Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_G01
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces pomb...    29   0.68 
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    27   2.7  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    26   3.6  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    26   4.8  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    25   6.3  
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo...    25   6.3  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    25   8.3  
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.3  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    25   8.3  

>SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 96

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 430 DIYARVPXGPKPEQRFHSFYNY 495
           D Y+R+P GP P++  +SF+++
Sbjct: 34  DFYSRLPHGPAPKKSSNSFFSW 55


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 177 VLWTVLHSRHRIRNLPHYNRRWN 109
           +L    H+R  I +LPH+ RRW+
Sbjct: 407 ILQLATHNRSFICSLPHFLRRWS 429


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/46 (36%), Positives = 19/46 (41%)
 Frame = -2

Query: 228 PCQAFYNKKTCHIPXRSVLWTVLHSRHRIRNLPHYNRRWNTWLLIE 91
           PC+A  N   CHI  R+  W       R    P Y    NT L IE
Sbjct: 59  PCKAVLNPY-CHIDTRAKFWICPFCLQRNMLPPQYKDISNTSLPIE 103


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 20/79 (25%), Positives = 33/79 (41%)
 Frame = +3

Query: 111 SSDDYNEGGYESYGDYEAQSTEHYXPEYDRSSYYKMPDMVKKFLVYFRNMINEGVTYXIL 290
           S  DY    YE Y ++ A +       ++++    +PD VK F + F           +L
Sbjct: 430 SGSDYT---YEQYINHSAVAFSFTEEIFEKNFVTVLPDFVKLFSISFGYWPAFSFYDELL 486

Query: 291 NLYENTFPTLTEKYFENTP 347
            L  N +P    K + +TP
Sbjct: 487 KLLRNKYP----KVYSSTP 501


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 105 MYSSDDYNEGGYESYGDYEAQSTEHYXPEYDRSSY 209
           M+ +D  + GG  +  D++++  + Y P  D  SY
Sbjct: 19  MFGADTGSIGGITNMRDFQSRFADRYNPVTDTYSY 53


>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
           YakC|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 132 GGYESYGDYEAQSTEHYXPEYDRSSYYKMPDMVKK 236
           G Y+S  D+         P Y + ++YK  ++V K
Sbjct: 217 GAYKSPDDFPEGDFRRKAPRYQKENFYKNLELVTK 251


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 192 YDRSSYYKMPDMVKKFLVYFRNMINEGVTY 281
           YD  S   + DM KK L+ FRN   +G+ Y
Sbjct: 331 YDIISKLSVSDMKKKLLIRFRN--EDGLDY 358


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 439 ARVPXGPKPEQRFHSFYNYCDLFNYILSVTPVPLELPDQWLWELID 576
           A +   PKPE +    Y   DL      VTP PLE P     E+++
Sbjct: 281 ANITALPKPEPKM---YENSDLTPARTPVTPAPLEKPVNLAPEVVE 323


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 439 HRCHGSIVLCIG 404
           H CHG +V+C+G
Sbjct: 272 HLCHGHLVMCMG 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,198,833
Number of Sequences: 5004
Number of extensions: 42447
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)