Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_G04
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70307-13|CAA94339.1| 354|Caenorhabditis elegans Hypothetical p... 248 4e-66
L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical p... 99 1e-21
U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna replic... 93 1e-19
AF036699-3|AAB88360.1| 334|Caenorhabditis elegans Rfc (dna repl... 83 2e-16
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein. 31 0.54
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein... 31 0.54
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein... 31 0.54
L26987-1|AAA62312.1| 627|Caenorhabditis elegans par-2 protein. 30 1.2
AF106580-1|AAK73890.3| 582|Caenorhabditis elegans Abnormal embr... 30 1.2
Z29094-3|CAA82343.1| 358|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81074-1|CAB03044.2| 492|Caenorhabditis elegans Hypothetical pr... 28 6.7
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 28 6.7
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 28 6.7
AF083223-1|AAD03681.1| 492|Caenorhabditis elegans nuclear recep... 28 6.7
AF002198-12|AAF99928.1| 194|Caenorhabditis elegans Hypothetical... 28 6.7
AC024843-9|AAF60836.1| 263|Caenorhabditis elegans Hypothetical ... 28 6.7
AF039710-4|AAD32273.1| 347|Caenorhabditis elegans Serpentine re... 27 8.8
>Z70307-13|CAA94339.1| 354|Caenorhabditis elegans Hypothetical
protein C39E9.13 protein.
Length = 354
Score = 248 bits (606), Expect = 4e-66
Identities = 119/190 (62%), Positives = 146/190 (76%), Gaps = 3/190 (1%)
Frame = +3
Query: 75 MSLWVDKHRPKDLMK---LDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLR 245
M+LWVDK+RPKDL+ +DYH EQA LK L PHLL GPSGAGKKTR+ CLLR
Sbjct: 1 MALWVDKYRPKDLLGKDGVDYHIEQANHLKFLSADC-MPHLLFCGPSGAGKKTRIKCLLR 59
Query: 246 ELYGSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQ 425
ELYG GVE+ + +FT+PSNKK+EI TVSSNYHIE+ P+DVGI+DRVV+ DLVK +AQ
Sbjct: 60 ELYGVGVEKTQLIMKSFTSPSNKKLEIQTVSSNYHIEMTPSDVGIYDRVVVQDLVKEMAQ 119
Query: 426 THQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRS 605
T QI+S QR FKVV+L E D LT+DAQH LRRTMEKY C+++L S+SR+I ++S
Sbjct: 120 TSQIESTSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQS 179
Query: 606 RCLTISVPAP 635
RC+ I+VPAP
Sbjct: 180 RCIIINVPAP 189
>L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical
protein F44B9.8 protein.
Length = 368
Score = 99 bits (238), Expect = 1e-21
Identities = 61/176 (34%), Positives = 89/176 (50%)
Frame = +3
Query: 84 WVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLRELYGSG 263
WV+K+RP L +L H++ L ++ PHLL YGP G GK T V+ R++Y
Sbjct: 31 WVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMY--- 87
Query: 264 VERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTHQIDS 443
S K+ M + N E DV + + +V K + +
Sbjct: 88 --------------SPTKMASMVLELNASDE-RGIDV-VRNTIVNFAQTKGLQAFSTSSN 131
Query: 444 NGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
G FK+VIL+E D +TKDAQ+ALRR +EKY R +I N ++ ++PAI+SRC
Sbjct: 132 TGTVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRC 187
>U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 4 protein.
