Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_G03
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb...    26   4.1  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    26   5.4  
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    25   7.2  

>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 129 GQWAAQDIGKKPRSQWSRV 73
           G+WAA D  +KP   W ++
Sbjct: 194 GKWAAVDAAQKPEQVWEQI 212


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 200 H*QVCLPRMPKGLFSISSGLLFNTGNGLLRTLERSP 93
           H +V + R+PK L  + SG + N  N ++  L  SP
Sbjct: 258 HHEVSVGRLPKNLHPLQSG-IGNIANAIIGGLAHSP 292


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 336 SGISSLQDPHLLSKPLNALGVLNSKG-XKVPDAIGLEPKPGPVGGSSDEK 482
           SG   + DP LL + + ALGV    G  +  DA  +   P   GG   E+
Sbjct: 505 SGAQRIHDPELLVERMKALGVSPDVGLQQYIDAFAIGCPPHAGGGIGLER 554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,400
Number of Sequences: 5004
Number of extensions: 49925
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)