Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_G03
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63530.1 68414.m07182 hypothetical protein                          29   2.7  
At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related si...    27   8.2  
At1g12140.1 68414.m01406 flavin-containing monooxygenase family ...    27   8.2  

>At1g63530.1 68414.m07182 hypothetical protein
          Length = 499

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
 Frame = -3

Query: 490 RAGFSSELPP-TGPGFGSNPIASG---TX*PLEFNTPNA-FKGFERRCGSCSDEIPLLSP 326
           R  FS+ L   TGP FG  P A+G   T     F  PNA F GF+ +  S         P
Sbjct: 348 RTNFSTTLGNFTGPAFGFFPAAAGGATTFSSTGFGQPNAPFPGFDSQFPSAFSSFSTTYP 407

Query: 325 KASDRSFNPRSS 290
             S     P  +
Sbjct: 408 AVSSSVQRPHET 419


>At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related
           similar to ubiquitin-conjugating enzyme (GI:3319990)
           [Mus musculus]; similar to Baculoviral IAP
           repeat-containing protein 6 (Ubiquitin-conjugating
           BIR-domain enzyme apollon) (Swiss-Prot:Q9NR09) [Homo
           sapiens];
          Length = 609

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -3

Query: 493 PRAGFSSELPPTGPGFGSN 437
           P AG S  LPP  PGF SN
Sbjct: 255 PAAGSSGLLPPNTPGFKSN 273


>At1g12140.1 68414.m01406 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenase [Cavia porcellus]
           GI:191259; contains Pfam profile PF00743: Flavin-binding
           monooxygenase-like
          Length = 459

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = -1

Query: 138 IQYGQWAAQDIGKKPRSQW--SRVNKGY 61
           + Y  W A+ IG  P  QW    +N GY
Sbjct: 389 VDYLNWIAEQIGAPPGEQWRYQEINGGY 416


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,763,975
Number of Sequences: 28952
Number of extensions: 273887
Number of successful extensions: 677
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)