Length = 334
Score = 93.5 bits (222), Expect = 1e-19
Identities = 58/195 (29%), Positives = 94/195 (48%), Gaps = 1/195 (0%)
Frame = +3
Query: 72 KMSLWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLREL 251
K+ W +K+RPK L + Y E LK +Q D PHLL YGP G GK + + R+L
Sbjct: 13 KVLTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQL 72
Query: 252 YGSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKN-VAQT 428
+ + ++ + I ++ R I K+ + +
Sbjct: 73 FPKNI--FHDRVLDLNASDERGIAVV-------------------RQKIQSFSKSSLGHS 111
Query: 429 HQIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSR 608
H+ D + K++IL+EVD +T++AQ A+RR +E + T R ILI N +SR+IP + SR
Sbjct: 112 HREDV---LKLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSR 168
Query: 609 CLTISVPAPPXNLKL 653
C + P +++
Sbjct: 169 CAKFRFKSLPAEIQV 183
>AF036699-3|AAB88360.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 2 protein.
Length = 334
Score = 83.0 bits (196), Expect = 2e-16
Identities = 60/180 (33%), Positives = 90/180 (50%)
Frame = +3
Query: 72 KMSLWVDKHRPKDLMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKTRVMCLLREL 251
+++ WV+K+RPK L + ++ RLK + + + P++++ GP G GK T V L REL
Sbjct: 8 QLAPWVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWALAREL 67
Query: 252 YGSGVERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDLVKNVAQTH 431
G V+ E + +E+N +D D V+ +K AQT
Sbjct: 68 LGDKVK----EAV--------------------LELNASDERGID--VVRHRIKTFAQTK 101
Query: 432 QIDSNGQREFKVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIANSISRVIPAIRSRC 611
G+ K++IL+E D +T AQ ALRRTME Y T R L N ++I I+SRC
Sbjct: 102 VTLPEGRH--KIIILDEADSMTDGAQQALRRTMEMYTKTTRFALACNQSEKIIEPIQSRC 159
>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 31.5 bits (68), Expect = 0.54
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIAN-SISRVIPAIRS 605
K+ IL+ +D+ T + L+R +++ + CR + I N SIS+V+PAI S
Sbjct: 314 KLDILHYIDNETFNHLIYLQRLLQQCMKHCRELSIPNNSISQVVPAIMS 362
>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 31.5 bits (68), Expect = 0.54
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIAN-SISRVIPAIRS 605
K+ IL+ +D+ T + L+R +++ + CR + I N SIS+V+PAI S
Sbjct: 314 KLDILHYIDNETFNHLIYLQRLLQQCMKHCRELSIPNNSISQVVPAIMS 362
>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
Length = 1440
Score = 31.5 bits (68), Expect = 0.54
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIAN-SISRVIPAIRS 605
K+ IL+ +D+ T + L+R +++ + CR + I N SIS+V+PAI S
Sbjct: 314 KLDILHYIDNETFNHLIYLQRLLQQCMKHCRELSIPNNSISQVVPAIMS 362
>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 31.5 bits (68), Expect = 0.54
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIAN-SISRVIPAIRS 605
K+ IL+ +D+ T + L+R +++ + CR + I N SIS+V+PAI S
Sbjct: 314 KLDILHYIDNETFNHLIYLQRLLQQCMKHCRELSIPNNSISQVVPAIMS 362
>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 31.5 bits (68), Expect = 0.54
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +3
Query: 462 KVVILNEVDDLTKDAQHALRRTMEKYVATCRLILIAN-SISRVIPAIRS 605
K+ IL+ +D+ T + L+R +++ + CR + I N SIS+V+PAI S
Sbjct: 314 KLDILHYIDNETFNHLIYLQRLLQQCMKHCRELSIPNNSISQVVPAIMS 362
>L26987-1|AAA62312.1| 627|Caenorhabditis elegans par-2 protein.
Length = 627
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3
Query: 186 LLIYGPSGAGKKTRVMCLLRELYGSGVERLR 278
L+++G SGAGK T V +R+L+ G +R+R
Sbjct: 423 LVVFGHSGAGKTTFVRA-IRQLFLEGTDRIR 452
>AF106580-1|AAK73890.3| 582|Caenorhabditis elegans Abnormal
embryonic partitioningof cytoplasm protein 2, isoform b
protein.
