Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_G01
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.40 
SB_34942| Best HMM Match : Ca_channel_B (HMM E-Value=2.09999e-41)      29   2.8  
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  
SB_50618| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00017)         28   6.5  
SB_42812| Best HMM Match : RVT_1 (HMM E-Value=8.4e-19)                 28   6.5  
SB_2198| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  

>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 114 SDDYNEGGYESYGDYEAQSTEHYXPEYDRSSYYKMPDMVK 233
           S  Y+   +  YG Y+A+   +Y P   RS +    DMVK
Sbjct: 19  SSPYSSVHFPVYGQYDARQERYYGPPLPRSQHPTRQDMVK 58


>SB_34942| Best HMM Match : Ca_channel_B (HMM E-Value=2.09999e-41)
          Length = 536

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +3

Query: 108 YSSDDYNEGGYESYGDYEAQST----EHYXPEYDRSSYYKMP 221
           Y ++ Y EG Y+  GDY+  +     + Y PEYD   Y + P
Sbjct: 458 YGAEIY-EGQYQEGGDYQYNAELGYQQDYSPEYDSQQYGQEP 498


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +3

Query: 138 YESYGDYEAQSTEHYXPEYDRSSYYKMPDMVKKFLVYFRNMINEG-VTYXILNLYENTFP 314
           Y+S   Y++       P Y  SS YK   + K   +Y  + + E    Y    LY+++ P
Sbjct: 596 YKSSSLYKSSPLYKSSPPYKSSSLYKSSSLYKSSSLYKSSSLYESPPLYKSSPLYKSSPP 655

Query: 315 TLTEKYFENTPCAR 356
             +   + ++P  +
Sbjct: 656 YKSSSLYRSSPLCK 669


>SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1371

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +3

Query: 138  YESYGDYEAQSTEH----YXPEYDRSSYYKMPDMVKKFLVYFRNMINEGVTYXILNLYEN 305
            Y+  GD E   T+       PE++ S  + +P + +K L +F N     +T+ +    E+
Sbjct: 1177 YKCLGDEEFTQTDTKANTLSPEFNNSKVFSIPSISEKHLEWFENGC---ITFMVYGRQED 1233

Query: 306  TFP 314
            + P
Sbjct: 1234 SIP 1236


>SB_50618| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00017)
          Length = 748

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -2

Query: 171 WTVLHSRHRIRNLPHYNRRWNTWLLIESNSIHTLE 67
           W+VL  + + R LP  N+++   ++ + + IHT++
Sbjct: 537 WSVLKQKSKSRGLPSQNKKFMLSIIDDFHVIHTVQ 571


>SB_42812| Best HMM Match : RVT_1 (HMM E-Value=8.4e-19)
          Length = 769

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 409 YKELYYRDIYARVPXGPKPEQR 474
           + ++Y  D Y ++P GP+P++R
Sbjct: 109 FTKIYLADAYNQIPLGPEPQKR 130


>SB_2198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 962

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/66 (25%), Positives = 26/66 (39%)
 Frame = +1

Query: 304  IPSPHSLRNTLKIHLAPDEXEVSPIVDNDNVFMILYKELYYRDIYARVPXGPKPEQRFHS 483
            +PS HSL   +  +    E EV      D +  IL   L    +   +     P+ +   
Sbjct: 857  LPSGHSLLVVIDYYSRYYEVEVMKSTTTDKIIDILETILSRHGLPLTIKSDNGPQFKSEE 916

Query: 484  FYNYCD 501
            F NYC+
Sbjct: 917  FKNYCE 922


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,279,282
Number of Sequences: 59808
Number of extensions: 313948
Number of successful extensions: 657
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)