Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_G04
(653 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF160912-1|AAD46852.2| 395|Drosophila melanogaster LD06837p pro... 315 4e-86
AE014134-2037|AAF53076.2| 356|Drosophila melanogaster CG6258-PA... 314 5e-86
AY119188-1|AAM51048.1| 332|Drosophila melanogaster SD11293p pro... 93 3e-19
AF247499-1|AAF63387.1| 332|Drosophila melanogaster replication ... 93 3e-19
AE014134-1878|AAF52944.2| 332|Drosophila melanogaster CG5313-PA... 93 3e-19
AY069598-1|AAL39743.1| 353|Drosophila melanogaster LD35209p pro... 85 8e-17
AE014298-2614|AAF48768.2| 353|Drosophila melanogaster CG8142-PA... 85 8e-17
U15967-1|AAB60241.1| 331|Drosophila melanogaster rfc40 protein. 79 5e-15
AY094829-1|AAM11182.1| 331|Drosophila melanogaster LD40483p pro... 79 5e-15
AE014296-772|AAF47843.1| 331|Drosophila melanogaster CG14999-PA... 79 5e-15
AE014297-996|AAF54422.3| 4671|Drosophila melanogaster CG9492-PA ... 32 0.78
AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein ... 29 7.3
>AF160912-1|AAD46852.2| 395|Drosophila melanogaster LD06837p
protein.
Length = 395
Score = 315 bits (773), Expect = 4e-86
Identities = 138/188 (73%), Positives = 170/188 (90%)
Frame = +3
Query: 72 KMSLWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLREL 251
+M+LWVDK+RP++L KLD+HK+QA L+NL +QSDFPHL+ YGPSGAGKKTR+MCLLRE+
Sbjct: 39 EMALWVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREM 98
Query: 252 YGSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTH 431
YGSGVERLR ETM FTTPSN+K+E+MTVSSNYH+EVNP+D G++DR V++DL+K VAQTH
Sbjct: 99 YGSGVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTH 158
Query: 432 QIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
QI+ +GQREFKV++++E D+LTKDAQHALRRTMEKYVATCR+I+ NS SR+IPAIRSRC
Sbjct: 159 QIEISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRC 218
Query: 612 LTISVPAP 635
L I V AP
Sbjct: 219 LGIRVAAP 226
>AE014134-2037|AAF53076.2| 356|Drosophila melanogaster CG6258-PA
protein.
Length = 356
Score = 314 bits (772), Expect = 5e-86
Identities = 138/187 (73%), Positives = 169/187 (90%)
Frame = +3
Query: 75 MSLWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELY 254
M+LWVDK+RP++L KLD+HK+QA L+NL +QSDFPHL+ YGPSGAGKKTR+MCLLRE+Y
Sbjct: 1 MALWVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMY 60
Query: 255 GSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQ 434
GSGVERLR ETM FTTPSN+K+E+MTVSSNYH+EVNP+D G++DR V++DL+K VAQTHQ
Sbjct: 61 GSGVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQ 120
Query: 435 IDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRCL 614
I+ +GQREFKV++++E D+LTKDAQHALRRTMEKYVATCR+I+ NS SR+IPAIRSRCL
Sbjct: 121 IEISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCL 180
Query: 615 TISVPAP 635
I V AP
Sbjct: 181 GIRVAAP 187
>AY119188-1|AAM51048.1| 332|Drosophila melanogaster SD11293p
protein.
Length = 332
Score = 93.1 bits (221), Expect = 3e-19
Identities = 58/176 (32%), Positives = 91/176 (51%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RP L L H+E + + + PHLL YGP G GK + ++ R+LY
Sbjct: 13 WVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLY--- 69
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
+P K ++ ++++ D GI ++ + N A T I
Sbjct: 70 ------------SPQQFKSMVLELNAS-------DDRGIG---IVRGQILNFASTRTIFC 107
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
+ FK++IL+E D +T DAQ+ALRR +EKY R +I N +S++IPA++SRC
Sbjct: 108 D---TFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRC 160
>AF247499-1|AAF63387.1| 332|Drosophila melanogaster replication
factor C subunit 3 protein.
Length = 332
Score = 93.1 bits (221), Expect = 3e-19
Identities = 58/176 (32%), Positives = 91/176 (51%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RP L L H+E + + + PHLL YGP G GK + ++ R+LY
Sbjct: 13 WVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLY--- 69
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
+P K ++ ++++ D GI ++ + N A T I
Sbjct: 70 ------------SPQQFKSMVLELNAS-------DDRGIG---IVRGQILNFASTRTIFC 107
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
+ FK++IL+E D +T DAQ+ALRR +EKY R +I N +S++IPA++SRC
Sbjct: 108 D---TFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRC 160
>AE014134-1878|AAF52944.2| 332|Drosophila melanogaster CG5313-PA
protein.
