Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_G03
         (651 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ400852-1|CAC14137.1| 1199|Homo sapiens MUC4 protein splice var...    32   2.0  
AJ400853-1|CAC14138.1| 1201|Homo sapiens MUC4 protein splice var...    31   3.6  

>AJ400852-1|CAC14137.1| 1199|Homo sapiens MUC4 protein splice variant
            sv15 protein.
          Length = 1199

 Score = 31.9 bits (69), Expect = 2.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 151  PAACYSIRAMGCSGHWKEAPES 86
            P  C+S RA+GCSG W  A  S
Sbjct: 1161 PMPCFSTRAVGCSGTWPSAQAS 1182


>AJ400853-1|CAC14138.1| 1201|Homo sapiens MUC4 protein splice variant
            sv16 protein.
          Length = 1201

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 151  PAACYSIRAMGCSGHWKEA 95
            P  C+S RA+GCSG W  A
Sbjct: 1161 PMPCFSTRAVGCSGTWPSA 1179


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,584,558
Number of Sequences: 237096
Number of extensions: 2003724
Number of successful extensions: 4206
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4198
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)