Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_G03
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0998 + 25126114-25126596,25129213-25129339,25129349-251294... 30 1.8
05_01_0299 - 2322204-2322734,2324089-2326164 30 1.8
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440... 29 3.2
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037... 29 4.2
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78... 28 5.6
10_07_0177 - 13841148-13841267,13841569-13841645,13842710-138428... 28 5.6
02_02_0358 + 9373440-9373500,9375106-9375632 27 9.8
02_02_0356 + 9336558-9337091 27 9.8
02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915 27 9.8
>12_02_0998 +
25126114-25126596,25129213-25129339,25129349-25129459,
25130122-25130270,25130356-25130643,25130753-25130941,
25131445-25131619,25132219-25132316
Length = 539
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 493 PRAGFSSELPPTGPGFGSNP 434
P G S +PP GPG+G NP
Sbjct: 312 PPWGHPSNVPPGGPGYGGNP 331
>05_01_0299 - 2322204-2322734,2324089-2326164
Length = 868
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Frame = -3
Query: 496 NPRAG--FSSELPPTGPGFGSNPIASGTX*PLEFNTPNAFKGFERRCGSCSDEIPLLSPK 323
NP+ G F +L P P + A + P N P++ G EIP L PK
Sbjct: 270 NPQTGVTFRGKLTPVPPNSYNTAKADSSATPANLNVPSSKPSVS---GKAQSEIPNLKPK 326
Query: 322 ASDRSFNPRSSSEP 281
+ S +P
Sbjct: 327 ENSNPVPDHSEEQP 340
>08_01_0004 +
39265-39440,39545-39652,41955-43528,43650-43996,
44090-44322,45308-45412,45531-45705,46443-46658
Length = 977
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 409 LEFNTPNAFKGFERRCGSCSDEIPLLSPKAS-DRSFNPRSSSEPLALVRPGISPA*SADW 233
+ +N FK F+ GS L SP+ S D S + SSS P+ L+R + + W
Sbjct: 102 IPYNICCDFKPFQHTDGSSHSSSELASPEDSLDLSSSSSSSSPPIILLRLNVPHESNKSW 161
>04_04_0233 +
23801944-23802598,23802914-23803047,23803548-23803730,
23804145-23804318
Length = 381
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3
Query: 375 KPLNALGVLNSKGXKVPDAIGLEPKPGPVGGSSDEKPALGLIDHSXEYHTA 527
+PL L+++G +V A G G G ++ + ALGL + +A
Sbjct: 124 RPLREAAALHARGRRVKHAAGAAAAAGAEGRKAERQRALGLFQRAARLGSA 174
>12_01_0101 -
779047-779298,779459-779711,779857-780005,780033-780281,
780377-780571,780681-780788,780935-781156,781669-781986,
781988-782615,783059-783135,783161-783267,783491-783619,
783763-783820,783902-783984,784458-784539,784617-784693,
784827-784910,784999-785068,785146-785234,785319-786008,
786485-786797
Length = 1410
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +2
Query: 365 SSLEAFKCIGCIKL*RSXSTRRNRIGTKTGTCWWK 469
S F CIGC ++ R + TCWWK
Sbjct: 605 SKFSLFFCIGCARVQSFAWFLRKKKNQAFHTCWWK 639
>10_07_0177 -
13841148-13841267,13841569-13841645,13842710-13842860,
13842942-13843056,13843145-13843236,13843317-13843370,
13843849-13843935,13844023-13844109,13844191-13844274,
13844359-13844445,13844793-13845549,13846491-13846648
Length = 622
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 158 SISSGLLFNTGNGLLRTLERSPGVN 84
S SG+L TG+G + L +SPG+N
Sbjct: 132 STGSGVLSTTGSGSMSNLGQSPGLN 156
>02_02_0358 + 9373440-9373500,9375106-9375632
Length = 195
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = -3
Query: 178 GCPKVYSV----YPAACYSIRAMGCSGHWKEAPESMEQSKQRLR 59
GCP++ S+ PA+ + AM CS K+ + +E+S Q L+
Sbjct: 148 GCPEIRSLPEEGIPASLKKLLAMRCSVDLKDQLKRLEESNQDLQ 191
>02_02_0356 + 9336558-9337091
Length = 177
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = -3
Query: 178 GCPKVYSV----YPAACYSIRAMGCSGHWKEAPESMEQSKQRLR 59
GCP++ S+ PA+ + AM CS K+ + +E+S Q L+
Sbjct: 130 GCPEIRSLPEEGIPASLKKLLAMRCSVDLKDQLKRLEESNQDLQ 173
>02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915
Length = 1270
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = -3
Query: 178 GCPKVYSV----YPAACYSIRAMGCSGHWKEAPESMEQSKQRLR 59
GCP++ S+ PA+ + AM CS K+ + +E+S Q L+
Sbjct: 1223 GCPEIRSLPEEGIPASLKKLLAMRCSVDLKDQLKRLEESNQDLQ 1266
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,138,236
Number of Sequences: 37544
Number of extensions: 345866
Number of successful extensions: 819
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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