Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_F23
(628 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15) 29 2.3
SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53) 29 4.1
SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45) 29 4.1
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05) 28 5.4
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07) 27 9.4
>SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = -1
Query: 607 HNRLTVPSQSNRQTVTL---FPHNTRQXRSFCFERVQLYNGNCPH 482
HN +T+PSQ N T+T+ + HNT S C H
Sbjct: 384 HNTITIPSQYNHNTITIPSQYHHNTNTIPSQYHHNTITIPSQCHH 428
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Frame = -1
Query: 607 HNRLTVPSQSNRQTVTL---FPHNT 542
HN +T+PSQ +R T+T+ + HNT
Sbjct: 252 HNTITIPSQYHRNTITIQSQYHHNT 276
>SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)
Length = 333
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -1
Query: 226 LLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSP 119
L++P K+F++ CV PG++ R P+ PS++ +P
Sbjct: 207 LVAPITKYFIYGCVTPGAS-RTPTLVPSINGGNTTP 241
>SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 491 LPALMSFSTTRTHPKAIKQKFRMWKQIK 408
LP M T +T PK + Q FR +KQ++
Sbjct: 40 LPPNMRLQTPKTGPKGVIQDFRRYKQLE 67
>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
Length = 287
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 231 APSAGPMLPVAAVTRRTSRTVPHTYPSSV 317
AP+ P P AA R+VP T PSSV
Sbjct: 112 APAPAPAAPSAAAAPAPVRSVPSTSPSSV 140
>SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)
Length = 671
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 187 VEPGSTPRCPSGTPSMSPQKGSPASQPYT 101
+ P S P PS +P+ + GSP QP++
Sbjct: 77 LNPTSDPEIPSSSPNDNHLPGSPGEQPFS 105
>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1741
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -1
Query: 274 LVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSG 152
LV A T ++ PAD +L+ SPSR CV T C +G
Sbjct: 751 LVFAWTYNVNPADASLIASPSRS-----CVHGNVTLTCTAG 786
>SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)
Length = 2293
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 598 LTVPSQSNRQTVTLFPHNTRQXRSFCFERVQLY 500
+T+P +TV + H TR+ R + ER++ Y
Sbjct: 2203 VTIPETDCEETVNEYCHKTREERKYVNERLRRY 2235
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 255 PVAAVTRRTSRTVPHTYPSSVTLNSEPRCC*AQPTIQL 368
PVAA+ +T+++VPHT + T P C Q T L
Sbjct: 2027 PVAALATQTTQSVPHTMGNPTT--PRPPSCLTQQTSTL 2062
>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1940
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -1
Query: 166 RCPSGTPSMSPQKG-SPASQPYTLNRN*TVAAVSSRRNSPHTQKRVHRTRKR 14
R P+ +PS K SPAS P+ L SR HT+ H+ + R
Sbjct: 1787 RIPTSSPSTKMYKSASPASTPHRLTDRRDQEGQGSRGAGIHTEAPKHKPQDR 1838
>SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -1
Query: 178 GSTPRCPSGTPSMSPQKGSPASQPYTLNRN*TVAA--VSSRRNSPHTQ 41
G T P G + ++GSP++QP + + T V + R SP TQ
Sbjct: 69 GVTKYTPRGVHQVHIERGSPSTQPEGVTKYTTRGGHQVHNERGSPSTQ 116
>SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07)
Length = 1253
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -1
Query: 169 PRCPSGTPSMSPQKGSPASQPYTLNRN*TVAAVSSRRNSPHTQKRV 32
P G SP +GSP + L R + +RR+ PH Q V
Sbjct: 359 PHLLQGRMEASPLQGSPQVTNHNLARTKGQTSEGNRRHHPHIQAAV 404
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,684,683
Number of Sequences: 59808
Number of extensions: 449257
Number of successful extensions: 1278
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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