Length = 332
Score = 93.1 bits (221), Expect = 3e-19
Identities = 58/176 (32%), Positives = 91/176 (51%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RP L L H+E + + + PHLL YGP G GK + ++ R+LY
Sbjct: 13 WVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLY--- 69
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
+P K ++ ++++ D GI ++ + N A T I
Sbjct: 70 ------------SPQQFKSMVLELNAS-------DDRGIG---IVRGQILNFASTRTIFC 107
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
+ FK++IL+E D +T DAQ+ALRR +EKY R +I N +S++IPA++SRC
Sbjct: 108 D---TFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRC 160
>AY069598-1|AAL39743.1| 353|Drosophila melanogaster LD35209p
protein.
Length = 353
Score = 85.0 bits (201), Expect = 8e-17
Identities = 52/176 (29%), Positives = 86/176 (48%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RP+++ + E L+ V+ D P++L+YGP G GK + ++ R+++G
Sbjct: 32 WVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFG-- 89
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
+ + + + I ++ R I + + A + + D
Sbjct: 90 -DMFKDRILELNASDERGINVV-------------------RTKIKNFSQLSASSVRPDG 129
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
FK++IL+E D +T AQ ALRRTMEK + R LI N +SR+I I SRC
Sbjct: 130 KPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRC 185
>AE014298-2614|AAF48768.2| 353|Drosophila melanogaster CG8142-PA
protein.
Length = 353
Score = 85.0 bits (201), Expect = 8e-17
Identities = 52/176 (29%), Positives = 86/176 (48%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RP+++ + E L+ V+ D P++L+YGP G GK + ++ R+++G
Sbjct: 32 WVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFG-- 89
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
+ + + + I ++ R I + + A + + D
Sbjct: 90 -DMFKDRILELNASDERGINVV-------------------RTKIKNFSQLSASSVRPDG 129
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
FK++IL+E D +T AQ ALRRTMEK + R LI N +SR+I I SRC
Sbjct: 130 KPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRC 185
>U15967-1|AAB60241.1| 331|Drosophila melanogaster rfc40 protein.
Length = 331
Score = 79.0 bits (186), Expect = 5e-15
Identities = 56/176 (31%), Positives = 86/176 (48%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
W++K+RP ++ +++ RL Q + P+++I GP G GK T + CL R L G
Sbjct: 18 WIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDS 77
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
+ E + SN++ GI V+ + +K AQ
Sbjct: 78 YK----EAVLELNASNER-------------------GID---VVRNKIKMFAQQKVTLP 111
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
G+ K+VIL+E D +T+ AQ ALRRTME Y +T R L N+ ++I I+SRC
Sbjct: 112 RGRH--KIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRC 165
>AY094829-1|AAM11182.1| 331|Drosophila melanogaster LD40483p
protein.
Length = 331
Score = 79.0 bits (186), Expect = 5e-15
Identities = 56/176 (31%), Positives = 86/176 (48%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
W++K+RP ++ +++ RL Q + P+++I GP G GK T + CL R L G
Sbjct: 18 WIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDS 77
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
+ E + SN++ GI V+ + +K AQ
Sbjct: 78 YK----EAVLELNASNER-------------------GID---VVRNKIKMFAQQKVTLP 111
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
G+ K+VIL+E D +T+ AQ ALRRTME Y +T R L N+ ++I I+SRC
Sbjct: 112 RGRH--KIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRC 165
>AE014296-772|AAF47843.1| 331|Drosophila melanogaster CG14999-PA
protein.
Length = 331
Score = 79.0 bits (186), Expect = 5e-15
Identities = 56/176 (31%), Positives = 86/176 (48%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
W++K+RP ++ +++ RL Q + P+++I GP G GK T + CL R L G
Sbjct: 18 WIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDS 77
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
+ E + SN++ GI V+ + +K AQ
Sbjct: 78 YK----EAVLELNASNER-------------------GID---VVRNKIKMFAQQKVTLP 111
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
G+ K+VIL+E D +T+ AQ ALRRTME Y +T R L N+ ++I I+SRC
Sbjct: 112 RGRH--KIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRC 165
>AE014297-996|AAF54422.3| 4671|Drosophila melanogaster CG9492-PA
protein.
Length = 4671
Score = 31.9 bits (69), Expect = 0.78
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 108 DLMKLDYHKEQAVRLKNLVQQSDFPH-LLIYGPSGAGKKTRVMCLLRELYGSGVERLRQE 284
D L YH ++L L + H ++ GPSGAGK T + L++ + G + R+
Sbjct: 2227 DEASLVYHPPWVLKLIQLYETQHVRHGIMTLGPSGAGKTTCIHTLMKAMTQMG-DNHREM 2285
Query: 285 TMN 293
MN
Sbjct: 2286 RMN 2288
>AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein
protein.
Length = 1037
Score = 28.7 bits (61), Expect = 7.3
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Frame = +3
Query: 306 SNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEV 485
SNKKI++ V + ++ N D+GIH+ ++ M+L+ A++ I+ Q+ F+ + E
Sbjct: 56 SNKKIQLNNVYLDLLVQENHLDLGIHN-LIPMNLICPQARS-SINELIQK-FEHIFYKEG 112
Query: 486 DDL--TKDAQHAL 518
DL T + +H +
Sbjct: 113 QDLSFTSEIKHRI 125
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,493,105
Number of Sequences: 53049
Number of extensions: 518955
Number of successful extensions: 1521
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1521
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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