Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_G03
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30409| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_18231| Best HMM Match : HSP9_HSP12 (HMM E-Value=2.4)                28   7.6  
SB_59788| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_37360| Best HMM Match : ETS_PEA3_N (HMM E-Value=0.65)               28   7.6  

>SB_30409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 378 PLNALGVLNSKGXKVPDAIGLEPKPGPVGGSSDEKPALGL 497
           P+N    L+ +G +  D   LEP P PVG  S  K  L L
Sbjct: 9   PMNGFTPLSGRG-ECDDTAPLEPSPRPVGEDSTLKKLLAL 47


>SB_18231| Best HMM Match : HSP9_HSP12 (HMM E-Value=2.4)
          Length = 115

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +3

Query: 372 SKPLNALGVLNSKGXKVPDAIGLEPK---PGPVGGSSDEKPALGLIDHSXEYHTA 527
           SKP+   GV N     +PDA+  +     P PV  + DE P +  +D + +   A
Sbjct: 36  SKPIPD-GVCNDTSKSIPDAVCDDTSKSIPDPVCDNLDESPKISTMDRASDVSPA 89


>SB_59788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 349 DEIPLLSPKASDRSFNPRSSSEPLALVRP 263
           DEIP++  K  D+  N  S  +PL L RP
Sbjct: 97  DEIPVVGLKHRDQRSNSCSPGDPLVLERP 125


>SB_37360| Best HMM Match : ETS_PEA3_N (HMM E-Value=0.65)
          Length = 861

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -3

Query: 466 PPTGPGFGSNPIASGTX*PLEFNTPNAFK-GFERRCGSCSDEIPLLSPKASDRSFNPRSS 290
           PP   G  S  I+  +  P+   +P   + GF +R GS        SP++S  S +PRS 
Sbjct: 511 PPRNHGSLSRYISKNSLSPISPISPQKQRPGFRQRTGSTDSSG---SPRSSPNSLSPRSP 567

Query: 289 SEP 281
             P
Sbjct: 568 ISP 570


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,825,489
Number of Sequences: 59808
Number of extensions: 397434
Number of successful extensions: 752
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)