Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_F23
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 30 1.3
09_04_0323 - 16679565-16679939,16680328-16680660,16680721-166810... 29 3.0
11_03_0045 + 9253101-9253135,9253802-9253917,9255642-9256084 29 4.0
03_02_0493 - 8866685-8866888,8866989-8867059,8867143-8867416,886... 28 5.3
07_01_0975 + 8223269-8224354 28 7.0
07_01_0446 - 3371829-3372132,3374691-3375673 28 7.0
07_01_0445 - 3365244-3366227 28 7.0
06_01_0866 + 6582131-6583294 28 7.0
03_06_0337 + 33224333-33224479,33224603-33224663,33224740-332247... 28 7.0
07_01_0593 + 4417753-4417759,4418240-4419698,4419819-4421301,442... 27 9.2
06_03_0487 - 21352955-21353080,21353164-21353357,21353815-213539... 27 9.2
06_01_0358 + 2573241-2573324,2573509-2573636,2573769-2573971,257... 27 9.2
03_06_0065 - 31399791-31399874,31399956-31400165,31400407-314005... 27 9.2
>02_05_1074 -
33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 280 VRLVTAATGSMGPADGALLLSPSRKHFL 197
VR V A + S+GP D + L P KHFL
Sbjct: 845 VRFVVACSESIGPVDTFVYLFPHLKHFL 872
>09_04_0323 -
16679565-16679939,16680328-16680660,16680721-16681032,
16683590-16683825,16683972-16684239
Length = 507
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/56 (39%), Positives = 26/56 (46%)
Frame = +3
Query: 153 PLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVAAVTRRTSRTVPHTYPSSVT 320
PL VL GS+ R R RR PS+ P P AA + R PHT S +T
Sbjct: 38 PLPPAAVL-GSSPAARTRLRP---RRRPSSAPHPPPAAASTSALRPRPHTQNSELT 89
>11_03_0045 + 9253101-9253135,9253802-9253917,9255642-9256084
Length = 197
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -1
Query: 331 SEFKVTDDG*VCGTVREVRLVTAAT-GSMGPADGALLLSPSRKHFLFICVEPGSTPR 164
SE +VT DG +V ++ + A G+ G G L PSR + + P PR
Sbjct: 35 SEVRVTFDGLQLKSVTDLEVAAAGDLGAEGEGGGGCSLGPSRSRWSPTTLRPDLAPR 91
>03_02_0493 -
8866685-8866888,8866989-8867059,8867143-8867416,
8867666-8868036,8868127-8868482,8868558-8868630,
8869307-8869412,8869667-8869760,8870616-8870680,
8871655-8871927
Length = 628
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 579 RTDKLSLYFHTTHDSXVAFVLKGSNYIMGTARID 478
R DK S T H S V+ ++G+NY + R+D
Sbjct: 267 RLDKTSGQSPTKHSSLVSKYIRGNNYASSSQRLD 300
>07_01_0975 + 8223269-8224354
Length = 361
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 268 TAATGSMGPADGALLLSPSRKHFLFICVEPGSTPR-CPSGTPSMSPQKGSPASQP 107
T GS G + SPS P +P P+G+P+ P G PAS P
Sbjct: 235 TGYGGSSGSPSSSPSSSPSSSPSGSPSSSPSGSPSGSPAGSPAGGPTAGGPASGP 289
>07_01_0446 - 3371829-3372132,3374691-3375673
Length = 428
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 88 NFYSMCMAVKLEIPSVVTLMEFRLDSAEYCQAQHK 192
NF++ C+ + E+P+VV ++RL A H+
Sbjct: 101 NFHAGCLRLAAELPAVVLSFDYRLAPEHRLPAAHE 135
>07_01_0445 - 3365244-3366227
Length = 327
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 64 GCSRLPPFNFYSMCMAVKLEIPSVVTLMEFRL 159
G R P NF++ C+ + E+P+VV ++RL
Sbjct: 90 GSGRWP--NFHAWCLRLAAELPAVVLSFDYRL 119
>06_01_0866 + 6582131-6583294
Length = 387
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 293 NSARGASSHRRYRQHGSSG 237
N A+G+S HR+++ HG G
Sbjct: 354 NGAQGSSQHRQHQHHGGGG 372
>03_06_0337 +
33224333-33224479,33224603-33224663,33224740-33224776,
33225237-33225367,33225447-33225590,33225686-33225776,
33225973-33226106,33226234-33226373,33227328-33227426,
33227520-33227602,33227690-33227744,33227826-33227937,
33228274-33228766,33228881-33229094,33229203-33229273,
33229733-33229901,33229991-33230120,33230556-33230968,
33231059-33231262
Length = 975
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 153 PLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVA 263
PLG + G NR+ F +G R++ LP A
Sbjct: 814 PLGDQSATDGPDANNRRAFNKGNKRKSHDRSSKLPYA 850
>07_01_0593 +
4417753-4417759,4418240-4419698,4419819-4421301,
4421378-4421419,4421420-4421584,4421669-4421864,
4421955-4422066,4422154-4422301,4422417-4422614,
4422710-4422866,4422882-4422988,4423084-4423245,
4423314-4423562,4423676-4423810
Length = 1539
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 334 GSEFKVTDDG*VCGTVREVRLVTAATGSMGPADGALLLSPSRK 206
GS F DDG C T +L ++++ + A ++ LSP ++
Sbjct: 427 GSGFMREDDGSCCSTAESAKLSSSSSSNHQDAGVSIYLSPIKE 469
>06_03_0487 -
21352955-21353080,21353164-21353357,21353815-21353973,
21354117-21354242,21354502-21354704,21354892-21355019,
21355323-21355565,21356734-21356928
Length = 457
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -1
Query: 292 TVREVRLVTAATGSMGPADGA-LLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPA 116
T +V + A+ GS G G L +CVEP +P G+P +G+ A
Sbjct: 306 TAGKVDVFVASVGSGGTLTGVGRYLKMKNPSINIVCVEPSESPVISGGSPGPHKIQGTGA 365
>06_01_0358 +
2573241-2573324,2573509-2573636,2573769-2573971,
2574129-2574254,2574522-2574680,2574857-2575050,
2575251-2575376
Length = 339
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Frame = -1
Query: 292 TVREVRLVTAATGSMGPADGA-LLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKG-SP 119
T +V + A +G+ G G L ICVEP +P G PS +G P
Sbjct: 188 TAGKVDIFVAGSGTGGTISGVGKYLKMKNPAVKVICVEPAESPVISGGKPSRHKIQGMGP 247
Query: 118 ASQPYTLN 95
P L+
Sbjct: 248 GFVPKNLD 255
>03_06_0065 -
31399791-31399874,31399956-31400165,31400407-31400526,
31401166-31401225,31401670-31401879,31402512-31402587,
31403010-31403173,31403254-31403316,31403640-31403727,
31403810-31404460,31405102-31405149,31405334-31405902
Length = 780
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 178 GSTPRCPSGTPSMSPQKGSPASQP 107
GS+PRC S M Q+ SP S P
Sbjct: 307 GSSPRCASPEKIMGSQERSPRSSP 330
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,021,313
Number of Sequences: 37544
Number of extensions: 382001
Number of successful extensions: 1207
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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