Length = 582
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3
Query: 186 LLIYGPSGAGKKTRVMCLLRELYGSGVERLR 278
L+++G SGAGK T V +R+L+ G +R+R
Sbjct: 378 LVVFGHSGAGKTTFVRA-IRQLFLEGTDRIR 407
>Z29094-3|CAA82343.1| 358|Caenorhabditis elegans Hypothetical
protein C07A9.5 protein.
Length = 358
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +3
Query: 231 MCLLRELYGSGVERLRQETMNFTTPSN-KKIEIMTVSSNYHIEVNPTDVGIHDRVVIMDL 407
+CL + Y VE +ETM+ PS +K + M Y ++ T++ + D I D
Sbjct: 256 LCLKSQGYNFSVESTLKETMSLLDPSTYEKHDYM----RYMVKHETTNI-LDDHSAIEDA 310
Query: 408 VKNVAQTHQIDSNGQRE 458
+KN+ DS ++E
Sbjct: 311 LKNLDARKISDSMSRKE 327
>Z81074-1|CAB03044.2| 492|Caenorhabditis elegans Hypothetical
protein F32B6.1 protein.
Length = 492
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 267 ERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGI 380
+RLR ET+ TT ++ K+EI +++ NPT G+
Sbjct: 159 KRLRPETVEKTTQTDGKLEINDDFDFENMQQNPTPPGL 196
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 111 LMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKT 224
L+ D + +R+ + +QS HLL+ G +GAGK T
Sbjct: 2852 LVLFDQMLDHVLRIDRIYRQSQ-GHLLLIGTAGAGKTT 2888
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 111 LMKLDYHKEQAVRLKNLVQQSDFPHLLIYGPSGAGKKT 224
L+ D + +R+ + +QS HLL+ G +GAGK T
Sbjct: 2852 LVLFDQMLDHVLRIDRIYRQSQ-GHLLLIGTAGAGKTT 2888
>AF083223-1|AAD03681.1| 492|Caenorhabditis elegans nuclear receptor
NHR-4 protein.
Length = 492
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 267 ERLRQETMNFTTPSNKKIEIMTVSSNYHIEVNPTDVGI 380
+RLR ET+ TT ++ K+EI +++ NPT G+
Sbjct: 159 KRLRPETVEKTTQTDGKLEINDDFDFENMQQNPTPPGL 196
>AF002198-12|AAF99928.1| 194|Caenorhabditis elegans Hypothetical
protein F35F10.13 protein.
Length = 194
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 372 VGIHDRVVIMDLVKNVAQTHQIDSNGQREFKVVILNEVDDLT 497
VGI R + DL + +++ + D N REFK + N ++ T
Sbjct: 34 VGIICRQTVHDLPRKMSELNMNDINEMREFKKYVDNAINCFT 75
>AC024843-9|AAF60836.1| 263|Caenorhabditis elegans Hypothetical
protein Y61A9LA.9 protein.
Length = 263
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +2
Query: 137 TSCTSEKSCATK*LSSPSYLRALWSR*E-----NTSYVLIERALWIRCGALKARNNEFYN 301
TS EK T+ P+ L L +R E N+S A RC AL+++ +E +
Sbjct: 34 TSSPPEKQQQTRKRGRPTALELLTTRVEELEKENSSLRTFRTAAESRCRALESKQSELFQ 93
Query: 302 TLKQ 313
T++Q
Sbjct: 94 TVEQ 97
>AF039710-4|AAD32273.1| 347|Caenorhabditis elegans Serpentine
receptor, class h protein99 protein.
Length = 347
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 102 PKDLMKLDYHKEQAVRLKNLVQQSDFPHLLI 194
P DL+ L+ K+Q L+N++ Q P + I
Sbjct: 242 PSDLISLETQKKQKTFLRNVILQFSIPSIFI 272
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,906,599
Number of Sequences: 27780
Number of extensions: 281518
Number of successful extensions: 802
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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