Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_G01
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28739-15|AAK68188.1|  537|Caenorhabditis elegans Hypothetical p...    93   1e-19
U28739-14|AAM54207.1|  535|Caenorhabditis elegans Hypothetical p...    93   1e-19
AF016674-3|AAB66128.1|  558|Caenorhabditis elegans Hypothetical ...    46   3e-05
Z75711-8|CAJ43907.1|  118|Caenorhabditis elegans Hypothetical pr...    32   0.27 
U97403-9|AAB52469.1|  389|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U80028-8|AAN73866.1|  378|Caenorhabditis elegans Serpentine rece...    28   5.8  

>U28739-15|AAK68188.1|  537|Caenorhabditis elegans Hypothetical
           protein C17G10.9a protein.
          Length = 537

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 45/83 (54%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
 Frame = +1

Query: 352 PDEXEVSPIVDNDN-VFMILYKELYYRDIYARVPXGPKPEQRFHSFYNYCDLFNYIL-SV 525
           PDE  V  I+   N +F+ILYKELYYR +YAR   GP    R+ SF NY +LF+ +L S 
Sbjct: 77  PDENVVERIIGPGNKLFIILYKELYYRQLYARNTRGPLLVHRYESFMNYQELFSELLSSK 136

Query: 526 TPVPLELPDQWLWELIDEFVYXF 594
            P+PL LP+ WLW++IDEFVY F
Sbjct: 137 DPIPLSLPNVWLWDIIDEFVYQF 159



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 18/42 (42%), Positives = 27/42 (64%)
 Frame = +3

Query: 216 MPDMVKKFLVYFRNMINEGVTYXILNLYENTFPTLTEKYFEN 341
           +P+ V  +LVYF  M++E     IL LY+  FP LTE++F +
Sbjct: 32  VPNEVADYLVYFSRMVDEQNVPEILTLYDQAFPDLTERFFRD 73


>U28739-14|AAM54207.1|  535|Caenorhabditis elegans Hypothetical
           protein C17G10.9b protein.
          Length = 535

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 45/83 (54%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
 Frame = +1

Query: 352 PDEXEVSPIVDNDN-VFMILYKELYYRDIYARVPXGPKPEQRFHSFYNYCDLFNYIL-SV 525
           PDE  V  I+   N +F+ILYKELYYR +YAR   GP    R+ SF NY +LF+ +L S 
Sbjct: 75  PDENVVERIIGPGNKLFIILYKELYYRQLYARNTRGPLLVHRYESFMNYQELFSELLSSK 134

Query: 526 TPVPLELPDQWLWELIDEFVYXF 594
            P+PL LP+ WLW++IDEFVY F
Sbjct: 135 DPIPLSLPNVWLWDIIDEFVYQF 157



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 18/42 (42%), Positives = 27/42 (64%)
 Frame = +3

Query: 216 MPDMVKKFLVYFRNMINEGVTYXILNLYENTFPTLTEKYFEN 341
           +P+ V  +LVYF  M++E     IL LY+  FP LTE++F +
Sbjct: 30  VPNEVADYLVYFSRMVDEQNVPEILTLYDQAFPDLTERFFRD 71


>AF016674-3|AAB66128.1|  558|Caenorhabditis elegans Hypothetical
           protein C03H5.5 protein.
          Length = 558

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
 Frame = +1

Query: 352 PDEXEVSPIVDNDNV-FMILYKELYYRDIYARVPXGPKPEQRFHSFYNYCDLFNYILSVT 528
           PDE  V   +  +N  FM+LYKEL YR + A         Q      NY  +F    S+ 
Sbjct: 139 PDEITVRKSISPENQDFMVLYKELKYRRLNAEA------RQNKDMLENYQSIF----SIL 188

Query: 529 PVPLELPDQWLWELIDEFVY 588
           P  L LPD W+ ++++E+V+
Sbjct: 189 PGKLNLPDYWILDIMEEYVF 208


>Z75711-8|CAJ43907.1|  118|Caenorhabditis elegans Hypothetical
           protein K02B12.9 protein.
          Length = 118

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 138 YESYGDYEAQSTEHYXPEYDRSSY 209
           YESYG Y+     HY P Y   SY
Sbjct: 43  YESYGKYDDHKDSHYQPSYYHDSY 66


>U97403-9|AAB52469.1|  389|Caenorhabditis elegans Hypothetical
           protein T10E9.1 protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 90  ILLTTMYSSDDYNEGGYESYGDYEAQSTEHYXPEYDRSSY 209
           ILL   + +DD +E   ++Y DY+     ++ P+YD   Y
Sbjct: 330 ILLGLPHFADDSSEYD-DNYDDYDNDEDSNFDPDYDYERY 368


>U80028-8|AAN73866.1|  378|Caenorhabditis elegans Serpentine
           receptor, class w protein118 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 156 SRHRIRNLPHYNRRWNTWLLIESNSIHTL 70
           +RH +  L  Y+RR +TWL++    I TL
Sbjct: 113 NRHLLHLLKDYSRRCSTWLMVFIALIRTL 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,066,145
Number of Sequences: 27780
Number of extensions: 237750
Number of successful extensions: 534
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)