Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_G02
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   1.8  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   5.6  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   5.6  
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...    25   7.4  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    25   7.4  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    25   9.8  

>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 217 LLNREYYRPWRHLAAAARDVGSSIKVDKDKFQV 315
           LLN  Y + W+ L++  + +  S   DKD  Q+
Sbjct: 358 LLNGRYKKRWQQLSSEVKKISDSASSDKDVKQL 390


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 240 SVVFPVQQRPGSDTKKIIWC*GKAKMLVQQ 151
           + VF + Q PG+D   I  C G  ++LV +
Sbjct: 661 TAVFAIMQNPGNDWDMIRACIGSKEILVPE 690


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
 Frame = -1

Query: 503 SDDSRDSTVSGAAPSGSA*R----RTNCLEIYPCSXXFSXCLPSTTMYPSAVFTEIXSGA 336
           S  S  +T + +A S  A       +N +     S   S  + S ++  S++   I S A
Sbjct: 343 SSSSASATATSSAESSIATSPITSSSNVVSSISTSSMDSSAVSSYSVVQSSL-ASIISNA 401

Query: 335 KCCTSKFTWNLSLSTLMLEPTS 270
              TSK   N  +STL+  PTS
Sbjct: 402 YIATSKSGLNSGVSTLLASPTS 423


>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +1

Query: 247 RHLAAAARDVGSSIKVDKDKFQVNLDVQHFAPEXI 351
           +H+     +V   ++VDK+K  ++L  +  +PE +
Sbjct: 61  KHIRVGRNEVVVVLRVDKEKGYIDLSKRRVSPEDV 95


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 57  GYNVCMFVFSRCGS 16
           GYNVC+F + + GS
Sbjct: 554 GYNVCIFAYGQTGS 567


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/66 (19%), Positives = 29/66 (43%)
 Frame = -1

Query: 551 LTASGTFXGAVMVSTPSDDSRDSTVSGAAPSGSA*RRTNCLEIYPCSXXFSXCLPSTTMY 372
           ++ S +F  + +     +D     +SG  P+  + +    LE+YP     S  +PS  + 
Sbjct: 457 VSQSDSFDTSNVTQDAPNDVEKEPISGQMPNNLSVQSLKQLEVYPIRHSVSIEMPSEKLL 516

Query: 371 PSAVFT 354
              +++
Sbjct: 517 SPRLYS 522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,167,933
Number of Sequences: 5004
Number of extensions: 41164
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)