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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_G03
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembl...    28   5.0  
AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein...    28   5.0  

>L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembly
           abnormal protein 4 protein.
          Length = 808

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
 Frame = -3

Query: 400 NTPNAFKGFERRCGSCSDEIPLLSPKASDRSFNPRSSSEPLALVRP-----GISPA*SAD 236
           N    FK FERR  S      + +  A+  S  P +SSEP     P     G+ P  + +
Sbjct: 164 NAAAEFKAFERRMDSMRSASTITTSLATPSSCAPSNSSEPPTRSTPIMNDLGVGPN-NHN 222

Query: 235 WP 230
           WP
Sbjct: 223 WP 224


>AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein
           protein.
          Length = 808

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
 Frame = -3

Query: 400 NTPNAFKGFERRCGSCSDEIPLLSPKASDRSFNPRSSSEPLALVRP-----GISPA*SAD 236
           N    FK FERR  S      + +  A+  S  P +SSEP     P     G+ P  + +
Sbjct: 164 NAAAEFKAFERRMDSMRSASTITTSLATPSSCAPSNSSEPPTRSTPIMNDLGVGPN-NHN 222

Query: 235 WP 230
           WP
Sbjct: 223 WP 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,471,074
Number of Sequences: 27780
Number of extensions: 289481
Number of successful extensions: 634
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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