 485
SN +++ +SS+ I++ P V H+ V +M + ++ I R K+V +N +
Sbjct: 301 SNVSLKVFKLSSSPSIDLTPDPV--HNHVFLMQTTLSQSERELISQRNLRRLKMVRVNLM 358
Query: 486 DDLTKDAQH 512
D L + H
Sbjct: 359 DALNCVSGH 367
>SB_5515| Best HMM Match : PspA_IM30 (HMM E-Value=0.14)
Length = 388
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = +3
Query: 306 SNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEV 485
SN +++ +SS+ I++ P V H+ V +M + ++ I R K+V +N +
Sbjct: 310 SNVSLKVFKLSSSPSIDLTPDPV--HNHVFLMQTTLSQSERELISQRNLRRLKMVRVNLM 367
Query: 486 DDLTKDAQH 512
D L + H
Sbjct: 368 DALNCVSGH 376
>SB_34997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 845
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 138 QAVRLKNLVQQSDFPHL-LIYGPSGAGKKTRVMCLLREL 251
Q L+NL +++ L LI GP G+GK T ++ +L EL
Sbjct: 488 QETALQNLNMRANAKELTLINGPGGSGKSTLLLAVLGEL 526
>SB_14177| Best HMM Match : MMR_HSR1 (HMM E-Value=3)
Length = 302
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +3
Query: 186 LLIYGPSGAGKKTRVMCLLRELYGSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNP 365
+++ GPSG+GK T + LLR G + ++Q TMN + +T+ Y P
Sbjct: 198 VVVIGPSGSGKST-IWRLLRLALGKIGQTVKQYTMNPKAMPRTQGVTLTLVGGYGFIAEP 256
Query: 366 --TDVGI 380
+ +GI
Sbjct: 257 ARSSIGI 263
>SB_45954| Best HMM Match : VWA (HMM E-Value=4e-26)
Length = 715
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +3
Query: 138 QAVRLKNLVQQSDFPHLLIYGPSGAGKKTRV 230
QAV LKN + DF LLI G + A KTRV
Sbjct: 508 QAVGLKNFKKNLDFAKLLIDGYAIAPDKTRV 538
>SB_58300| Best HMM Match : AAA_5 (HMM E-Value=0)
Length = 1736
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 186 LLIYGPSGAGKKTRVMCLLRELYGSGVERLRQETMN 293
+++ GPSG+GK T + LLR G + ++Q TMN
Sbjct: 376 VVVIGPSGSGKST-IWRLLRLALGKIGQTVKQYTMN 410
>SB_30515| Best HMM Match : Lyase_8 (HMM E-Value=1.2e-05)
Length = 1364
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +3
Query: 303 PSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQ 452
P+++ E++ + N + NPT G+H RV K+ + Q+D+ G+
Sbjct: 1046 PAHRSAEVVDTNGNTYFVPNPTKQGLHLRVGDQ---KSKTDSGQVDTQGR 1092
>SB_33729| Best HMM Match : SAM_1 (HMM E-Value=0.00081)
Length = 196
Score = 28.3 bits (60), Expect = 5.8
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +3
Query: 300 TPSNKKIEIMTVSSNYHIEVNPTDV-GIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVIL 476
TPS KK I+ +++YH E NP DV DR DL+ ++ + +Q+ + + L
Sbjct: 24 TPSPKK-RIVQSTTSYHSEWNPEDVASFLDRSGHSDLI-HIFKDNQVTGSDLAAIDDIKL 81
Query: 477 NEVDDLTKDAQHALRRTMEK 536
E T L +++ K
Sbjct: 82 KEYGISTSHLAGGLLKSIRK 101
>SB_19368| Best HMM Match : DEAD (HMM E-Value=4)
Length = 217
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 183 HLLIYGPSGAGKKTRVMCLLRELYGSG 263
+ LI G G GK T + CL++ L SG
Sbjct: 126 YALILGMPGTGKTTTIACLVKVLIASG 152
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,263,888
Number of Sequences: 59808
Number of extensions: 360206
Number of successful extensions: 794
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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