Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_G01
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0906 - 7124686-7124730,7124854-7124925,7125257-7125383,712...    83   1e-16
05_03_0041 - 7662094-7662138,7662269-7662340,7663144-7663179,766...    83   2e-16
03_01_0289 + 2242584-2242931,2242973-2243005,2244158-2244241,224...    30   1.6  
08_02_0747 - 20728073-20728081,20728167-20728353,20728810-207289...    27   8.5  
04_04_0205 + 23591720-23591848,23592640-23592740,23592829-23593222     27   8.5  

>01_01_0906 -
           7124686-7124730,7124854-7124925,7125257-7125383,
           7125424-7125572,7126126-7126465,7126759-7127090,
           7127327-7127860
          Length = 532

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 40/87 (45%), Positives = 54/87 (62%), Gaps = 6/87 (6%)
 Frame = +1

Query: 352 PDEXEVSPIVDNDNVFMILYKELYYRDIYARVPXGPKPE------QRFHSFYNYCDLFNY 513
           P    VSP  D D+VF++LY+EL+YR  YAR              QR  S+ NYCDLF+ 
Sbjct: 67  PAAEAVSPYCDGDHVFLLLYRELWYRHAYARASSSSSSSAPLTAGQRAESWANYCDLFSV 126

Query: 514 ILSVTPVPLELPDQWLWELIDEFVYXF 594
           +L    V ++LP+QWLW+++DEFVY F
Sbjct: 127 VLHGV-VNMQLPNQWLWDMVDEFVYQF 152



 Score = 32.7 bits (71), Expect = 0.23
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 216 MPDMVKKFLVYFRNMINEGVTYXILNLYENTFPTLTEKYFENTP 347
           +PD VK F+ +    + +   Y I  +YE  F  L+++ F + P
Sbjct: 22  VPDSVKTFVAHMYRHVRDKNVYEIHQMYEGGFQRLSDRLFRDAP 65


>05_03_0041 -
           7662094-7662138,7662269-7662340,7663144-7663179,
           7663356-7663449,7663533-7663681,7664525-7664864,
           7666417-7666748,7667348-7667821
          Length = 513

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 38/81 (46%), Positives = 55/81 (67%)
 Frame = +1

Query: 352 PDEXEVSPIVDNDNVFMILYKELYYRDIYARVPXGPKPEQRFHSFYNYCDLFNYILSVTP 531
           P    V+   D D+VF++LY+EL++R  +ARV  G  P QR  S+ NYC LF+ +L    
Sbjct: 54  PPAEAVAAHCDGDHVFLLLYRELWFRHAHARVQ-GLTPAQRAESWDNYCSLFSVVLQGV- 111

Query: 532 VPLELPDQWLWELIDEFVYXF 594
           V ++LP+QWLW+++DEFVY F
Sbjct: 112 VNMQLPNQWLWDMVDEFVYQF 132



 Score = 33.5 bits (73), Expect = 0.13
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 216 MPDMVKKFLVYFRNMINEGVTYXILNLYENTFPTLTEKYFENTP 347
           +PD VK F+ +    I +   Y    +YE  F  L++++F +TP
Sbjct: 9   VPDSVKTFVSHLYRHIRDRNVYETHQMYEGGFTRLSDRHFRDTP 52


>03_01_0289 +
           2242584-2242931,2242973-2243005,2244158-2244241,
           2244640-2245782
          Length = 535

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -2

Query: 228 PCQAFYNKKT-----CHIPXRSVLWTVLHSRHRIRNLPHYNRR 115
           PC AF+ K T     CH   ++  WT +    + +NLP  NRR
Sbjct: 166 PC-AFWGKGTEPTDHCHATDKNAKWTKMRQSLKRKNLPSSNRR 207


>08_02_0747 -
           20728073-20728081,20728167-20728353,20728810-20728913,
           20729008-20729139,20729583-20729810,20730263-20730358,
           20730440-20730511,20730588-20730760,20730947-20731000,
           20731086-20731134,20731228-20731326,20731420-20731511,
           20731607-20731832,20731927-20732100,20732186-20732809,
           20732890-20733033,20733108-20733218,20733516-20733650,
           20733963-20733989
          Length = 911

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 323 SECGEGILIEVQDXICYTFINHVAKVNKEFLDHVR 219
           S  G+ +  +VQD IC+   NH  K ++ F D  +
Sbjct: 419 SSVGDLLPSDVQDKICHLLCNHFGKEDEIFEDKAK 453


>04_04_0205 + 23591720-23591848,23592640-23592740,23592829-23593222
          Length = 207

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 192 IPXRSVLWTVLHSRHRIRNLPHYNRR 115
           +P RSV+ TVLH+  +  N  H  RR
Sbjct: 153 VPLRSVVTTVLHAEEKDVNKSHARRR 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,479,729
Number of Sequences: 37544
Number of extensions: 251114
Number of successful extensions: 564
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)