Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_F23
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   3.9  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    26   5.1  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    25   9.0  

>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
 Frame = -2

Query: 594  RSRHNRTDKLSLYFHTTHDSXVAFVLKGSNYIMGTARIDVVFNHSNASESDQT----KVQ 427
            +S  +  D L L  +      V+     +  I G+  + +++  ++    D      K+Q
Sbjct: 1232 KSLQSTVDSLQLELNRLQSLPVSNDQTDTPIISGSQEVQLLYESNSVLRKDNDAKLGKIQ 1291

Query: 426  NVETN*IKSXGNIGPLKTSATELLAVLNSSGA 331
             +E    K   ++ PL+T   EL A + +  A
Sbjct: 1292 ELEKEVEKLNASLNPLQTEINELKAEIGAKTA 1323


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 249 WVQRMALSCSRLHGNTSCLFVLSL 178
           W+  +AL+ SR +GNT  L  L L
Sbjct: 189 WMDSVALNLSRYYGNTEALSSLPL 212


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +1

Query: 403 FNLICFHILNFCLIAFGCVRVVENDINAGSSHYIIGPFQNKSYXTVVCCVEI 558
           F L    +L   L+ F    V++  +  GSS  I+G  + K +   +C  ++
Sbjct: 599 FGLDYAELLGSSLLDFQPATVLDMKLLNGSSILILGKLKEKCFLCEICLADV 650


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,210
Number of Sequences: 5004
Number of extensions: 53274
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)